FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7519, 142 aa
  1>>>pF1KB7519 142 - 142 aa - 142 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.2165+/-0.000657; mu= 12.3589+/- 0.040
 mean_var=66.9320+/-13.403, 0's: 0 Z-trim(110.1): 11  B-trim: 83 in 1/49
 Lambda= 0.156768
 statistics sampled from 11326 (11331) to 11326 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.735), E-opt: 0.2 (0.348), width:  16
 Scan time:  1.840

The best scores are:                                      opt bits E(32554)
CCDS2151.1 POLR2D gene_id:5433|Hs108|chr2          ( 142)  904 212.5 7.2e-56


>>CCDS2151.1 POLR2D gene_id:5433|Hs108|chr2               (142 aa)
 initn: 904 init1: 904 opt: 904  Z-score: 1116.5  bits: 212.5 E(32554): 7.2e-56
Smith-Waterman score: 904; 100.0% identity (100.0% similar) in 142 aa overlap (1-142:1-142)

               10        20        30        40        50        60
pF1KB7 MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 MAAGGSDPRAGDVEEDASQLIFPKEFETAETLLNSEVHMLLEHRKQQNESAEDEQELSEV
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS21 FMKTLNYTARFSRFKNRETIASVRSLLLQKKLHKFELACLANLCPETAEESKALIPSLEG
               70        80        90       100       110       120

              130       140  
pF1KB7 RFEDEELQQILDDIQTKRSFQY
       ::::::::::::::::::::::
CCDS21 RFEDEELQQILDDIQTKRSFQY
              130       140  




142 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 20:12:46 2016 done: Fri Nov  4 20:12:46 2016
 Total Scan time:  1.840 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]