FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8608, 973 aa 1>>>pF1KB8608 973 - 973 aa - 973 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 10.5482+/-0.00137; mu= -3.3697+/- 0.081 mean_var=331.0712+/-69.853, 0's: 0 Z-trim(107.7): 67 B-trim: 86 in 2/51 Lambda= 0.070488 statistics sampled from 9696 (9730) to 9696 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.628), E-opt: 0.2 (0.299), width: 16 Scan time: 4.920 The best scores are: opt bits E(32554) CCDS77929.1 USO1 gene_id:8615|Hs108|chr4 ( 973) 6164 642.2 1.4e-183 CCDS75144.1 USO1 gene_id:8615|Hs108|chr4 ( 962) 5461 570.7 4.8e-162 >>CCDS77929.1 USO1 gene_id:8615|Hs108|chr4 (973 aa) initn: 6164 init1: 6164 opt: 6164 Z-score: 3409.1 bits: 642.2 E(32554): 1.4e-183 Smith-Waterman score: 6164; 99.5% identity (99.6% similar) in 973 aa overlap (1-973:1-973) 10 20 30 40 50 60 pF1KB8 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 AMEHLIHVLQTDRSGSEIIGYALDTLYNIISNEEEEEVDDVEEENSTRQSEDLGSQFTEI :::::::::::::: ::::::::::::::::::::::::::::::::::::::::::::: CCDS77 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNEEEEEVDDVEEENSTRQSEDLGSQFTEI 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB8 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIISEEGNSDGGIVVEDCLILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIISEEGNSDGGIVVEDCLILL 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB8 QNLLKNNNSNQYFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPTNP ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPTNP 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB8 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB8 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG 370 380 390 400 410 420 430 440 450 460 470 480 pF1KB8 NSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 NSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ 430 440 450 460 470 480 490 500 510 520 530 540 pF1KB8 QCTNILSQGDKIDRRGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAEN :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 QCTNILSQGDKIDRRGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAEN 490 500 510 520 530 540 550 560 570 580 590 600 pF1KB8 LGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 LGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHEL 550 560 570 580 590 600 610 620 630 640 650 660 pF1KB8 YSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 YSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHD 610 620 630 640 650 660 670 680 690 700 710 720 pF1KB8 DIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLG .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 NIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLG 670 680 690 700 710 720 730 740 750 760 770 780 pF1KB8 KDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 KDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTS 730 740 750 760 770 780 790 800 810 820 830 840 pF1KB8 GTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 GTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSV 790 800 810 820 830 840 850 860 870 880 890 900 pF1KB8 EVQGETETIIATKTTDVEGRLSALSQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQ :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: CCDS77 EVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQ 850 860 870 880 890 900 910 920 930 940 950 960 pF1KB8 TEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGGQEDED :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: CCDS77 TEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGDQEDED 910 920 930 940 950 960 970 pF1KB8 DESEDPGKDLDHI ::::::::::::: CCDS77 DESEDPGKDLDHI 970 >>CCDS75144.1 USO1 gene_id:8615|Hs108|chr4 (962 aa) initn: 3574 init1: 2975 opt: 5461 Z-score: 3022.8 bits: 570.7 E(32554): 4.8e-162 Smith-Waterman score: 6046; 98.4% identity (98.5% similar) in 973 aa overlap (1-973:1-962) 10 20 30 40 50 60 pF1KB8 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 MNFLRGVMGGQSAGPQHTEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKYRLEVGIQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 AMEHLIHVLQTDRSGSEIIGYALDTLYNIISNEEEEEVDDVEEENSTRQSEDLGSQFTEI :::::::::::::: ::::::::::::::::::::::: :::::::::::::::::: CCDS75 AMEHLIHVLQTDRSDSEIIGYALDTLYNIISNEEEEEV----EENSTRQSEDLGSQFTEI 70 80 90 100 110 130 140 150 160 170 180 pF1KB8 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 FIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLA 120 130 140 150 160 170 190 200 210 220 230 240 pF1KB8 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIISEEGNSDGGIVVEDCLILL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 DSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIISEEGNSDGGIVVEDCLILL 180 190 200 210 220 230 250 260 270 280 290 300 pF1KB8 QNLLKNNNSNQYFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPTNP ::::::::::: :::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 QNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPTNP 240 250 260 270 280 290 310 320 330 340 350 360 pF1KB8 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 PGATSSCQKAMFQCGLLQQLCTILMATGVPADILTETINTVSEVIRGCQVNQDYFASVNA 300 310 320 330 340 350 370 380 390 400 410 420 pF1KB8 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 PSNPPRPAIVVLLMSMVNERQPFVLRCAVLYCFQCFLYKNQKGQGEIVSTLLPSTIDATG 360 370 380 390 400 410 430 440 450 460 470 480 pF1KB8 NSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 NSVSAGQLLCGGLFSTDSLSNWCAAVALAHALQENATQKEQLLRVQLATSIGNPPVSLLQ 420 430 440 450 460 470 490 500 510 520 530 540 pF1KB8 QCTNILSQGDKIDRRGSKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAEN ::::::::: :::::::::::::::::::::::::::::::::::::::::::: CCDS75 QCTNILSQG-------SKIQTRVGLLMLLCTWLSNCPIAVTHFLHNSANVPFLTGQIAEN 480 490 500 510 520 550 560 570 580 590 600 pF1KB8 LGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHEL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 LGEEEQLVQGLCALLLGISIYFNDNSLESYMKEKLKQLIEKRIGKENFIEKLGFISKHEL 530 540 550 560 570 580 610 620 630 640 650 660 pF1KB8 YSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 YSRASQKPQPNFPSPEYMIFDHEFTKLVKELEGVITKAIYKSSEEDKKEEEVKKTLEQHD 590 600 610 620 630 640 670 680 690 700 710 720 pF1KB8 DIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLG .::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 NIVTHYKNMIREQDLQLEELRQQVSTLKCQNEQLQTAVTQQVSQIQQHKDQYNLLKIQLG 650 660 670 680 690 700 730 740 750 760 770 780 pF1KB8 KDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 KDNQHQGSYSEGAQMNGIQPEEIGRLREEIEELKRNQELLQSQLTEKDSMIENMKSSQTS 710 720 730 740 750 760 790 800 810 820 830 840 pF1KB8 GTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS75 GTNEQSSAIVSARDSEQVAELKQELATLKSQLNSQSVEITKLQTEKQELLQKTEAFAKSV 770 780 790 800 810 820 850 860 870 880 890 900 pF1KB8 EVQGETETIIATKTTDVEGRLSALSQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQ :::::::::::::::::::::::: ::::::::::::::::::::::::::::::::::: CCDS75 EVQGETETIIATKTTDVEGRLSALLQETKELKNEIKALSEERTAIKEQLDSSNSTIAILQ 830 840 850 860 870 880 910 920 930 940 950 960 pF1KB8 TEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGGQEDED :::::::::::::::::::::::::::::::::::::::::::::::::::::: ::::: CCDS75 TEKDKLELEITDSKKEQDDLLVLLADQDQKILSLKNKLKDLGHPVEEEDELESGDQEDED 890 900 910 920 930 940 970 pF1KB8 DESEDPGKDLDHI ::::::::::::: CCDS75 DESEDPGKDLDHI 950 960 973 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:34:01 2016 done: Mon Nov 7 03:34:02 2016 Total Scan time: 4.920 Total Display time: 0.070 Function used was FASTA [36.3.4 Apr, 2011]