FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KE2741, 359 aa 1>>>pF1KE2741 359 - 359 aa - 359 aa Library: /omim/omim.rfq.tfa 65951994 residues in 93482 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.1772+/-0.000348; mu= 17.3906+/- 0.021 mean_var=65.4286+/-13.236, 0's: 0 Z-trim(112.8): 10 B-trim: 0 in 0/54 Lambda= 0.158559 statistics sampled from 22892 (22899) to 22892 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.632), E-opt: 0.2 (0.245), width: 16 Scan time: 3.840 The best scores are: opt bits E(93482) NP_061819 (OMIM: 605202,610442) sialic acid syntha ( 359) 2414 561.1 1.5e-159 XP_011517089 (OMIM: 605202,610442) sialic acid syn ( 243) 1592 373.0 4.3e-103 XP_024303342 (OMIM: 605202,610442) sialic acid syn ( 243) 1592 373.0 4.3e-103 XP_011517090 (OMIM: 605202,610442) sialic acid syn ( 234) 1388 326.3 4.7e-89 XP_016870300 (OMIM: 605202,610442) sialic acid syn ( 218) 1373 322.8 4.8e-88 >>NP_061819 (OMIM: 605202,610442) sialic acid synthase [ (359 aa) initn: 2414 init1: 2414 opt: 2414 Z-score: 2986.2 bits: 561.1 E(93482): 1.5e-159 Smith-Waterman score: 2414; 100.0% identity (100.0% similar) in 359 aa overlap (1-359:1-359) 10 20 30 40 50 60 pF1KE2 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEF :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 MPLELELCPGRWVGGQHPCFIIAEIGQNHQGDLDVAKRMIRMAKECGADCAKFQKSELEF 10 20 30 40 50 60 70 80 90 100 110 120 pF1KE2 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHDQYRELQRYAEEVGIFFTASGMDEMAVE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 KFNRKALERPYTSKHSWGKTYGEHKRHLEFSHDQYRELQRYAEEVGIFFTASGMDEMAVE 70 80 90 100 110 120 130 140 150 160 170 180 pF1KE2 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 FLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFC 130 140 150 160 170 180 190 200 210 220 230 240 pF1KE2 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 FLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHIT 190 200 210 220 230 240 250 260 270 280 290 300 pF1KE2 LDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNEKLGKSVVAKVK :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 LDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNEKLGKSVVAKVK 250 260 270 280 290 300 310 320 330 340 350 pF1KE2 IPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_061 IPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS 310 320 330 340 350 >>XP_011517089 (OMIM: 605202,610442) sialic acid synthas (243 aa) initn: 1592 init1: 1592 opt: 1592 Z-score: 1972.5 bits: 373.0 E(93482): 4.3e-103 Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 243 aa overlap (117-359:1-243) 90 100 110 120 130 140 pF1KE2 HLEFSHDQYRELQRYAEEVGIFFTASGMDEMAVEFLHELNVPFFKVGSGDTNNFPYLEKT :::::::::::::::::::::::::::::: XP_011 MAVEFLHELNVPFFKVGSGDTNNFPYLEKT 10 20 30 150 160 170 180 190 200 pF1KE2 AKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 AKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKL 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE2 FPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 FPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSV 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE2 RLVERALGSPTKQLLPCEMACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 RLVERALGSPTKQLLPCEMACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPED 160 170 180 190 200 210 330 340 350 pF1KE2 IFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS ::::::::::::::::::::::::::::::::: XP_011 IFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS 220 230 240 >>XP_024303342 (OMIM: 605202,610442) sialic acid synthas (243 aa) initn: 1592 init1: 1592 opt: 1592 Z-score: 1972.5 bits: 373.0 E(93482): 4.3e-103 Smith-Waterman score: 1592; 100.0% identity (100.0% similar) in 243 aa overlap (117-359:1-243) 90 100 110 120 130 140 pF1KE2 HLEFSHDQYRELQRYAEEVGIFFTASGMDEMAVEFLHELNVPFFKVGSGDTNNFPYLEKT :::::::::::::::::::::::::::::: XP_024 MAVEFLHELNVPFFKVGSGDTNNFPYLEKT 10 20 30 150 160 170 180 190 200 pF1KE2 AKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 AKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKL 40 50 60 70 80 90 210 220 230 240 250 260 pF1KE2 FPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 FPDIPIGYSGHETGIAISVAAVALGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSV 100 110 120 130 140 150 270 280 290 300 310 320 pF1KE2 RLVERALGSPTKQLLPCEMACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPED :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_024 RLVERALGSPTKQLLPCEMACNEKLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPED 160 170 180 190 200 210 330 340 350 pF1KE2 IFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS ::::::::::::::::::::::::::::::::: XP_024 IFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS 220 230 240 >>XP_011517090 (OMIM: 605202,610442) sialic acid synthas (234 aa) initn: 1387 init1: 1387 opt: 1388 Z-score: 1720.5 bits: 326.3 E(93482): 4.7e-89 Smith-Waterman score: 1388; 96.8% identity (97.7% similar) in 220 aa overlap (140-359:15-234) 110 120 130 140 150 160 pF1KE2 TASGMDEMAVEFLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVY : .. :::::::::::::::::::::: XP_011 MFHFSKLDLETLIIFLIWKRQPKKGRPMVISSGMQSMDTMKQVY 10 20 30 40 170 180 190 200 210 220 pF1KE2 QIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 QIVKPLNPNFCFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVA 50 60 70 80 90 100 230 240 250 260 270 280 pF1KE2 LGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 LGAKVLERHITLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNE 110 120 130 140 150 160 290 300 310 320 330 340 pF1KE2 KLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_011 KLGKSVVAKVKIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEEL 170 180 190 200 210 220 350 pF1KE2 VDNHGKKIKS :::::::::: XP_011 VDNHGKKIKS 230 >>XP_016870300 (OMIM: 605202,610442) sialic acid synthas (218 aa) initn: 1373 init1: 1373 opt: 1373 Z-score: 1702.4 bits: 322.8 E(93482): 4.8e-88 Smith-Waterman score: 1373; 100.0% identity (100.0% similar) in 210 aa overlap (150-359:9-218) 120 130 140 150 160 170 pF1KE2 EFLHELNVPFFKVGSGDTNNFPYLEKTAKKGRPMVISSGMQSMDTMKQVYQIVKPLNPNF :::::::::::::::::::::::::::::: XP_016 MVLVLDYSGRPMVISSGMQSMDTMKQVYQIVKPLNPNF 10 20 30 180 190 200 210 220 230 pF1KE2 CFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 CFLQCTSAYPLQPEDVNLRVISEYQKLFPDIPIGYSGHETGIAISVAAVALGAKVLERHI 40 50 60 70 80 90 240 250 260 270 280 290 pF1KE2 TLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNEKLGKSVVAKV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 TLDKTWKGSDHSASLEPGELAELVRSVRLVERALGSPTKQLLPCEMACNEKLGKSVVAKV 100 110 120 130 140 150 300 310 320 330 340 350 pF1KE2 KIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_016 KIPEGTILTMDMLTVKVGEPKGYPPEDIFNLVGKKVLVTVEEDDTIMEELVDNHGKKIKS 160 170 180 190 200 210 359 residues in 1 query sequences 65951994 residues in 93482 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Wed Jun 19 14:23:45 2019 done: Wed Jun 19 14:23:45 2019 Total Scan time: 3.840 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]