Result of FASTA (omim) for
pFN21AB6773
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6773, 118 aa
1>>>pF1KB6773 118 - 118 aa - 118 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.5760+/-0.000232; mu= 7.8230+/- 0.015
mean_var=121.4169+/-24.844, 0's: 0 Z-trim(126.1): 16 B-trim: 4419 in 2/57
Lambda= 0.116395
statistics sampled from 51307 (51323) to 51307 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.871), E-opt: 0.2 (0.602), width: 16
Scan time: 5.360
The best scores are: opt bits E(85289)
NP_055046 (OMIM: 108600,185880) vesicle-associated ( 118) 788 141.1 4.1e-34
NP_058439 (OMIM: 108600,185880) vesicle-associated ( 116) 754 135.4 2.1e-32
NP_001284367 (OMIM: 108600,185880) vesicle-associa ( 116) 754 135.4 2.1e-32
NP_954740 (OMIM: 108600,185880) vesicle-associated ( 117) 754 135.4 2.1e-32
NP_055047 (OMIM: 185881) vesicle-associated membra ( 116) 609 111.0 4.5e-25
NP_001317054 (OMIM: 185881) vesicle-associated mem ( 118) 608 110.8 5.1e-25
NP_004772 (OMIM: 603657) vesicle-associated membra ( 100) 463 86.4 9.6e-18
XP_016858330 (OMIM: 603657) PREDICTED: vesicle-ass ( 122) 458 85.7 2e-17
NP_001172056 (OMIM: 606909) vesicle-associated mem ( 140) 270 54.1 7.1e-08
NP_003753 (OMIM: 606909) vesicle-associated membra ( 141) 270 54.1 7.1e-08
NP_003752 (OMIM: 603177) vesicle-associated membra ( 100) 224 46.3 1.2e-05
NP_006625 (OMIM: 607029) vesicle-associated membra ( 116) 187 40.1 0.00096
>>NP_055046 (OMIM: 108600,185880) vesicle-associated mem (118 aa)
initn: 788 init1: 788 opt: 788 Z-score: 733.5 bits: 141.1 E(85289): 4.1e-34
Smith-Waterman score: 788; 100.0% identity (100.0% similar) in 118 aa overlap (1-118:1-118)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
70 80 90 100 110
>>NP_058439 (OMIM: 108600,185880) vesicle-associated mem (116 aa)
initn: 754 init1: 754 opt: 754 Z-score: 702.8 bits: 135.4 E(85289): 2.1e-32
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_058 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRD
70 80 90 100 110
>>NP_001284367 (OMIM: 108600,185880) vesicle-associated (116 aa)
initn: 754 init1: 754 opt: 754 Z-score: 702.8 bits: 135.4 E(85289): 2.1e-32
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVRRG
70 80 90 100 110
>>NP_954740 (OMIM: 108600,185880) vesicle-associated mem (117 aa)
initn: 754 init1: 754 opt: 754 Z-score: 702.7 bits: 135.4 E(85289): 2.1e-32
Smith-Waterman score: 754; 100.0% identity (100.0% similar) in 113 aa overlap (1-113:1-113)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
10 20 30 40 50 60
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
:::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_954 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVSKYR
70 80 90 100 110
>>NP_055047 (OMIM: 185881) vesicle-associated membrane p (116 aa)
initn: 628 init1: 597 opt: 609 Z-score: 571.2 bits: 111.0 E(85289): 4.5e-25
Smith-Waterman score: 609; 78.3% identity (89.2% similar) in 120 aa overlap (1-118:1-116)
10 20 30 40 50
pF1KB6 MSAPAQ--PPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLER
::: : ::: . : ::::.::::.:::::::::::::.:::::.::::::::::
NP_055 MSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVLER
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 DQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..:: :
NP_055 DQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYFST
60 70 80 90 100 110
>>NP_001317054 (OMIM: 185881) vesicle-associated membran (118 aa)
initn: 628 init1: 597 opt: 608 Z-score: 570.2 bits: 110.8 E(85289): 5.1e-25
Smith-Waterman score: 608; 77.8% identity (90.6% similar) in 117 aa overlap (2-118:6-118)
10 20 30 40 50
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVL
.: . ::: . : ::::.::::.:::::::::::::.:::::.::::::::
NP_001 MDRSATAATAPPA----APAGEGGPPAPPPNLTSNRRLQQTQAQVDEVVDIMRVNVDKVL
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 ERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYF
::::::::::::::::::::::::.::::::::::::: ::::.::.:::::...:..::
NP_001 ERDQKLSELDDRADALQAGASQFETSAAKLKRKYWWKNLKMMIILGVICAIILIIIIVYF
60 70 80 90 100 110
pF1KB6 FT
:
NP_001 ST
>>NP_004772 (OMIM: 603657) vesicle-associated membrane p (100 aa)
initn: 454 init1: 437 opt: 463 Z-score: 439.6 bits: 86.4 E(85289): 9.6e-18
Smith-Waterman score: 463; 73.1% identity (88.2% similar) in 93 aa overlap (23-115:4-96)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
:: ::::::::: ::.:::::.::::::::::::
NP_004 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
10 20 30 40
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
::::::::::::::::::::.:::::::::::::::: . .. .:....:...
NP_004 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAIGITVLVIFIIIIIVWVVSS
50 60 70 80 90 100
>>XP_016858330 (OMIM: 603657) PREDICTED: vesicle-associa (122 aa)
initn: 454 init1: 437 opt: 458 Z-score: 433.8 bits: 85.7 E(85289): 2e-17
Smith-Waterman score: 458; 76.1% identity (84.8% similar) in 92 aa overlap (23-114:4-94)
10 20 30 40 50 60
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIRVNVDKVLERDQ
:: ::::::::: ::.:::::.::::::::::::
XP_016 MSTGPTAATGSNRRLQQTQNQVDEVVDIMRVNVDKVLERDQ
10 20 30 40
70 80 90 100 110
pF1KB6 KLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIVVVIVIYFFT
::::::::::::::::::::.:::::::::::::::: . : .: ..:.:
XP_016 KLSELDDRADALQAGASQFETSAAKLKRKYWWKNCKMWAI-GITVLVIFIIIIIGELPFS
50 60 70 80 90 100
XP_016 KLIGKVFSMCSQTIDFVYKNSD
110 120
>>NP_001172056 (OMIM: 606909) vesicle-associated membran (140 aa)
initn: 258 init1: 237 opt: 270 Z-score: 262.4 bits: 54.1 E(85289): 7.1e-08
Smith-Waterman score: 270; 35.8% identity (78.9% similar) in 95 aa overlap (20-114:39-132)
10 20 30 40
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIR
:: :: . : .....: ::.::.:...
NP_001 LNDDDVTGSVKSERRNLLEDDSDEEEDFFLGPSGPRFG-PRNDKIKHVQNQVDEVIDVMQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 VNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIV
:. ::.:: ..:.::.:....:. .:. : . . .:.:..::..::. ... . ::..
NP_001 ENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILL
70 80 90 100 110 120
110
pF1KB6 VVIVIYFFT
.::.:
NP_001 LVIIILIVMKYRT
130 140
>>NP_003753 (OMIM: 606909) vesicle-associated membrane p (141 aa)
initn: 258 init1: 237 opt: 270 Z-score: 262.4 bits: 54.1 E(85289): 7.1e-08
Smith-Waterman score: 270; 35.8% identity (78.9% similar) in 95 aa overlap (20-114:40-133)
10 20 30 40
pF1KB6 MSAPAQPPAEGTEGTAPGGGPPGPPPNMTSNRRLQQTQAQVEEVVDIIR
:: :: . : .....: ::.::.:...
NP_003 NDDDVTGSVKSERRNLLEDDSDEEEDFFLRGPSGPRFG-PRNDKIKHVQNQVDEVIDVMQ
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB6 VNVDKVLERDQKLSELDDRADALQAGASQFESSAAKLKRKYWWKNCKMMIMLGAICAIIV
:. ::.:: ..:.::.:....:. .:. : . . .:.:..::..::. ... . ::..
NP_003 ENITKVIERGERLDELQDKSESLSDNATAFSNRSKQLRRQMWWRGCKIKAIMALVAAILL
70 80 90 100 110 120
110
pF1KB6 VVIVIYFFT
.::.:
NP_003 LVIIILIVMKYRT
130 140
118 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 20:08:53 2016 done: Sat Nov 5 20:08:54 2016
Total Scan time: 5.360 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]