FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE3585, 531 aa 1>>>pF1KE3585 531 - 531 aa - 531 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.2748+/-0.00124; mu= -2.8566+/- 0.075 mean_var=316.1477+/-62.579, 0's: 0 Z-trim(111.6): 27 B-trim: 26 in 1/50 Lambda= 0.072132 statistics sampled from 12458 (12472) to 12458 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.7), E-opt: 0.2 (0.383), width: 16 Scan time: 3.760 The best scores are: opt bits E(32554) CCDS12533.1 PAF1 gene_id:54623|Hs108|chr19 ( 531) 3523 380.5 2.6e-105 CCDS59387.1 PAF1 gene_id:54623|Hs108|chr19 ( 485) 2457 269.6 6e-72 >>CCDS12533.1 PAF1 gene_id:54623|Hs108|chr19 (531 aa) initn: 3523 init1: 3523 opt: 3523 Z-score: 2004.2 bits: 380.5 E(32554): 2.6e-105 Smith-Waterman score: 3523; 100.0% identity (100.0% similar) in 531 aa overlap (1-531:1-531) 10 20 30 40 50 60 pF1KE3 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE3 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE3 SQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 SQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIE 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE3 KTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 KTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEM 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE3 MSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 MSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK 250 260 270 280 290 300 310 320 330 340 350 360 pF1KE3 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE 310 320 330 340 350 360 370 380 390 400 410 420 pF1KE3 LEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESER :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESER 370 380 390 400 410 420 430 440 450 460 470 480 pF1KE3 EEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 EEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDN 430 440 450 460 470 480 490 500 510 520 530 pF1KE3 DSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD ::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 DSDSGSNGGGQRSRSHSRSASPFPSGSEHSAQEDGSEAAASDSSEADSDSD 490 500 510 520 530 >>CCDS59387.1 PAF1 gene_id:54623|Hs108|chr19 (485 aa) initn: 2455 init1: 2455 opt: 2457 Z-score: 1405.2 bits: 269.6 E(32554): 6e-72 Smith-Waterman score: 2527; 97.5% identity (97.5% similar) in 394 aa overlap (1-394:1-384) 10 20 30 40 50 60 pF1KE3 MAPTIQTQAQREDGHRPNSHRTLPERSGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ :::::::::::::::: :::::::::::::::::::::::::::::::::: CCDS59 MAPTIQTQAQREDGHR----------SGVVCRVKYCNSLPDIPFDPKFITYPFDQNRFVQ 10 20 30 40 50 70 80 90 100 110 120 pF1KE3 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 YKATSLEKQHKHDLLTEPDLGVTIDLINPDTYRIDPNVLLDPADEKLLEEEIQAPTSSKR 60 70 80 90 100 110 130 140 150 160 170 180 pF1KE3 SQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 SQQHAKVVPWMRKTEYISTEFNRYGISNEKPEVKIGVSVKQQFTEEEIYKDRDSQITAIE 120 130 140 150 160 170 190 200 210 220 230 240 pF1KE3 KTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 KTFEDAQKSISQHYSKPRVTPVEVMPVFPDFKMWINPCAQVIFDSDPAPKDTSGAAALEM 180 190 200 210 220 230 250 260 270 280 290 300 pF1KE3 MSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 MSQAMIRGMMDEEGNQFVAYFLPVEETLKKRKRDQEEEMDYAPDDVYDYKIAREYNWNVK 240 250 260 270 280 290 310 320 330 340 350 360 pF1KE3 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS59 NKASKGYEENYFFIFREGDGVYYNELETRVRLSKRRAKAGVQSGTNALLVVKHRDMNEKE 300 310 320 330 340 350 370 380 390 400 410 420 pF1KE3 LEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSDEEQEKGSSSEKEGSEDEHSGSESER :::::::::::::::::::::::::::::::::: CCDS59 LEAQEARKAQLENHEPEEEEEEEMETEEKEAGGSVMLILRTMPTLMMRTEDRPKVAVTMI 360 370 380 390 400 410 430 440 450 460 470 480 pF1KE3 EEGDRDEASDKSGSGEDESSEDEARAARDKEEIFGSDADSEDDADSDDEDRGQAQGGSDN CCDS59 QTAAAMGVASGAGATAAAPVPSPVAASTRPRRMAVKLQLLIPVKLIVTVTESQGIQGWFR 420 430 440 450 460 470 531 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Sun Nov 6 06:07:29 2016 done: Sun Nov 6 06:07:29 2016 Total Scan time: 3.760 Total Display time: -0.010 Function used was FASTA [36.3.4 Apr, 2011]