FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6779, 119 aa
  1>>>pF1KB6779 119 - 119 aa - 119 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6987+/-0.000949; mu= 10.1882+/- 0.058
 mean_var=105.9881+/-21.166, 0's: 0 Z-trim(108.6): 34  B-trim: 117 in 1/48
 Lambda= 0.124579
 statistics sampled from 10308 (10331) to 10308 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.697), E-opt: 0.2 (0.317), width:  16
 Scan time:  1.360

The best scores are:                                      opt bits E(32554)
CCDS32801.1 SNRPD1 gene_id:6632|Hs108|chr18        ( 119)  771 148.1 1.2e-36


>>CCDS32801.1 SNRPD1 gene_id:6632|Hs108|chr18             (119 aa)
 initn: 771 init1: 771 opt: 771  Z-score: 771.5  bits: 148.1 E(32554): 1.2e-36
Smith-Waterman score: 771; 100.0% identity (100.0% similar) in 119 aa overlap (1-119:1-119)

               10        20        30        40        50        60
pF1KB6 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSI
               10        20        30        40        50        60

               70        80        90       100       110         
pF1KB6 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 RGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREAVAGRGRGRGRGRGRGRGRGRGGPRR
               70        80        90       100       110         




119 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 23:59:25 2016 done: Fri Nov  4 23:59:25 2016
 Total Scan time:  1.360 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]