(Circular) (Six-base) MAPSORT of: pFN21AE0537.seq Check: 2278 from: 1 to: 5491 pFN21AE0537 5491 bp With 182 enzymes: SgfI * October 20, 2009 10:49 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2577 3301 278 Size: 53 83 186 936 1041 724 2468 Fragments arranged by size: 2468 1041 936 724 186 83 53 AccI GT'mk_AC Cuts at: 1937 2834 1937 Size: 897 4594 Acc65I G'GTAC_C Cuts at: 2812 2812 Size: 5491 AclI AA'CG_TT Cuts at: 1563 3618 3991 1563 Size: 2055 373 3063 Fragments arranged by size: 3063 2055 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3554 4938 5206 1632 Size: 1922 1384 268 1917 Fragments arranged by size: 1922 1917 1384 268 AfeI AGC'GCT Cuts at: 2600 2600 Size: 5491 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5294 AflIII A'CryG_T Cuts at: 1203 4390 5367 1203 Size: 3187 977 1327 Fragments arranged by size: 3187 1327 977 AgeI A'CCGG_T Cuts at: 4322 4322 Size: 5491 AhdI GACnn_n'nnGTC Cuts at: 4220 4220 Size: 5491 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5491 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5491 AlwNI CAG_nnn'CTG Cuts at: 3234 4806 3234 Size: 1572 3919 ApaLI G'TGCA_C Cuts at: 3548 4704 3548 Size: 1156 4335 ApoI r'AATT_y Cuts at: 1493 2800 3026 3178 5287 1493 Size: 1307 226 152 2109 1697 Fragments arranged by size: 2109 1697 1307 226 152 AseI AT'TA_AT Cuts at: 160 1032 4045 160 Size: 872 3013 1606 Fragments arranged by size: 3013 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5491 AvaI C'yCGr_G Cuts at: 1870 1943 2550 2582 2816 1870 Size: 73 607 32 234 4545 Fragments arranged by size: 4545 607 234 73 32 BamHI G'GATC_C Cuts at: 2821 3188 2821 Size: 367 5124 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2812 4267 618 Size: 325 217 627 1025 1455 1842 Fragments arranged by size: 1842 1455 1025 627 325 217 BanII G_rGCy'C Cuts at: 1391 2810 1391 Size: 1419 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2569 928 Size: 971 670 3850 Fragments arranged by size: 3850 971 670 BbvCI CC'TCA_GC Cuts at: 2342 2540 2342 Size: 198 5293 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3682 3716 1903 Size: 34 1745 34 3678 Fragments arranged by size: 3678 1745 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3383 4593 3383 Size: 1210 4281 BclI T'GATC_A Cuts at: 1548 2328 2562 1548 Size: 780 234 4477 Fragments arranged by size: 4477 780 234 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4102 136 Size: 107 122 71 631 605 2430 1525 Fragments arranged by size: 2430 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 2688 5486 2688 Size: 2798 2693 BlpI GC'TnA_GC Cuts at: 2184 2908 2184 Size: 724 4767 Bme1580I G_kGCm'C Cuts at: 1790 3552 4708 1790 Size: 1762 1156 2573 Fragments arranged by size: 2573 1762 1156 BmgBI CAC'GTC Cuts at: 1318 2062 1318 Size: 744 4747 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 3222 4180 442 Size: 416 53 83 399 24 1805 958 1753 Fragments arranged by size: 1805 1753 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5491 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2565 2565 Size: 5491 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2465 4151 1239 Size: 1226 1686 2579 Fragments arranged by size: 2579 1686 1226 Bpu10I CC'TnA_GC Cuts at: 2342 2360 2540 2342 Size: 18 180 5293 Fragments arranged by size: 5293 180 18 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3616 4481 4779 3616 Size: 865 298 4328 Fragments arranged by size: 4328 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4154 882 Size: 617 2655 2219 Fragments arranged by size: 2655 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3282 493 Size: 711 2078 2702 Fragments arranged by size: 2702 2078 711 BsaBI GATnn'nnATC Cuts at: 5485 5485 Size: 5491 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2574 3298 3680 4315 Size: 53 83 186 936 1041 724 382 635 Cuts at: 4315 275 Size: 1451 Fragments arranged by size: 1451 1041 936 724 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2397 3924 4322 4596 4743 5154 2397 Size: 1527 398 274 147 411 2734 Fragments arranged by size: 2734 1527 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5266 Fragments arranged by size: 5266 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2324 2462 2568 2721 1186 Size: 1138 138 106 153 3956 Fragments arranged by size: 3956 1138 153 138 106 BseYI C'CCAG_C Cuts at: 2191 2589 4694 5190 2191 Size: 398 2105 496 2492 Fragments arranged by size: 2492 2105 496 398 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2162 2273 2422 2765 1163 Size: 573 426 111 149 343 3889 Fragments arranged by size: 3889 573 426 343 149 111 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2431 2941 3702 4730 1540 Size: 275 186 430 510 761 1028 2301 Fragments arranged by size: 2301 1028 761 510 430 275 186 BsiHKAI G_wGCw'C Cuts at: 3552 3637 4708 3552 Size: 85 1071 4335 Fragments arranged by size: 4335 1071 85 BsmI GAATG_Cn' Cuts at: 3002 3095 3002 Size: 93 5398 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2810 3552 3637 4708 1391 Size: 399 1020 742 85 1071 2174 Fragments arranged by size: 2174 1071 1020 742 399 85 BspEI T'CCGG_A Cuts at: 2397 5154 2397 Size: 2757 2734 BspHI T'CATG_A Cuts at: 2782 3380 5110 2782 Size: 598 1730 3163 Fragments arranged by size: 3163 1730 598 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2846 844 Size: 2002 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3378 1394 Size: 429 1555 3507 Fragments arranged by size: 3507 1555 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3986 4160 65 Size: 1183 2738 174 1396 Fragments arranged by size: 2738 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2080 4135 4322 1700 Size: 110 270 2055 187 2869 Fragments arranged by size: 2869 2055 270 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5491 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5491 BssSI C'ACGA_G Cuts at: 3551 4563 3551 Size: 1012 4479 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5491 BstBI TT'CG_AA Cuts at: 4295 4295 Size: 5491 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5491 BstXI CCAn_nnnn'nTGG Cuts at: 2651 2651 Size: 5491 BstYI r'GATC_y Cuts at: 1972 2487 2688 2821 3188 3573 3590 5042 5128 Size: 515 201 133 367 385 17 1452 86 Cuts at: 5128 5140 5486 1972 Size: 12 346 1977 Fragments arranged by size: 1977 1452 515 385 367 346 201 133 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2103 2733 2103 Size: 630 4861 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 4000 Fragments arranged by size: 4000 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2764 487 Size: 683 56 1538 3214 Fragments arranged by size: 3214 1538 683 56 BtsI GCAGTG_nn' Cuts at: 3007 3801 3821 3007 Size: 794 20 4677 Fragments arranged by size: 4677 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5491 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2359 2394 529 Size: 35 1795 35 3626 Fragments arranged by size: 3626 1795 35 35 DraI TTT'AAA Cuts at: 2795 2795 Size: 5491 DraIII CAC_nnn'GTG Cuts at: 2722 2722 Size: 5491 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4498 809 Size: 507 3182 1802 Fragments arranged by size: 3182 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2109 2428 2713 Size: 54 1425 50 275 18 279 319 285 Cuts at: 2713 2938 3827 5456 8 Size: 225 889 1629 43 Fragments arranged by size: 1629 1425 889 319 285 279 275 225 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2428 2938 1537 Size: 275 616 510 4090 Fragments arranged by size: 4090 616 510 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3421 1353 Size: 2068 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4078 4452 4598 387 Size: 1064 138 2489 374 146 1280 Fragments arranged by size: 2489 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2465 3554 4151 4938 5206 1239 Size: 393 833 1089 597 787 268 1524 Fragments arranged by size: 1524 1089 833 787 597 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2306 2621 2306 Size: 315 5176 EcoO109I rG'GnC_Cy Cuts at: 2070 2070 Size: 5491 EcoRI G'AATT_C Cuts at: 2800 3178 2800 Size: 378 5113 FspI TGC'GCA Cuts at: 3997 3997 Size: 5491 HaeII r_GCGC'y Cuts at: 1678 2602 4638 1678 Size: 924 2036 2531 Fragments arranged by size: 2531 2036 924 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2130 2162 2259 2291 2547 Size: 32 135 32 558 32 97 32 256 Cuts at: 2547 2579 4132 4164 4206 4238 1373 Size: 32 1553 32 42 32 2626 Fragments arranged by size: 2626 1553 558 256 135 97 42 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2835 3081 669 Size: 988 281 897 246 3079 Fragments arranged by size: 3079 988 897 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5491 HpaI GTT'AAC Cuts at: 3081 3081 Size: 5491 KpnI G_GTAC'C Cuts at: 2816 2816 Size: 5491 MfeI C'AATT_G Cuts at: 3090 3090 Size: 5491 MluI A'CGCG_T Cuts at: 5367 5367 Size: 5491 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4605 4789 1305 Size: 3300 184 2007 Fragments arranged by size: 3300 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2715 10 Size: 54 1425 343 883 2786 Fragments arranged by size: 2786 1425 883 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3449 3808 3967 518 Size: 648 2283 359 159 2042 Fragments arranged by size: 2283 2042 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2191 2907 3584 4732 4977 1606 Size: 585 716 677 1148 245 2120 Fragments arranged by size: 2120 1148 716 677 585 245 NaeI GCC'GGC Cuts at: 2082 2082 Size: 5491 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4000 Fragments arranged by size: 4000 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5491 NgoMIV G'CCGG_C Cuts at: 2080 2080 Size: 5491 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5491 NotI GC'GGCC_GC Cuts at: 2938 2938 Size: 5491 NspI r_CATG'y Cuts at: 1132 1229 2410 2849 4394 1132 Size: 97 1181 439 1545 2229 Fragments arranged by size: 2229 1545 1181 439 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5491 PciI A'CATG_T Cuts at: 4390 4390 Size: 5491 PflMI CCAn_nnn'nTGG Cuts at: 1108 2722 1108 Size: 1614 3877 PfoI T'CCnGG_A Cuts at: 2490 2490 Size: 5491 PmeI GTTT'AAAC Cuts at: 2795 2795 Size: 5491 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3560 3592 5073 5105 3560 Size: 32 1481 32 3946 Fragments arranged by size: 3946 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2070 2070 Size: 5491 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5491 PsiI TTA'TAA Cuts at: 3061 3061 Size: 5491 PstI C_TGCA'G Cuts at: 830 2124 2322 2843 830 Size: 1294 198 521 3478 Fragments arranged by size: 3478 1294 521 198 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5491 PvuII CAG'CTG Cuts at: 2191 2191 Size: 5491 SalI G'TCGA_C Cuts at: 1936 2833 1936 Size: 897 4594 SanDI GG'GwC_CC Cuts at: 2070 2070 Size: 5491 SbfI CC_TGCA'GG Cuts at: 2843 2843 Size: 5491 ScaI AGT'ACT Cuts at: 3739 5451 3739 Size: 1712 3779 SfcI C'TryA_G Cuts at: 826 1045 2120 2318 2839 3974 4655 4846 826 Size: 219 1075 198 521 1135 681 191 1471 Fragments arranged by size: 1471 1135 1075 681 521 219 198 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5491 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5491 SmaI CCC'GGG Cuts at: 1872 2818 1872 Size: 946 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2550 3595 4496 4758 820 Size: 197 926 607 1045 901 262 1553 Fragments arranged by size: 1553 1045 926 901 607 262 197 SnaBI TAC'GTA Cuts at: 493 3282 493 Size: 2789 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5491 SphI G_CATG'C Cuts at: 1132 2410 2849 1132 Size: 1278 439 3774 Fragments arranged by size: 3774 1278 439 SspI AAT'ATT Cuts at: 5 52 3415 5 Size: 47 3363 2081 Fragments arranged by size: 3363 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5491 StyI C'CwwG_G Cuts at: 513 1065 2004 2930 513 Size: 552 939 926 3074 Fragments arranged by size: 3074 939 926 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2183 3518 3535 3688 3873 4318 325 Size: 1255 603 1335 17 153 185 445 1498 Fragments arranged by size: 1498 1335 1255 603 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3737 5449 96 Size: 274 80 33 51 1443 1760 1712 138 Fragments arranged by size: 1760 1712 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5451 5483 5451 Size: 32 5459 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5491 XbaI T'CTAG_A Cuts at: 2827 2827 Size: 5491 XhoI C'TCGA_G Cuts at: 1943 2550 1943 Size: 607 4884 XmaI C'CCGG_G Cuts at: 1870 2816 1870 Size: 946 4545 XmnI GAAnn'nnTTC Cuts at: 3620 3620 Size: 5491 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2575 3299 276 Size: 53 83 186 936 1041 724 2468 Fragments arranged by size: 2468 1041 936 724 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BfrBI BsiWI BsmBI BstZ17I EcoICRI EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PmlI PspOMI PspXI PsrI RsrII SacI SacII SapI SexAI SfiI SfoI SrfI SwaI XcmI