(Circular) (Six-base) MAPSORT of: pFN21AE0105.seq Check: 5696 from: 1 to: 5248 pFN21AE0105 5248 bp With 182 enzymes: SgfI * October 20, 2009 10:44 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3058 278 Size: 53 83 186 936 1522 2468 Fragments arranged by size: 2468 1522 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2591 1937 Size: 654 4594 Acc65I G'GTAC_C Cuts at: 2569 2569 Size: 5248 AclI AA'CG_TT Cuts at: 1563 3375 3748 1563 Size: 1812 373 3063 Fragments arranged by size: 3063 1812 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3311 4695 4963 1632 Size: 1679 1384 268 1917 Fragments arranged by size: 1917 1679 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5051 AflIII A'CryG_T Cuts at: 1203 4147 5124 1203 Size: 2944 977 1327 Fragments arranged by size: 2944 1327 977 AgeI A'CCGG_T Cuts at: 4079 4079 Size: 5248 AhdI GACnn_n'nnGTC Cuts at: 3977 3977 Size: 5248 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5248 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5248 AlwNI CAG_nnn'CTG Cuts at: 2991 4563 2991 Size: 1572 3676 ApaLI G'TGCA_C Cuts at: 3305 4461 3305 Size: 1156 4092 ApoI r'AATT_y Cuts at: 1493 2436 2557 2783 2935 5044 1493 Size: 943 121 226 152 2109 1697 Fragments arranged by size: 2109 1697 943 226 152 121 AseI AT'TA_AT Cuts at: 160 1032 3802 160 Size: 872 2770 1606 Fragments arranged by size: 2770 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5248 AvaI C'yCGr_G Cuts at: 1870 1943 2573 1870 Size: 73 630 4545 Fragments arranged by size: 4545 630 73 BamHI G'GATC_C Cuts at: 2578 2945 2578 Size: 367 4881 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2501 2569 4024 618 Size: 325 217 627 714 68 1455 1842 Fragments arranged by size: 1842 1455 714 627 325 217 68 BanII G_rGCy'C Cuts at: 1391 2126 2567 1391 Size: 735 441 4072 Fragments arranged by size: 4072 735 441 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2544 928 Size: 971 645 3632 Fragments arranged by size: 3632 971 645 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3439 3473 1903 Size: 34 1502 34 3678 Fragments arranged by size: 3678 1502 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3140 4350 3140 Size: 1210 4038 BclI T'GATC_A Cuts at: 1548 1548 Size: 5248 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3859 136 Size: 107 122 71 631 605 2187 1525 Fragments arranged by size: 2187 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5243 5243 Size: 5248 BlpI GC'TnA_GC Cuts at: 2120 2222 2665 2120 Size: 102 443 4703 Fragments arranged by size: 4703 443 102 Bme1580I G_kGCm'C Cuts at: 1790 3309 4465 1790 Size: 1519 1156 2573 Fragments arranged by size: 2573 1519 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5248 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2464 2979 3937 Size: 416 53 83 399 24 1047 515 958 Cuts at: 3937 442 Size: 1753 Fragments arranged by size: 1753 1047 958 515 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5248 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 3908 1239 Size: 2669 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3373 4238 4536 3373 Size: 865 298 4085 Fragments arranged by size: 4085 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3911 882 Size: 617 2412 2219 Fragments arranged by size: 2412 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3039 493 Size: 711 1835 2702 Fragments arranged by size: 2702 1835 711 BsaBI GATnn'nnATC Cuts at: 2309 5242 2309 Size: 2933 2315 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3055 3437 4072 275 Size: 53 83 186 936 1522 382 635 1451 Fragments arranged by size: 1522 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3681 4079 4353 4500 4911 3681 Size: 398 274 147 411 4018 Fragments arranged by size: 4018 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5023 Fragments arranged by size: 5023 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2045 1186 Size: 859 4389 BseYI C'CCAG_C Cuts at: 4451 4947 4451 Size: 496 4752 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4675 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2698 3459 4487 1540 Size: 275 186 697 761 1028 2301 Fragments arranged by size: 2301 1028 761 697 275 186 BsiHKAI G_wGCw'C Cuts at: 3309 3394 4465 3309 Size: 85 1071 4092 Fragments arranged by size: 4092 1071 85 BsmI GAATG_Cn' Cuts at: 2288 2759 2852 2288 Size: 471 93 4684 Fragments arranged by size: 4684 471 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2126 2567 3309 3394 4465 1391 Size: 399 336 441 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 441 399 336 85 BspEI T'CCGG_A Cuts at: 4911 4911 Size: 5248 BspHI T'CATG_A Cuts at: 3137 4867 3137 Size: 1730 3518 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2603 844 Size: 1759 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3135 1394 Size: 429 1312 3507 Fragments arranged by size: 3507 1312 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2283 3743 3917 65 Size: 1183 1035 1460 174 1396 Fragments arranged by size: 1460 1396 1183 1035 174 BsrFI r'CCGG_y Cuts at: 1700 1810 3892 4079 1700 Size: 110 2082 187 2869 Fragments arranged by size: 2869 2082 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5248 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5248 BssSI C'ACGA_G Cuts at: 3308 4320 3308 Size: 1012 4236 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5248 BstBI TT'CG_AA Cuts at: 4052 4052 Size: 5248 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5248 BstYI r'GATC_y Cuts at: 1972 2321 2578 2945 3330 3347 4799 4885 4897 Size: 349 257 367 385 17 1452 86 12 Cuts at: 4897 5243 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 385 367 349 346 257 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3757 Fragments arranged by size: 3757 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4509 Fragments arranged by size: 4509 683 56 BtsI GCAGTG_nn' Cuts at: 2206 2764 3558 3578 2206 Size: 558 794 20 3876 Fragments arranged by size: 3876 794 558 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5248 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5213 DraI TTT'AAA Cuts at: 2552 2552 Size: 5248 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4255 809 Size: 507 2939 1802 Fragments arranged by size: 2939 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2695 3584 5213 Size: 54 1425 50 275 18 865 889 1629 Cuts at: 5213 8 Size: 43 Fragments arranged by size: 1629 1425 889 865 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2695 1537 Size: 275 883 4090 Fragments arranged by size: 4090 883 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3178 1353 Size: 1825 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3835 4209 4355 387 Size: 1064 138 2246 374 146 1280 Fragments arranged by size: 2246 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3311 3908 4695 4963 1239 Size: 393 1679 597 787 268 1524 Fragments arranged by size: 1679 1524 787 597 393 268 EcoRI G'AATT_C Cuts at: 2557 2935 2557 Size: 378 4870 FspI TGC'GCA Cuts at: 3754 3754 Size: 5248 HaeII r_GCGC'y Cuts at: 1678 2096 2271 4395 1678 Size: 418 175 2124 2531 Fragments arranged by size: 2531 2124 418 175 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2230 2262 3889 3921 3963 Size: 32 135 32 658 32 1627 32 42 Cuts at: 3963 3995 1373 Size: 32 2626 Fragments arranged by size: 2626 1627 658 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2592 2838 669 Size: 988 281 654 246 3079 Fragments arranged by size: 3079 988 654 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5248 HpaI GTT'AAC Cuts at: 2838 2838 Size: 5248 KpnI G_GTAC'C Cuts at: 2573 2573 Size: 5248 MfeI C'AATT_G Cuts at: 2847 2847 Size: 5248 MluI A'CGCG_T Cuts at: 5124 5124 Size: 5248 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4362 4546 1305 Size: 3057 184 2007 Fragments arranged by size: 3057 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3426 Fragments arranged by size: 3426 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3206 3565 3724 518 Size: 648 2040 359 159 2042 Fragments arranged by size: 2042 2040 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2022 2141 2664 3341 4489 4734 1606 Size: 416 119 523 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 523 416 245 119 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3757 Fragments arranged by size: 3757 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5248 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5248 NotI GC'GGCC_GC Cuts at: 2695 2695 Size: 5248 NspI r_CATG'y Cuts at: 1132 1229 2606 4151 1132 Size: 97 1377 1545 2229 Fragments arranged by size: 2229 1545 1377 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5248 PciI A'CATG_T Cuts at: 4147 4147 Size: 5248 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5248 PmeI GTTT'AAAC Cuts at: 2552 2552 Size: 5248 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3317 3349 4830 4862 3317 Size: 32 1481 32 3703 Fragments arranged by size: 3703 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5248 PsiI TTA'TAA Cuts at: 2818 2818 Size: 5248 PstI C_TGCA'G Cuts at: 830 2600 830 Size: 1770 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5248 PvuII CAG'CTG Cuts at: 2141 2141 Size: 5248 SalI G'TCGA_C Cuts at: 1936 2590 1936 Size: 654 4594 SbfI CC_TGCA'GG Cuts at: 2600 2600 Size: 5248 ScaI AGT'ACT Cuts at: 2153 3496 5208 2153 Size: 1343 1712 2193 Fragments arranged by size: 2193 1712 1343 SfcI C'TryA_G Cuts at: 826 1045 2338 2596 3731 4412 4603 826 Size: 219 1293 258 1135 681 191 1471 Fragments arranged by size: 1471 1293 1135 681 258 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5248 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5248 SmaI CCC'GGG Cuts at: 1872 2575 1872 Size: 703 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3352 4253 4515 820 Size: 197 926 1409 901 262 1553 Fragments arranged by size: 1553 1409 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3039 493 Size: 2546 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5248 SphI G_CATG'C Cuts at: 1132 2606 1132 Size: 1474 3774 SspI AAT'ATT Cuts at: 5 52 3172 5 Size: 47 3120 2081 Fragments arranged by size: 3120 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5248 StyI C'CwwG_G Cuts at: 513 1065 2004 2687 513 Size: 552 939 683 3074 Fragments arranged by size: 3074 939 683 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3275 3292 3445 3630 4075 325 Size: 1255 1695 17 153 185 445 1498 Fragments arranged by size: 1695 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2151 3494 5206 Size: 274 80 33 51 1443 174 1343 1712 Cuts at: 5206 96 Size: 138 Fragments arranged by size: 1712 1443 1343 274 174 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2198 2230 5208 5240 2198 Size: 32 2978 32 2206 Fragments arranged by size: 2978 2206 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5248 XbaI T'CTAG_A Cuts at: 2584 2584 Size: 5248 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5248 XmaI C'CCGG_G Cuts at: 1870 2573 1870 Size: 703 4545 XmnI GAAnn'nnTTC Cuts at: 3377 3377 Size: 5248 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3056 276 Size: 53 83 186 936 1522 2468 Fragments arranged by size: 2468 1522 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI