Restriction map for
pFN21AE0185
(Circular) (Six-base) MAPSORT of: pFN21AE0185.seq Check: 3583 from: 1 to: 5473
pFN21AE0185 5473 bp
With 182 enzymes: SgfI *
October 20, 2009 10:45 ..
AatII G_ACGT'C
Cuts at: 278 331 414 600 1536 3283 278
Size: 53 83 186 936 1747 2468
Fragments arranged by size:
2468 1747 936 186 83 53
AccI GT'mk_AC
Cuts at: 1937 2816 1937
Size: 879 4594
Acc65I G'GTAC_C
Cuts at: 2794 2794
Size: 5473
AclI AA'CG_TT
Cuts at: 1563 3600 3973 1563
Size: 2037 373 3063
Fragments arranged by size:
3063 2037 373
AcuI CTGAAGnnnnnnnnnnnnnn_nn'
Cuts at: 1632 3536 4920 5188 1632
Size: 1904 1384 268 1917
Fragments arranged by size:
1917 1904 1384 268
AflII C'TTAA_G
Cuts at: 820 1017 820
Size: 197 5276
AflIII A'CryG_T
Cuts at: 1203 2510 2512 4372 5349 1203
Size: 1307 2 1860 977 1327
Fragments arranged by size:
1860 1327 1307 977 2
AgeI A'CCGG_T
Cuts at: 4304 4304
Size: 5473
AhdI GACnn_n'nnGTC
Cuts at: 4202 4202
Size: 5473
AleI CACnn'nnGTG
Cuts at: 1166 2406 1166
Size: 1240 4233
AlfI GCAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1184 1184
Size: 5473
AlwNI CAG_nnn'CTG
Cuts at: 3216 4788 3216
Size: 1572 3901
ApaLI G'TGCA_C
Cuts at: 3530 4686 3530
Size: 1156 4317
ApoI r'AATT_y
Cuts at: 1493 2291 2492 2537 2627 2782 3008 3160 5269
Size: 798 201 45 90 155 226 152 2109
Cuts at: 5269 1493
Size: 1697
Fragments arranged by size:
2109 1697 798 226 201 155 152 90
45
AseI AT'TA_AT
Cuts at: 160 1032 4027 160
Size: 872 2995 1606
Fragments arranged by size:
2995 1606 872
AsiSI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5473
AvaI C'yCGr_G
Cuts at: 1870 1943 2798 1870
Size: 73 855 4545
Fragments arranged by size:
4545 855 73
BaeI ACnnnnGTAyCnnnnnnn_nnnnn'
Cuts at: 2732 2765 2732
Size: 33 5440
BamHI G'GATC_C
Cuts at: 2803 3170 2803
Size: 367 5106
BanI G'GyrC_C
Cuts at: 618 943 1160 1787 2794 4249 618
Size: 325 217 627 1007 1455 1842
Fragments arranged by size:
1842 1455 1007 627 325 217
BanII G_rGCy'C
Cuts at: 1391 2792 1391
Size: 1401 4072
BbsI GAAGACnn'nnnn_
Cuts at: 928 1899 928
Size: 971 4502
BcgI CGAnnnnnnTGCnnnnnnnnnn_nn'
Cuts at: 1903 1937 3664 3698 1903
Size: 34 1727 34 3678
Fragments arranged by size:
3678 1727 34 34
BciVI GTATCCnnnnn_n'
Cuts at: 3365 4575 3365
Size: 1210 4263
BclI T'GATC_A
Cuts at: 1548 2079 1548
Size: 531 4942
BglI GCCn_nnn'nGGC
Cuts at: 136 243 365 436 1067 1672 4084 136
Size: 107 122 71 631 605 2412 1525
Fragments arranged by size:
2412 1525 631 605 122 107 71
BglII A'GATC_T
Cuts at: 5468 5468
Size: 5473
BlpI GC'TnA_GC
Cuts at: 2686 2890 2686
Size: 204 5269
Bme1580I G_kGCm'C
Cuts at: 1790 3534 4690 1790
Size: 1744 1156 2573
Fragments arranged by size:
2573 1744 1156
BmgBI CAC'GTC
Cuts at: 1318 1318
Size: 5473
BmrI ACTGGGnnnn_n'
Cuts at: 442 858 911 994 1393 1417 3204 4162 442
Size: 416 53 83 399 24 1787 958 1753
Fragments arranged by size:
1787 1753 958 416 399 83 53 24
BmtI G_CTAG'C
Cuts at: 1056 1056
Size: 5473
BpmI CTGGAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 4133 1239
Size: 2894 2579
BpuEI CTTGAGnnnnnnnnnnnnnn_nn'
Cuts at: 2297 2298 3598 4463 4761 2297
Size: 1 1300 865 298 3009
Fragments arranged by size:
3009 1300 865 298 1
BsaI GGTCTCn'nnnn_
Cuts at: 882 1499 4136 882
Size: 617 2637 2219
Fragments arranged by size:
2637 2219 617
BsaAI yAC'GTr
Cuts at: 493 1204 2513 3264 493
Size: 711 1309 751 2702
Fragments arranged by size:
2702 1309 751 711
BsaBI GATnn'nnATC
Cuts at: 2040 5467 2040
Size: 3427 2046
BsaHI Gr'CG_yC
Cuts at: 275 328 411 597 1533 3280 3662 4297 275
Size: 53 83 186 936 1747 382 635 1451
Fragments arranged by size:
1747 1451 936 635 382 186 83 53
BsaWI w'CCGG_w
Cuts at: 3906 4304 4578 4725 5136 3906
Size: 398 274 147 411 4243
Fragments arranged by size:
4243 411 398 274 147
BsaXI ACnnnnnCTCCnnnnnnn_nnn'
Cuts at: 1178 1208 1373 1403 1178
Size: 30 165 30 5248
Fragments arranged by size:
5248 165 30 30
BseRI GAGGAGnnnnnnnn_nn'
Cuts at: 1186 1186
Size: 5473
BseYI C'CCAG_C
Cuts at: 4676 5172 4676
Size: 496 4977
BsgI GTGCAGnnnnnnnnnnnnnn_nn'
Cuts at: 1163 1736 1163
Size: 573 4900
BsiEI CG_ry'CG
Cuts at: 1540 1815 2001 2923 3684 4712 1540
Size: 275 186 922 761 1028 2301
Fragments arranged by size:
2301 1028 922 761 275 186
BsiHKAI G_wGCw'C
Cuts at: 3534 3619 4690 3534
Size: 85 1071 4317
Fragments arranged by size:
4317 1071 85
BsmI GAATG_Cn'
Cuts at: 2108 2984 3077 2108
Size: 876 93 4504
Fragments arranged by size:
4504 876 93
Bsp1286I G_dGCh'C
Cuts at: 1391 1790 2792 3534 3619 4690 1391
Size: 399 1002 742 85 1071 2174
Fragments arranged by size:
2174 1071 1002 742 399 85
BspEI T'CCGG_A
Cuts at: 5136 5136
Size: 5473
BspHI T'CATG_A
Cuts at: 2185 3362 5092 2185
Size: 1177 1730 2566
Fragments arranged by size:
2566 1730 1177
BspMI ACCTGCnnnn'nnnn_
Cuts at: 844 2063 2828 844
Size: 1219 765 3489
Fragments arranged by size:
3489 1219 765
BsrBI CCG'CTC
Cuts at: 1394 1823 3360 1394
Size: 429 1537 3507
Fragments arranged by size:
3507 1537 429
BsrDI GCAATG_nn'
Cuts at: 65 1248 2161 2599 3968 4142 65
Size: 1183 913 438 1369 174 1396
Fragments arranged by size:
1396 1369 1183 913 438 174
BsrFI r'CCGG_y
Cuts at: 1700 1810 4117 4304 1700
Size: 110 2307 187 2869
Fragments arranged by size:
2869 2307 187 110
BsrGI T'GTAC_A
Cuts at: 96 96
Size: 5473
BssHII G'CGCG_C
Cuts at: 1925 1925
Size: 5473
BssSI C'ACGA_G
Cuts at: 3533 4545 3533
Size: 1012 4461
BstAPI GCAn_nnn'nTGC
Cuts at: 794 2160 794
Size: 1366 4107
BstBI TT'CG_AA
Cuts at: 4277 4277
Size: 5473
BstEII G'GTnAC_C
Cuts at: 1184 1184
Size: 5473
BstYI r'GATC_y
Cuts at: 1972 2803 3170 3555 3572 5024 5110 5122 5468
Size: 831 367 385 17 1452 86 12 346
Cuts at: 5468 1972
Size: 1977
Fragments arranged by size:
1977 1452 831 385 367 346 86 17
12
BtgI C'CryG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3982
Fragments arranged by size:
3982 939 552
BtgZI GCGATGnnnnnnnnnn'nnnn_
Cuts at: 487 1170 1226 487
Size: 683 56 4734
Fragments arranged by size:
4734 683 56
BtsI GCAGTG_nn'
Cuts at: 2989 3783 3803 2989
Size: 794 20 4659
Fragments arranged by size:
4659 794 20
ClaI AT'CG_AT
Cuts at: 1554 1554
Size: 5473
CspCI CAAnnnnnGTGGnnnnnnnnnn_nn'
Cuts at: 529 564 529
Size: 35 5438
DraI TTT'AAA
Cuts at: 2550 2777 2550
Size: 227 5246
DraIII CAC_nnn'GTG
Cuts at: 2029 2029
Size: 5473
DrdI GACnn_nn'nnGTC
Cuts at: 809 1316 4480 809
Size: 507 3164 1802
Fragments arranged by size:
3164 1802 507
EaeI y'GGCC_r
Cuts at: 8 62 1487 1537 1812 1830 2920 3809 5438
Size: 54 1425 50 275 18 1090 889 1629
Cuts at: 5438 8
Size: 43
Fragments arranged by size:
1629 1425 1090 889 275 54 50 43
18
EagI C'GGCC_G
Cuts at: 1537 1812 2920 1537
Size: 275 1108 4090
Fragments arranged by size:
4090 1108 275
EarI CTCTTCn'nnn_
Cuts at: 1353 3403 1353
Size: 2050 3423
EciI GGCGGAnnnnnnnnn_nn'
Cuts at: 387 1451 1589 4060 4434 4580 387
Size: 1064 138 2471 374 146 1280
Fragments arranged by size:
2471 1280 1064 374 146 138
Eco57MI CTGrAGnnnnnnnnnnnnnn_nn'
Cuts at: 1239 1632 3536 4133 4920 5188 1239
Size: 393 1904 597 787 268 1524
Fragments arranged by size:
1904 1524 787 597 393 268
EcoRI G'AATT_C
Cuts at: 2627 2782 3160 2627
Size: 155 378 4940
Fragments arranged by size:
4940 378 155
FspI TGC'GCA
Cuts at: 3979 3979
Size: 5473
HaeII r_GCGC'y
Cuts at: 1678 4620 1678
Size: 2942 2531
Hin4I GAynnnnnvTCnnnnnnnn_nnnnn'
Cuts at: 1373 1405 1540 1572 2270 2302 4114 4146 4188
Size: 32 135 32 698 32 1812 32 42
Cuts at: 4188 4220 1373
Size: 32 2626
Fragments arranged by size:
2626 1812 698 135 42 32 32 32
32 32
HincII GTy'rAC
Cuts at: 669 1657 1938 2817 3063 669
Size: 988 281 879 246 3079
Fragments arranged by size:
3079 988 879 281 246
HindIII A'AGCT_T
Cuts at: 748 748
Size: 5473
HpaI GTT'AAC
Cuts at: 3063 3063
Size: 5473
KpnI G_GTAC'C
Cuts at: 2798 2798
Size: 5473
MfeI C'AATT_G
Cuts at: 3072 3072
Size: 5473
MluI A'CGCG_T
Cuts at: 5349 5349
Size: 5473
MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn'
Cuts at: 1305 2196 2559 4587 4771 1305
Size: 891 363 2028 184 2007
Fragments arranged by size:
2028 2007 891 363 184
MscI TGG'CCA
Cuts at: 10 64 1489 1832 10
Size: 54 1425 343 3651
Fragments arranged by size:
3651 1425 343 54
MslI CAynn'nnrTG
Cuts at: 518 1166 2406 2636 3431 3790 3949 518
Size: 648 1240 230 795 359 159 2042
Fragments arranged by size:
2042 1240 795 648 359 230 159
MspA1I CmG'CkG
Cuts at: 1606 2889 3566 4714 4959 1606
Size: 1283 677 1148 245 2120
Fragments arranged by size:
2120 1283 1148 677 245
NcoI C'CATG_G
Cuts at: 513 1065 2004 513
Size: 552 939 3982
Fragments arranged by size:
3982 939 552
NdeI CA'TA_TG
Cuts at: 387 387
Size: 5473
NheI G'CTAG_C
Cuts at: 1052 1052
Size: 5473
NotI GC'GGCC_GC
Cuts at: 2920 2920
Size: 5473
NspI r_CATG'y
Cuts at: 1132 1229 2831 4376 1132
Size: 97 1602 1545 2229
Fragments arranged by size:
2229 1602 1545 97
PasI CC'CwG_GG
Cuts at: 1348 1348
Size: 5473
PciI A'CATG_T
Cuts at: 4372 4372
Size: 5473
PflMI CCAn_nnn'nTGG
Cuts at: 1108 2171 1108
Size: 1063 4410
PmeI GTTT'AAAC
Cuts at: 2777 2777
Size: 5473
PmlI CAC'GTG
Cuts at: 2513 2513
Size: 5473
PpiI GAACnnnnnCTCnnnnnnnn_nnnnn'
Cuts at: 3542 3574 5055 5087 3542
Size: 32 1481 32 3928
Fragments arranged by size:
3928 1481 32 32
PshAI GACnn'nnGTC
Cuts at: 1613 1613
Size: 5473
PsiI TTA'TAA
Cuts at: 3043 3043
Size: 5473
PstI C_TGCA'G
Cuts at: 830 2748 2825 830
Size: 1918 77 3478
Fragments arranged by size:
3478 1918 77
PvuI CG_AT'CG
Cuts at: 2001 2001
Size: 5473
SalI G'TCGA_C
Cuts at: 1936 2815 1936
Size: 879 4594
SbfI CC_TGCA'GG
Cuts at: 2825 2825
Size: 5473
ScaI AGT'ACT
Cuts at: 3721 5433 3721
Size: 1712 3761
SfcI C'TryA_G
Cuts at: 826 1045 2744 2821 3956 4637 4828 826
Size: 219 1699 77 1135 681 191 1471
Fragments arranged by size:
1699 1471 1135 681 219 191 77
SgfI GCG_AT'CGC
Cuts at: 2001 2001
Size: 5473
SgrAI Cr'CCGG_yG
Cuts at: 1700 1700
Size: 5473
SmaI CCC'GGG
Cuts at: 1872 2800 1872
Size: 928 4545
SmlI C'TyrA_G
Cuts at: 820 1017 1943 2276 2313 3577 4478 4740 820
Size: 197 926 333 37 1264 901 262 1553
Fragments arranged by size:
1553 1264 926 901 333 262 197 37
SnaBI TAC'GTA
Cuts at: 493 3264 493
Size: 2771 2702
SpeI A'CTAG_T
Cuts at: 152 152
Size: 5473
SphI G_CATG'C
Cuts at: 1132 2831 1132
Size: 1699 3774
SspI AAT'ATT
Cuts at: 5 52 3397 5
Size: 47 3345 2081
Fragments arranged by size:
3345 2081 47
StuI AGG'CCT
Cuts at: 1517 1517
Size: 5473
StyI C'CwwG_G
Cuts at: 513 1065 2004 2165 2912 513
Size: 552 939 161 747 3074
Fragments arranged by size:
3074 939 747 552 161
TaqII GACCGAnnnnnnnnn_nn'
Cuts at: 325 1580 3500 3517 3670 3855 4300 325
Size: 1255 1920 17 153 185 445 1498
Fragments arranged by size:
1920 1498 1255 445 185 153 17
TatI w'GTAC_w
Cuts at: 96 370 450 483 534 1977 3719 5431 96
Size: 274 80 33 51 1443 1742 1712 138
Fragments arranged by size:
1742 1712 1443 274 138 80 51 33
TstI CACnnnnnnTCCnnnnnnn_nnnnn'
Cuts at: 2573 2605 5433 5465 2573
Size: 32 2828 32 2581
Fragments arranged by size:
2828 2581 32 32
Tth111I GACn'n_nGTC
Cuts at: 1316 1316
Size: 5473
XbaI T'CTAG_A
Cuts at: 2431 2809 2431
Size: 378 5095
XhoI C'TCGA_G
Cuts at: 1943 1943
Size: 5473
XmaI C'CCGG_G
Cuts at: 1870 2798 1870
Size: 928 4545
XmnI GAAnn'nnTTC
Cuts at: 2492 2667 3602 2492
Size: 175 935 4363
Fragments arranged by size:
4363 935 175
ZraI GAC'GTC
Cuts at: 276 329 412 598 1534 3281 276
Size: 53 83 186 936 1747 2468
Fragments arranged by size:
2468 1747 936 186 83 53
Enzymes that do cut:
AatII AccI Acc65I AclI AcuI AflII AflIII AgeI
AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI
AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI
BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI
BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI
BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI
BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI
BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI
CspCI DraI DraIII DrdI EaeI EagI EarI EciI
Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI
KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI
NdeI NheI NotI NspI PasI PciI PflMI PmeI
PmlI PpiI PshAI PsiI PstI PvuI SalI SbfI
ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI
SphI SspI StuI StyI TaqII TatI TstI Tth111I
XbaI XhoI XmaI XmnI ZraI
Enzymes that do not cut:
AarI AfeI AloI ApaI AscI AvrII BbeI BbvCI
BfrBI BplI Bpu10I BsiWI BsmBI BstXI BstZ17I Bsu36I
EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI
NaeI NarI NgoMIV NruI NsiI PacI PfoI PpuMI
PspOMI PspXI PsrI PvuII RsrII SacI SacII SanDI
SapI SexAI SfiI SfoI SrfI SwaI XcmI