FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE1455, 100 aa 1>>>pF1KE1455 100 - 100 aa - 100 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 6.7971+/-0.000663; mu= 4.5268+/- 0.040 mean_var=128.5746+/-25.039, 0's: 0 Z-trim(115.0): 13 B-trim: 0 in 0/52 Lambda= 0.113109 statistics sampled from 15518 (15528) to 15518 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.801), E-opt: 0.2 (0.477), width: 16 Scan time: 1.510 The best scores are: opt bits E(32554) CCDS33559.1 HMGN1 gene_id:3150|Hs108|chr21 ( 100) 625 111.3 1e-25 >>CCDS33559.1 HMGN1 gene_id:3150|Hs108|chr21 (100 aa) initn: 625 init1: 625 opt: 625 Z-score: 575.4 bits: 111.3 E(32554): 1e-25 Smith-Waterman score: 625; 100.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100) 10 20 30 40 50 60 pF1KE1 MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS33 MPKRKVSSAEGAAKEEPKRRSARLSAKPPAKVEAKPKKAAAKDKSSDKKVQTKGKRGAKG 10 20 30 40 50 60 70 80 90 100 pF1KE1 KQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD :::::::::::::::::::::::::::::::::::::::: CCDS33 KQAEVANQETKEDLPAENGETKTEESPASDEAGEKEAKSD 70 80 90 100 100 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:09:58 2016 done: Mon Nov 7 03:09:58 2016 Total Scan time: 1.510 Total Display time: -0.030 Function used was FASTA [36.3.4 Apr, 2011]