(Circular) (Six-base) MAPSORT of: pFN21AB6366.seq Check: 1427 from: 1 to: 5599 pFN21AB6366 5599 bp With 182 enzymes: SgfI * October 20, 2009 10:40 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3409 278 Size: 53 83 186 936 1873 2468 Fragments arranged by size: 2468 1873 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2397 2942 1937 Size: 460 545 4594 Fragments arranged by size: 4594 545 460 Acc65I G'GTAC_C Cuts at: 2920 2920 Size: 5599 AclI AA'CG_TT Cuts at: 1563 3726 4099 1563 Size: 2163 373 3063 Fragments arranged by size: 3063 2163 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3662 5046 5314 1632 Size: 2030 1384 268 1917 Fragments arranged by size: 2030 1917 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5402 AflIII A'CryG_T Cuts at: 1203 4498 5475 1203 Size: 3295 977 1327 Fragments arranged by size: 3295 1327 977 AgeI A'CCGG_T Cuts at: 4430 4430 Size: 5599 AhdI GACnn_n'nnGTC Cuts at: 4328 4328 Size: 5599 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5599 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5599 AlwNI CAG_nnn'CTG Cuts at: 3342 4914 3342 Size: 1572 4027 ApaLI G'TGCA_C Cuts at: 2627 3656 4812 2627 Size: 1029 1156 3414 Fragments arranged by size: 3414 1156 1029 ApoI r'AATT_y Cuts at: 1493 2908 3134 3286 5395 1493 Size: 1415 226 152 2109 1697 Fragments arranged by size: 2109 1697 1415 226 152 AseI AT'TA_AT Cuts at: 160 1032 4153 160 Size: 872 3121 1606 Fragments arranged by size: 3121 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5599 AvaI C'yCGr_G Cuts at: 1870 1943 2924 1870 Size: 73 981 4545 Fragments arranged by size: 4545 981 73 BamHI G'GATC_C Cuts at: 2929 3296 2929 Size: 367 5232 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2447 2822 2920 4375 618 Size: 325 217 627 660 375 98 1455 1842 Fragments arranged by size: 1842 1455 660 627 375 325 217 98 BanII G_rGCy'C Cuts at: 1391 2523 2918 1391 Size: 1132 395 4072 Fragments arranged by size: 4072 1132 395 BbeI G_GCGC'C Cuts at: 2451 2451 Size: 5599 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4628 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3790 3824 1903 Size: 34 1853 34 3678 Fragments arranged by size: 3678 1853 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3491 4701 3491 Size: 1210 4389 BclI T'GATC_A Cuts at: 1548 2011 1548 Size: 463 5136 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2375 4210 136 Size: 107 122 71 631 605 703 1835 1525 Fragments arranged by size: 1835 1525 703 631 605 122 107 71 BglII A'GATC_T Cuts at: 2493 5594 2493 Size: 3101 2498 BlpI GC'TnA_GC Cuts at: 3016 3016 Size: 5599 Bme1580I G_kGCm'C Cuts at: 1790 2631 3660 4816 1790 Size: 841 1029 1156 2573 Fragments arranged by size: 2573 1156 1029 841 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5599 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3330 4288 442 Size: 416 53 83 399 24 1913 958 1753 Fragments arranged by size: 1913 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5599 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2236 2797 4259 1239 Size: 997 561 1462 2579 Fragments arranged by size: 2579 1462 997 561 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3724 4589 4887 3724 Size: 865 298 4436 Fragments arranged by size: 4436 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4262 882 Size: 617 2763 2219 Fragments arranged by size: 2763 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3390 493 Size: 711 2186 2702 Fragments arranged by size: 2702 2186 711 BsaBI GATnn'nnATC Cuts at: 5593 5593 Size: 5599 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2052 2357 2448 3406 Size: 53 83 186 936 519 305 91 958 Cuts at: 3406 3788 4423 275 Size: 382 635 1451 Fragments arranged by size: 1451 958 936 635 519 382 305 186 91 83 53 BsaWI w'CCGG_w Cuts at: 2360 4032 4430 4704 4851 5262 2360 Size: 1672 398 274 147 411 2697 Fragments arranged by size: 2697 1672 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5374 Fragments arranged by size: 5374 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5599 BseYI C'CCAG_C Cuts at: 2372 2454 4802 5298 2372 Size: 82 2348 496 2673 Fragments arranged by size: 2673 2348 496 82 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5026 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2082 2734 3049 3810 4838 1540 Size: 275 186 81 652 315 761 1028 2301 Fragments arranged by size: 2301 1028 761 652 315 275 186 81 BsiHKAI G_wGCw'C Cuts at: 2631 3660 3745 4816 2631 Size: 1029 85 1071 3414 Fragments arranged by size: 3414 1071 1029 85 BsmI GAATG_Cn' Cuts at: 3110 3203 3110 Size: 93 5506 BsmBI CGTCTCn'nnnn_ Cuts at: 2071 2545 2071 Size: 474 5125 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2523 2631 2918 3660 3745 4816 1391 Size: 399 733 108 287 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 733 399 287 108 85 BspEI T'CCGG_A Cuts at: 5262 5262 Size: 5599 BspHI T'CATG_A Cuts at: 3488 5218 3488 Size: 1730 3869 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2104 2954 844 Size: 1260 850 3489 Fragments arranged by size: 3489 1260 850 BsrBI CCG'CTC Cuts at: 1394 1823 3486 1394 Size: 429 1663 3507 Fragments arranged by size: 3507 1663 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4094 4268 65 Size: 1183 2846 174 1396 Fragments arranged by size: 2846 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4243 4430 1700 Size: 110 2433 187 2869 Fragments arranged by size: 2869 2433 187 110 BsrGI T'GTAC_A Cuts at: 96 2754 96 Size: 2658 2941 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5599 BssSI C'ACGA_G Cuts at: 3659 4671 3659 Size: 1012 4587 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5599 BstBI TT'CG_AA Cuts at: 4403 4403 Size: 5599 BstEII G'GTnAC_C Cuts at: 1184 2222 2348 1184 Size: 1038 126 4435 Fragments arranged by size: 4435 1038 126 BstYI r'GATC_y Cuts at: 1972 2493 2929 3296 3681 3698 5150 5236 5248 Size: 521 436 367 385 17 1452 86 12 Cuts at: 5248 5594 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 521 436 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2190 2513 2190 Size: 323 5276 BtgI C'CryG_G Cuts at: 513 1065 2004 2076 2467 513 Size: 552 939 72 391 3645 Fragments arranged by size: 3645 939 552 391 72 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4860 Fragments arranged by size: 4860 683 56 BtsI GCAGTG_nn' Cuts at: 3115 3909 3929 3115 Size: 794 20 4785 Fragments arranged by size: 4785 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5599 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5564 DraI TTT'AAA Cuts at: 2903 2903 Size: 5599 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4606 809 Size: 507 3290 1802 Fragments arranged by size: 3290 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2043 2229 2731 Size: 54 1425 50 275 18 213 186 502 Cuts at: 2731 3046 3935 5564 8 Size: 315 889 1629 43 Fragments arranged by size: 1629 1425 889 502 315 275 213 186 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2731 3046 1537 Size: 275 919 315 4090 Fragments arranged by size: 4090 919 315 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2303 3529 1353 Size: 950 1226 3423 Fragments arranged by size: 3423 1226 950 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4186 4560 4706 387 Size: 1064 138 2597 374 146 1280 Fragments arranged by size: 2597 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2236 2797 3662 4259 5046 5314 1239 Size: 393 604 561 865 597 787 268 1524 Fragments arranged by size: 1524 865 787 604 597 561 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2215 2215 Size: 5599 EcoRI G'AATT_C Cuts at: 2908 3286 2908 Size: 378 5221 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2314 2830 2314 Size: 516 5083 FspI TGC'GCA Cuts at: 4105 4105 Size: 5599 HaeII r_GCGC'y Cuts at: 1678 2338 2451 4746 1678 Size: 660 113 2295 2531 Fragments arranged by size: 2531 2295 660 113 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4240 4272 4314 4346 1373 Size: 32 135 32 2668 32 42 32 2626 Fragments arranged by size: 2668 2626 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2770 2943 3189 669 Size: 988 281 832 173 246 3079 Fragments arranged by size: 3079 988 832 281 246 173 HindIII A'AGCT_T Cuts at: 748 748 Size: 5599 HpaI GTT'AAC Cuts at: 3189 3189 Size: 5599 KasI G'GCGC_C Cuts at: 2447 2447 Size: 5599 KpnI G_GTAC'C Cuts at: 2924 2924 Size: 5599 MfeI C'AATT_G Cuts at: 3198 3198 Size: 5599 MluI A'CGCG_T Cuts at: 5475 5475 Size: 5599 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4713 4897 1305 Size: 3408 184 2007 Fragments arranged by size: 3408 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2231 10 Size: 54 1425 343 399 3378 Fragments arranged by size: 3378 1425 399 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2636 3557 3916 4075 518 Size: 648 1470 921 359 159 2042 Fragments arranged by size: 2042 1470 921 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2060 2078 2372 2404 3015 3692 4840 5085 Size: 454 18 294 32 611 677 1148 245 Cuts at: 5085 1606 Size: 2120 Fragments arranged by size: 2120 1148 677 611 454 294 245 32 18 NarI GG'CG_CC Cuts at: 2448 2448 Size: 5599 NcoI C'CATG_G Cuts at: 513 1065 2004 2467 513 Size: 552 939 463 3645 Fragments arranged by size: 3645 939 552 463 NdeI CA'TA_TG Cuts at: 387 387 Size: 5599 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5599 NotI GC'GGCC_GC Cuts at: 3046 3046 Size: 5599 NspI r_CATG'y Cuts at: 1132 1229 2126 2957 4502 1132 Size: 97 897 831 1545 2229 Fragments arranged by size: 2229 1545 897 831 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5599 PciI A'CATG_T Cuts at: 4498 4498 Size: 5599 PflMI CCAn_nnn'nTGG Cuts at: 1108 2473 1108 Size: 1365 4234 PmeI GTTT'AAAC Cuts at: 2903 2903 Size: 5599 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3668 3700 5181 5213 3668 Size: 32 1481 32 4054 Fragments arranged by size: 4054 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 2078 2669 1613 Size: 465 591 4543 Fragments arranged by size: 4543 591 465 PsiI TTA'TAA Cuts at: 3169 3169 Size: 5599 PstI C_TGCA'G Cuts at: 830 2115 2951 830 Size: 1285 836 3478 Fragments arranged by size: 3478 1285 836 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5599 SacII CC_GC'GG Cuts at: 2079 2079 Size: 5599 SalI G'TCGA_C Cuts at: 1936 2941 1936 Size: 1005 4594 SapI GCTCTTCn'nnn_ Cuts at: 2303 2303 Size: 5599 SbfI CC_TGCA'GG Cuts at: 2951 2951 Size: 5599 ScaI AGT'ACT Cuts at: 3847 5559 3847 Size: 1712 3887 SexAI A'CCwGG_T Cuts at: 2420 2420 Size: 5599 SfcI C'TryA_G Cuts at: 826 1045 2111 2563 2947 4082 4763 4954 826 Size: 219 1066 452 384 1135 681 191 1471 Fragments arranged by size: 1471 1135 1066 681 452 384 219 191 SfiI GGCCn_nnn'nGGCC Cuts at: 2375 2375 Size: 5599 SfoI GGC'GCC Cuts at: 2449 2449 Size: 5599 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5599 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5599 SmaI CCC'GGG Cuts at: 1872 2926 1872 Size: 1054 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3703 4604 4866 820 Size: 197 926 1760 901 262 1553 Fragments arranged by size: 1760 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3390 493 Size: 2897 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5599 SphI G_CATG'C Cuts at: 1132 2126 2957 1132 Size: 994 831 3774 Fragments arranged by size: 3774 994 831 SspI AAT'ATT Cuts at: 5 52 3523 5 Size: 47 3471 2081 Fragments arranged by size: 3471 2081 47 StuI AGG'CCT Cuts at: 1517 2810 1517 Size: 1293 4306 StyI C'CwwG_G Cuts at: 513 1065 2004 2467 2548 2598 2805 3038 513 Size: 552 939 463 81 50 207 233 3074 Fragments arranged by size: 3074 939 552 463 233 207 81 50 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 1997 2270 3626 3643 3796 3981 4426 Size: 1255 417 273 1356 17 153 185 445 Cuts at: 4426 325 Size: 1498 Fragments arranged by size: 1498 1356 1255 445 417 273 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2154 2286 2754 Size: 274 80 33 51 1443 177 132 468 Cuts at: 2754 3845 5557 96 Size: 1091 1712 138 Fragments arranged by size: 1712 1443 1091 468 274 177 138 132 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5559 5591 5559 Size: 32 5567 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5599 XbaI T'CTAG_A Cuts at: 2935 2935 Size: 5599 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5599 XmaI C'CCGG_G Cuts at: 1870 2924 1870 Size: 1054 4545 XmnI GAAnn'nnTTC Cuts at: 3728 3728 Size: 5599 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3407 276 Size: 53 83 186 936 1873 2468 Fragments arranged by size: 2468 1873 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NarI NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI SacII SalI SapI SbfI ScaI SexAI SfcI SfiI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbvCI BfrBI BplI Bpu10I BsiWI BstXI BstZ17I DraIII EcoICRI EcoO109I EcoRV FseI FspAI NaeI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII RsrII SacI SanDI SrfI SwaI XcmI