FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB8343, 228 aa 1>>>pF1KB8343 228 - 228 aa - 228 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.0311+/-0.000747; mu= 15.7249+/- 0.045 mean_var=69.2415+/-13.815, 0's: 0 Z-trim(108.8): 33 B-trim: 2 in 1/49 Lambda= 0.154131 statistics sampled from 10418 (10450) to 10418 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.708), E-opt: 0.2 (0.321), width: 16 Scan time: 1.770 The best scores are: opt bits E(32554) CCDS60324.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 228) 1558 355.0 2.3e-98 CCDS1209.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 335) 1440 328.9 2.4e-90 CCDS60321.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 296) 911 211.2 5.7e-55 CCDS72957.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 241) 832 193.6 9.4e-50 CCDS72956.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 149) 760 177.4 4.3e-45 CCDS60325.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 188) 760 177.5 5.1e-45 CCDS60322.1 SLAMF7 gene_id:57823|Hs108|chr1 ( 204) 535 127.5 6.3e-30 CCDS81388.1 CD84 gene_id:8832|Hs108|chr1 ( 339) 323 80.5 1.5e-15 CCDS53396.1 CD84 gene_id:8832|Hs108|chr1 ( 345) 318 79.4 3.2e-15 CCDS1191.1 SLAMF9 gene_id:89886|Hs108|chr1 ( 289) 270 68.7 4.5e-12 CCDS65695.1 LY9 gene_id:4063|Hs108|chr1 ( 641) 273 69.6 5.3e-12 CCDS30916.1 LY9 gene_id:4063|Hs108|chr1 ( 655) 273 69.6 5.4e-12 CCDS1206.1 CD84 gene_id:8832|Hs108|chr1 ( 328) 261 66.7 2e-11 CCDS53397.1 CD84 gene_id:8832|Hs108|chr1 ( 272) 259 66.2 2.4e-11 CCDS53395.1 CD84 gene_id:8832|Hs108|chr1 ( 214) 256 65.5 3.1e-11 CCDS1205.1 SLAMF6 gene_id:114836|Hs108|chr1 ( 331) 258 66.1 3.2e-11 CCDS53393.1 SLAMF6 gene_id:114836|Hs108|chr1 ( 221) 252 64.6 5.9e-11 CCDS53394.1 SLAMF6 gene_id:114836|Hs108|chr1 ( 332) 253 64.9 6.9e-11 >>CCDS60324.1 SLAMF7 gene_id:57823|Hs108|chr1 (228 aa) initn: 1558 init1: 1558 opt: 1558 Z-score: 1879.5 bits: 355.0 E(32554): 2.3e-98 Smith-Waterman score: 1558; 100.0% identity (100.0% similar) in 228 aa overlap (1-228:1-228) 10 20 30 40 50 60 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTI :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTI 130 140 150 160 170 180 190 200 210 220 pF1KB8 PHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI :::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 PHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI 190 200 210 220 >>CCDS1209.1 SLAMF7 gene_id:57823|Hs108|chr1 (335 aa) initn: 1544 init1: 1435 opt: 1440 Z-score: 1735.3 bits: 328.9 E(32554): 2.4e-90 Smith-Waterman score: 1440; 97.7% identity (99.1% similar) in 217 aa overlap (12-228:120-335) 10 20 30 40 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTN :.: .. ::::::::::::::::::::::: CCDS12 LKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVL-HVYEHLSKPKVTMGLQSNKNGTCVTN 90 100 110 120 130 140 50 60 70 80 90 100 pF1KB8 LTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 LTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSP 150 160 170 180 190 200 110 120 130 140 150 160 pF1KB8 ILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDIC :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 ILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDIC 210 220 230 240 250 260 170 180 190 200 210 220 pF1KB8 RETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS12 RETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRL 270 280 290 300 310 320 pF1KB8 FAYENVI ::::::: CCDS12 FAYENVI 330 >>CCDS60321.1 SLAMF7 gene_id:57823|Hs108|chr1 (296 aa) initn: 1015 init1: 906 opt: 911 Z-score: 1100.4 bits: 211.2 E(32554): 5.7e-55 Smith-Waterman score: 911; 96.4% identity (98.6% similar) in 139 aa overlap (12-150:120-257) 10 20 30 40 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTN :.: .. ::::::::::::::::::::::: CCDS60 LKLSKLKKNDSGIYYVGIYSSSLQQPSTQEYVL-HVYEHLSKPKVTMGLQSNKNGTCVTN 90 100 110 120 130 140 50 60 70 80 90 100 pF1KB8 LTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 LTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSP 150 160 170 180 190 200 110 120 130 140 150 160 pF1KB8 ILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDIC ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 ILARKLCEGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEENNPKGRSSKYG 210 220 230 240 250 260 170 180 190 200 210 220 pF1KB8 RETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRL CCDS60 LLHCGNTEKDGKSPLTAHDARHTKAICL 270 280 290 >>CCDS72957.1 SLAMF7 gene_id:57823|Hs108|chr1 (241 aa) initn: 828 init1: 828 opt: 832 Z-score: 1006.7 bits: 193.6 E(32554): 9.4e-50 Smith-Waterman score: 1522; 94.6% identity (94.6% similar) in 241 aa overlap (1-228:1-241) 10 20 30 40 50 60 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL 10 20 30 40 50 60 70 80 90 100 110 pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEG---------- :::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGDCLSPLHRRL 70 80 90 100 110 120 120 130 140 150 160 pF1KB8 ---AADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNI ::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 CPGAADDPDSSMVLLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNI 130 140 150 160 170 180 170 180 190 200 210 220 pF1KB8 CPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 CPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENV 190 200 210 220 230 240 pF1KB8 I : CCDS72 I >>CCDS72956.1 SLAMF7 gene_id:57823|Hs108|chr1 (149 aa) initn: 760 init1: 760 opt: 760 Z-score: 923.0 bits: 177.4 E(32554): 4.3e-45 Smith-Waterman score: 760; 100.0% identity (100.0% similar) in 109 aa overlap (1-109:1-109) 10 20 30 40 50 60 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS72 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEENNPKGRSSKY 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB8 LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTI CCDS72 GLLHCGNTEKDGKSPLTAHDARHTKAICL 130 140 >>CCDS60325.1 SLAMF7 gene_id:57823|Hs108|chr1 (188 aa) initn: 760 init1: 760 opt: 760 Z-score: 921.6 bits: 177.5 E(32554): 5.1e-45 Smith-Waterman score: 1205; 82.5% identity (82.5% similar) in 228 aa overlap (1-228:1-188) 10 20 30 40 50 60 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCE----------- 70 80 90 100 130 140 150 160 170 180 pF1KB8 LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDTI ::::::::::::::::::::::::::::::: CCDS60 -----------------------------EYIEEKKRVDICRETPNICPHSGENTEYDTI 110 120 130 140 190 200 210 220 pF1KB8 PHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI :::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 PHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI 150 160 170 180 >>CCDS60322.1 SLAMF7 gene_id:57823|Hs108|chr1 (204 aa) initn: 644 init1: 535 opt: 535 Z-score: 650.7 bits: 127.5 E(32554): 6.3e-30 Smith-Waterman score: 598; 49.8% identity (65.9% similar) in 229 aa overlap (1-228:1-204) 10 20 30 40 50 60 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGEEDVIYTWKAL :::::::::::::::::: .. : : .. .:. . : ... .....:... CCDS60 MAGSPTCLTLIYILWQLTGSAASGPVKE-LVGSVGGAVTFPLKSKVKQ-VDSIVWTFNTT 10 20 30 40 50 70 80 90 100 110 120 pF1KB8 GQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEGAADDPDSSMV .. . ..:.:. . :: .: . . :: . .: .: CCDS60 PLVTIQPEGGTII-------------VTQNRNRERVDFPDGGYSLKLSKLKKNDSGIYYV 60 70 80 90 100 130 140 150 160 170 pF1KB8 -LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPNICPHSGENTEYDT . : . .:: .. :::::::::::::::::::::::::::::: CCDS60 GIYSSSLQQPSTQEYVLHVY----------EYIEEKKRVDICRETPNICPHSGENTEYDT 110 120 130 140 150 180 190 200 210 220 pF1KB8 IPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI ::::::::::::::::::::::::::::::::::::::::::::::::: CCDS60 IPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYENVI 160 170 180 190 200 >>CCDS81388.1 CD84 gene_id:8832|Hs108|chr1 (339 aa) initn: 294 init1: 151 opt: 323 Z-score: 392.9 bits: 80.5 E(32554): 1.5e-15 Smith-Waterman score: 323; 33.6% identity (59.1% similar) in 235 aa overlap (5-228:117-339) 10 20 30 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNK : : : : :. ..:.:::.:..:... CCDS81 ALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNL-QIYRRLGKPKITQSLMASV 90 100 110 120 130 140 40 50 60 70 80 90 pF1KB8 NGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPV :.:: ..::: .:. :..: :.:. ::. .:..: : ....:. :.:.::: CCDS81 NSTCNVTLTCSVEKEEKNVTYNWSPLGE------EGNVLQIFQTPEDQELTYTCTAQNPV 150 160 170 180 190 100 110 120 130 140 pF1KB8 SRNFSSPILARKLCEGAADDPDSSMV-LLCLLLVPLLLSLFVLGLFLWFLKRERQ----- : : :. : ::.:: : . . :: .: . .:: :.. ..::. : ..:: CCDS81 SNN-SDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVLILSSVFLFRLFKRRQGSCLN 200 210 220 230 240 250 150 160 170 180 190 200 pF1KB8 ----EEYIEEKKRV-DICRETPNICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIP . : :: . . : : .:. :: : ... ::.:.::::: :.. CCDS81 TFTKNPYAASKKTIYTYIMASRNTQP--AESRIYDEILQSKVLPSKEEPVNTVYSEVQFA 260 270 280 290 300 310 210 220 pF1KB8 KKMENPHSLLTMPDTPRLFAYENVI :: . . . : : .:: :: CCDS81 DKMGKASTQDSKP--PGTSSYEIVI 320 330 >>CCDS53396.1 CD84 gene_id:8832|Hs108|chr1 (345 aa) initn: 294 init1: 151 opt: 318 Z-score: 386.8 bits: 79.4 E(32554): 3.2e-15 Smith-Waterman score: 318; 32.2% identity (60.3% similar) in 239 aa overlap (5-228:117-345) 10 20 30 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNK : : : : :. ..:.:::.:..:... CCDS53 ALGPNYNLVISDLRMEDAGDYKADINTQADPYTTTKRYNL-QIYRRLGKPKITQSLMASV 90 100 110 120 130 140 40 50 60 70 80 90 pF1KB8 NGTCVTNLTCCMEHGEEDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPV :.:: ..::: .:. :..: :.:. ::. .:..: : ....:. :.:.::: CCDS53 NSTCNVTLTCSVEKEEKNVTYNWSPLGE------EGNVLQIFQTPEDQELTYTCTAQNPV 150 160 170 180 190 100 110 120 130 140 150 pF1KB8 SRNFSSPILARKLCEGAADDPDSSMV-LLCLLLVPLLLSLFVLGLFLWFLKRERQEEYIE : : :. : ::.:: : . . :: .: . .:: :.. ..::. : ..:: . . CCDS53 SNN-SDSISARQLCADIAMGFRTHHTGLLSVLAMFFLLVLILSSVFLFRLFKRRQGRIFP 200 210 220 230 240 250 160 170 180 190 pF1KB8 EKKRVDICRETPNICPH--------SGENTE------YDTIPHTNRTILKEDPANTVYST : . .. ..: . ...::. :: : ... ::.:.::::: CCDS53 EGSCLNTFTKNPYAASKKTIYTYIMASRNTQPAESRIYDEILQSKVLPSKEEPVNTVYSE 260 270 280 290 300 310 200 210 220 pF1KB8 VEIPKKMENPHSLLTMPDTPRLFAYENVI :.. :: . . . : : .:: :: CCDS53 VQFADKMGKASTQDSKP--PGTSSYEIVI 320 330 340 >>CCDS1191.1 SLAMF9 gene_id:89886|Hs108|chr1 (289 aa) initn: 159 init1: 106 opt: 270 Z-score: 330.2 bits: 68.7 E(32554): 4.5e-12 Smith-Waterman score: 270; 31.4% identity (66.4% similar) in 140 aa overlap (21-156:133-270) 10 20 30 40 50 pF1KB8 MAGSPTCLTLIYILWQLTEHLSKPKVTMGLQSNKNGTCVTNLTCCMEHGE ::.:..:....:. .:.: .:.: .:.. CCDS11 EDSGLYQAQVNLRTSQISTMQQYNICVYRWLSEPQITVNFESSGEGACSMSLVCSVEKAG 110 120 130 140 150 160 60 70 80 90 100 110 pF1KB8 EDVIYTWKALGQAANESHNGSILPISWRWGESDMTFICVARNPVSRNFSSPILARKLCEG :. :.: . :... :.: .: ::: :.: ... : : ::.: : :: . CCDS11 MDMTYSWLSRGDSTYTFHEGPVLSTSWRPGDSALSYTCRANNPISNVSSCPIPDGPFYAD 170 180 190 200 210 220 120 130 140 150 160 pF1KB8 ---AADDPDSSMVLLCL-LLVPLLLSLFVLGLFLWFLKRERQEEYIEEKKRVDICRETPN :.. :.... :: ::. ::: ....: :: .. ...... . :: CCDS11 PNYASEKPSTAFCLLAKGLLIFLLLVILAMG--LWVIRVQKRHKMPRMKKLMRNRMKLRK 230 240 250 260 270 280 170 180 190 200 210 220 pF1KB8 ICPHSGENTEYDTIPHTNRTILKEDPANTVYSTVEIPKKMENPHSLLTMPDTPRLFAYEN CCDS11 EAKPGSSPA 228 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 03:37:55 2016 done: Mon Nov 7 03:37:55 2016 Total Scan time: 1.770 Total Display time: 0.010 Function used was FASTA [36.3.4 Apr, 2011]