(Circular) (Six-base) MAPSORT of: pFN21AB6788.seq Check: 7692 from: 1 to: 5167 pFN21AB6788 5167 bp With 182 enzymes: SgfI * October 20, 2009 10:43 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2068 2068 Size: 5167 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2977 278 Size: 53 83 186 936 1441 2468 Fragments arranged by size: 2468 1441 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2510 1937 Size: 573 4594 Acc65I G'GTAC_C Cuts at: 2488 2488 Size: 5167 AclI AA'CG_TT Cuts at: 1563 3294 3667 1563 Size: 1731 373 3063 Fragments arranged by size: 3063 1731 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2207 2312 3230 4614 4882 1632 Size: 575 105 918 1384 268 1917 Fragments arranged by size: 1917 1384 918 575 268 105 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4970 AflIII A'CryG_T Cuts at: 1203 4066 5043 1203 Size: 2863 977 1327 Fragments arranged by size: 2863 1327 977 AgeI A'CCGG_T Cuts at: 3998 3998 Size: 5167 AhdI GACnn_n'nnGTC Cuts at: 3896 3896 Size: 5167 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5167 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2100 1184 Size: 916 4251 AlwNI CAG_nnn'CTG Cuts at: 2910 4482 2910 Size: 1572 3595 ApaLI G'TGCA_C Cuts at: 3224 4380 3224 Size: 1156 4011 ApoI r'AATT_y Cuts at: 1493 2354 2476 2702 2854 4963 1493 Size: 861 122 226 152 2109 1697 Fragments arranged by size: 2109 1697 861 226 152 122 AseI AT'TA_AT Cuts at: 160 1032 3721 160 Size: 872 2689 1606 Fragments arranged by size: 2689 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5167 AvaI C'yCGr_G Cuts at: 1870 1943 2492 1870 Size: 73 549 4545 Fragments arranged by size: 4545 549 73 BamHI G'GATC_C Cuts at: 2497 2864 2497 Size: 367 4800 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2488 3943 618 Size: 325 217 627 701 1455 1842 Fragments arranged by size: 1842 1455 701 627 325 217 BanII G_rGCy'C Cuts at: 1391 2486 1391 Size: 1095 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4196 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2357 2391 3358 3392 1903 Size: 34 420 34 967 34 3678 Fragments arranged by size: 3678 967 420 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3059 4269 3059 Size: 1210 3957 BclI T'GATC_A Cuts at: 1548 1548 Size: 5167 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3778 136 Size: 107 122 71 631 605 2106 1525 Fragments arranged by size: 2106 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5162 5162 Size: 5167 BlpI GC'TnA_GC Cuts at: 2446 2584 2446 Size: 138 5029 Bme1580I G_kGCm'C Cuts at: 1790 3228 4384 1790 Size: 1438 1156 2573 Fragments arranged by size: 2573 1438 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5167 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2898 3856 442 Size: 416 53 83 399 24 1481 958 1753 Fragments arranged by size: 1753 1481 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5167 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2472 3827 1239 Size: 1233 1355 2579 Fragments arranged by size: 2579 1355 1233 Bpu10I CC'TnA_GC Cuts at: 2436 2436 Size: 5167 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3292 4157 4455 3292 Size: 865 298 4004 Fragments arranged by size: 4004 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2467 3830 882 Size: 617 968 1363 2219 Fragments arranged by size: 2219 1363 968 617 BsaAI yAC'GTr Cuts at: 493 1204 2958 493 Size: 711 1754 2702 Fragments arranged by size: 2702 1754 711 BsaBI GATnn'nnATC Cuts at: 5161 5161 Size: 5167 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2974 3356 3991 275 Size: 53 83 186 936 1441 382 635 1451 Fragments arranged by size: 1451 1441 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3600 3998 4272 4419 4830 3600 Size: 398 274 147 411 3937 Fragments arranged by size: 3937 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2138 2168 2223 2253 2445 Size: 30 165 30 735 30 55 30 192 Cuts at: 2445 2475 1178 Size: 30 3870 Fragments arranged by size: 3870 735 192 165 55 30 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2244 1186 Size: 1058 4109 BseYI C'CCAG_C Cuts at: 2429 4370 4866 2429 Size: 1941 496 2730 Fragments arranged by size: 2730 1941 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4594 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2023 2617 3378 4406 1540 Size: 275 186 22 594 761 1028 2301 Fragments arranged by size: 2301 1028 761 594 275 186 22 BsiHKAI G_wGCw'C Cuts at: 2166 3228 3313 4384 2166 Size: 1062 85 1071 2949 Fragments arranged by size: 2949 1071 1062 85 BsmI GAATG_Cn' Cuts at: 2678 2771 2678 Size: 93 5074 BsmBI CGTCTCn'nnnn_ Cuts at: 2384 2384 Size: 5167 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2166 2486 3228 3313 4384 1391 Size: 399 376 320 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 376 320 85 BspEI T'CCGG_A Cuts at: 4830 4830 Size: 5167 BspHI T'CATG_A Cuts at: 3056 4786 3056 Size: 1730 3437 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2068 2522 844 Size: 1224 454 3489 Fragments arranged by size: 3489 1224 454 BsrBI CCG'CTC Cuts at: 1394 1823 2046 3054 1394 Size: 429 223 1008 3507 Fragments arranged by size: 3507 1008 429 223 BsrDI GCAATG_nn' Cuts at: 65 1248 3662 3836 65 Size: 1183 2414 174 1396 Fragments arranged by size: 2414 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2027 3811 3998 1700 Size: 110 217 1784 187 2869 Fragments arranged by size: 2869 1784 217 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5167 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5167 BssSI C'ACGA_G Cuts at: 3227 4239 3227 Size: 1012 4155 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5167 BstBI TT'CG_AA Cuts at: 3971 3971 Size: 5167 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5167 BstYI r'GATC_y Cuts at: 1972 2497 2864 3249 3266 4718 4804 4816 5162 Size: 525 367 385 17 1452 86 12 346 Cuts at: 5162 1972 Size: 1977 Fragments arranged by size: 1977 1452 525 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3676 Fragments arranged by size: 3676 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4428 Fragments arranged by size: 4428 683 56 BtsI GCAGTG_nn' Cuts at: 2683 3477 3497 2683 Size: 794 20 4353 Fragments arranged by size: 4353 794 20 ClaI AT'CG_AT Cuts at: 1554 2178 1554 Size: 624 4543 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5132 DraI TTT'AAA Cuts at: 2471 2471 Size: 5167 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4174 809 Size: 507 2858 1802 Fragments arranged by size: 2858 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2614 3503 5132 Size: 54 1425 50 275 18 784 889 1629 Cuts at: 5132 8 Size: 43 Fragments arranged by size: 1629 1425 889 784 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2614 1537 Size: 275 802 4090 Fragments arranged by size: 4090 802 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3097 1353 Size: 1744 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2024 3754 4128 4274 387 Size: 1064 138 435 1730 374 146 1280 Fragments arranged by size: 1730 1280 1064 435 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2207 2312 2472 3230 3827 4614 4882 Size: 393 575 105 160 758 597 787 268 Cuts at: 4882 1239 Size: 1524 Fragments arranged by size: 1524 787 758 597 575 393 268 160 105 EcoNI CCTnn'n_nnAGG Cuts at: 2105 2105 Size: 5167 EcoRI G'AATT_C Cuts at: 2354 2476 2854 2354 Size: 122 378 4667 Fragments arranged by size: 4667 378 122 FspI TGC'GCA Cuts at: 3673 3673 Size: 5167 HaeII r_GCGC'y Cuts at: 1678 4314 1678 Size: 2636 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2445 2477 3808 3840 3882 Size: 32 135 32 873 32 1331 32 42 Cuts at: 3882 3914 1373 Size: 32 2626 Fragments arranged by size: 2626 1331 873 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2511 2757 669 Size: 988 281 573 246 3079 Fragments arranged by size: 3079 988 573 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5167 HpaI GTT'AAC Cuts at: 2757 2757 Size: 5167 KpnI G_GTAC'C Cuts at: 2492 2492 Size: 5167 MfeI C'AATT_G Cuts at: 2766 2766 Size: 5167 MluI A'CGCG_T Cuts at: 5043 5043 Size: 5167 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2124 2206 4281 4465 1305 Size: 819 82 2075 184 2007 Fragments arranged by size: 2075 2007 819 184 82 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3345 Fragments arranged by size: 3345 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3125 3484 3643 518 Size: 648 1959 359 159 2042 Fragments arranged by size: 2042 1959 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2019 2040 2138 2450 2583 3260 4408 4653 Size: 413 21 98 312 133 677 1148 245 Cuts at: 4653 1606 Size: 2120 Fragments arranged by size: 2120 1148 677 413 312 245 133 98 21 NaeI GCC'GGC Cuts at: 2029 2029 Size: 5167 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3676 Fragments arranged by size: 3676 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5167 NgoMIV G'CCGG_C Cuts at: 2027 2027 Size: 5167 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5167 NotI GC'GGCC_GC Cuts at: 2614 2614 Size: 5167 NspI r_CATG'y Cuts at: 1132 1229 2525 4070 1132 Size: 97 1296 1545 2229 Fragments arranged by size: 2229 1545 1296 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5167 PciI A'CATG_T Cuts at: 4066 4066 Size: 5167 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5167 PfoI T'CCnGG_A Cuts at: 2358 2358 Size: 5167 PmeI GTTT'AAAC Cuts at: 2471 2471 Size: 5167 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3236 3268 4749 4781 3236 Size: 32 1481 32 3622 Fragments arranged by size: 3622 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5167 PsiI TTA'TAA Cuts at: 2737 2737 Size: 5167 PstI C_TGCA'G Cuts at: 830 2519 830 Size: 1689 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5167 PvuII CAG'CTG Cuts at: 2138 2450 2138 Size: 312 4855 SalI G'TCGA_C Cuts at: 1936 2509 1936 Size: 573 4594 SbfI CC_TGCA'GG Cuts at: 2519 2519 Size: 5167 ScaI AGT'ACT Cuts at: 3415 5127 3415 Size: 1712 3455 SfcI C'TryA_G Cuts at: 826 1045 2515 3650 4331 4522 826 Size: 219 1470 1135 681 191 1471 Fragments arranged by size: 1471 1470 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5167 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5167 SmaI CCC'GGG Cuts at: 1872 2494 1872 Size: 622 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3271 4172 4434 820 Size: 197 926 1328 901 262 1553 Fragments arranged by size: 1553 1328 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 2958 493 Size: 2465 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5167 SphI G_CATG'C Cuts at: 1132 2525 1132 Size: 1393 3774 SspI AAT'ATT Cuts at: 5 52 3091 5 Size: 47 3039 2081 Fragments arranged by size: 3039 2081 47 StuI AGG'CCT Cuts at: 1517 2121 1517 Size: 604 4563 StyI C'CwwG_G Cuts at: 513 1065 2004 2409 2606 513 Size: 552 939 405 197 3074 Fragments arranged by size: 3074 939 552 405 197 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3194 3211 3364 3549 3994 325 Size: 1255 1614 17 153 185 445 1498 Fragments arranged by size: 1614 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3413 5125 96 Size: 274 80 33 51 1443 1436 1712 138 Fragments arranged by size: 1712 1443 1436 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2223 2255 5127 5159 2223 Size: 32 2872 32 2231 Fragments arranged by size: 2872 2231 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5167 XbaI T'CTAG_A Cuts at: 2503 2503 Size: 5167 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5167 XmaI C'CCGG_G Cuts at: 1870 2492 1870 Size: 622 4545 XmnI GAAnn'nnTTC Cuts at: 3296 3296 Size: 5167 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2975 276 Size: 53 83 186 936 1441 2468 Fragments arranged by size: 2468 1441 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoO109I EcoRV FalI FseI FspAI KasI NarI NruI NsiI PacI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI