(Circular) (Six-base) MAPSORT of: pFN21AE0142.seq Check: 8538 from: 1 to: 5242 pFN21AE0142 5242 bp With 182 enzymes: SgfI * October 20, 2009 10:44 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2410 2410 Size: 5242 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3052 278 Size: 53 83 186 936 1516 2468 Fragments arranged by size: 2468 1516 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2585 1937 Size: 648 4594 Acc65I G'GTAC_C Cuts at: 2563 2563 Size: 5242 AclI AA'CG_TT Cuts at: 1563 3369 3742 1563 Size: 1806 373 3063 Fragments arranged by size: 3063 1806 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3305 4689 4957 1632 Size: 1673 1384 268 1917 Fragments arranged by size: 1917 1673 1384 268 AfeI AGC'GCT Cuts at: 2409 2409 Size: 5242 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5045 AflIII A'CryG_T Cuts at: 1203 4141 5118 1203 Size: 2938 977 1327 Fragments arranged by size: 2938 1327 977 AgeI A'CCGG_T Cuts at: 4073 4073 Size: 5242 AhdI GACnn_n'nnGTC Cuts at: 3971 3971 Size: 5242 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5242 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2370 2486 1184 Size: 1186 116 3940 Fragments arranged by size: 3940 1186 116 AlwNI CAG_nnn'CTG Cuts at: 2528 2985 4557 2528 Size: 457 1572 3213 Fragments arranged by size: 3213 1572 457 ApaLI G'TGCA_C Cuts at: 3299 4455 3299 Size: 1156 4086 ApoI r'AATT_y Cuts at: 1493 2551 2777 2929 5038 1493 Size: 1058 226 152 2109 1697 Fragments arranged by size: 2109 1697 1058 226 152 AseI AT'TA_AT Cuts at: 160 1032 3796 160 Size: 872 2764 1606 Fragments arranged by size: 2764 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5242 AvaI C'yCGr_G Cuts at: 1870 1943 2567 1870 Size: 73 624 4545 Fragments arranged by size: 4545 624 73 BamHI G'GATC_C Cuts at: 2572 2939 2572 Size: 367 4875 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2310 2431 2444 2563 4018 Size: 325 217 627 523 121 13 119 1455 Cuts at: 4018 618 Size: 1842 Fragments arranged by size: 1842 1455 627 523 325 217 121 119 13 BanII G_rGCy'C Cuts at: 1391 2561 1391 Size: 1170 4072 BbeI G_GCGC'C Cuts at: 2314 2435 2448 2314 Size: 121 13 5108 Fragments arranged by size: 5108 121 13 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4271 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3433 3467 1903 Size: 34 1496 34 3678 Fragments arranged by size: 3678 1496 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3134 4344 3134 Size: 1210 4032 BclI T'GATC_A Cuts at: 1548 1548 Size: 5242 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3853 136 Size: 107 122 71 631 605 2181 1525 Fragments arranged by size: 2181 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5237 5237 Size: 5242 BlpI GC'TnA_GC Cuts at: 2659 2659 Size: 5242 Bme1580I G_kGCm'C Cuts at: 1790 2201 3303 4459 1790 Size: 411 1102 1156 2573 Fragments arranged by size: 2573 1156 1102 411 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5242 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2164 2973 3931 Size: 416 53 83 399 24 747 809 958 Cuts at: 3931 442 Size: 1753 Fragments arranged by size: 1753 958 809 747 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5242 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2321 2471 3902 1239 Size: 1082 150 1431 2579 Fragments arranged by size: 2579 1431 1082 150 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3367 4232 4530 3367 Size: 865 298 4079 Fragments arranged by size: 4079 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 3905 882 Size: 617 2406 2219 Fragments arranged by size: 2406 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3033 493 Size: 711 1829 2702 Fragments arranged by size: 2702 1829 711 BsaBI GATnn'nnATC Cuts at: 2180 5236 2180 Size: 3056 2186 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2311 2432 2445 3049 Size: 53 83 186 936 778 121 13 604 Cuts at: 3049 3431 4066 275 Size: 382 635 1451 Fragments arranged by size: 1451 936 778 635 604 382 186 121 83 53 13 BsaWI w'CCGG_w Cuts at: 3675 4073 4347 4494 4905 3675 Size: 398 274 147 411 4012 Fragments arranged by size: 4012 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5017 Fragments arranged by size: 5017 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2237 2354 2357 1186 Size: 1051 117 3 4071 Fragments arranged by size: 4071 1051 117 3 BseYI C'CCAG_C Cuts at: 2239 2254 2487 4445 4941 2239 Size: 15 233 1958 496 2540 Fragments arranged by size: 2540 1958 496 233 15 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2444 1163 Size: 573 708 3961 Fragments arranged by size: 3961 708 573 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2506 2692 3453 4481 1540 Size: 275 186 505 186 761 1028 2301 Fragments arranged by size: 2301 1028 761 505 275 186 186 BsiHKAI G_wGCw'C Cuts at: 3303 3388 4459 3303 Size: 85 1071 4086 Fragments arranged by size: 4086 1071 85 BsmI GAATG_Cn' Cuts at: 2753 2846 2753 Size: 93 5149 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2201 2561 3303 3388 4459 1391 Size: 399 411 360 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 411 399 360 85 BspEI T'CCGG_A Cuts at: 4905 4905 Size: 5242 BspHI T'CATG_A Cuts at: 3131 4861 3131 Size: 1730 3512 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2047 2410 2597 844 Size: 1203 363 187 3489 Fragments arranged by size: 3489 1203 363 187 BsrBI CCG'CTC Cuts at: 1394 1823 3129 1394 Size: 429 1306 3507 Fragments arranged by size: 3507 1306 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3737 3911 65 Size: 1183 2489 174 1396 Fragments arranged by size: 2489 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2137 2505 3886 4073 1700 Size: 110 327 368 1381 187 2869 Fragments arranged by size: 2869 1381 368 327 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5242 BssHII G'CGCG_C Cuts at: 1925 2482 1925 Size: 557 4685 BssSI C'ACGA_G Cuts at: 3302 4314 3302 Size: 1012 4230 BstAPI GCAn_nnn'nTGC Cuts at: 794 2479 2528 794 Size: 1685 49 3508 Fragments arranged by size: 3508 1685 49 BstBI TT'CG_AA Cuts at: 4046 4046 Size: 5242 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5242 BstXI CCAn_nnnn'nTGG Cuts at: 2011 2011 Size: 5242 BstYI r'GATC_y Cuts at: 1972 2572 2939 3324 3341 4793 4879 4891 5237 Size: 600 367 385 17 1452 86 12 346 Cuts at: 5237 1972 Size: 1977 Fragments arranged by size: 1977 1452 600 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3751 Fragments arranged by size: 3751 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4503 Fragments arranged by size: 4503 683 56 BtsI GCAGTG_nn' Cuts at: 2529 2758 3552 3572 2529 Size: 229 794 20 4199 Fragments arranged by size: 4199 794 229 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5242 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5207 DraI TTT'AAA Cuts at: 2546 2546 Size: 5242 DraIII CAC_nnn'GTG Cuts at: 2158 2524 2158 Size: 366 4876 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4249 809 Size: 507 2933 1802 Fragments arranged by size: 2933 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2503 2689 3578 Size: 54 1425 50 275 18 673 186 889 Cuts at: 3578 5207 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 673 275 186 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2503 2689 1537 Size: 275 691 186 4090 Fragments arranged by size: 4090 691 275 186 EarI CTCTTCn'nnn_ Cuts at: 1353 3172 1353 Size: 1819 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3829 4203 4349 387 Size: 1064 138 2240 374 146 1280 Fragments arranged by size: 2240 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2321 2471 3305 3902 4689 4957 1239 Size: 393 689 150 834 597 787 268 1524 Fragments arranged by size: 1524 834 787 689 597 393 268 150 EcoRI G'AATT_C Cuts at: 2551 2929 2551 Size: 378 4864 FspI TGC'GCA Cuts at: 2180 2462 3748 2180 Size: 282 1286 3674 Fragments arranged by size: 3674 1286 282 FspAI rTGC'GCAy Cuts at: 2180 2180 Size: 5242 HaeII r_GCGC'y Cuts at: 1678 2314 2332 2396 2402 2411 2435 2448 4389 Size: 636 18 64 6 9 24 13 1941 Cuts at: 4389 1678 Size: 2531 Fragments arranged by size: 2531 1941 636 64 24 18 13 9 6 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3883 3915 3957 3989 1373 Size: 32 135 32 2311 32 42 32 2626 Fragments arranged by size: 2626 2311 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2586 2832 669 Size: 988 281 648 246 3079 Fragments arranged by size: 3079 988 648 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5242 HpaI GTT'AAC Cuts at: 2832 2832 Size: 5242 KasI G'GCGC_C Cuts at: 2310 2431 2444 2310 Size: 121 13 5108 Fragments arranged by size: 5108 121 13 KpnI G_GTAC'C Cuts at: 2567 2567 Size: 5242 MfeI C'AATT_G Cuts at: 2841 2841 Size: 5242 MluI A'CGCG_T Cuts at: 5118 5118 Size: 5242 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4356 4540 1305 Size: 3051 184 2007 Fragments arranged by size: 3051 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3420 Fragments arranged by size: 3420 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2009 3200 3559 3718 518 Size: 648 843 1191 359 159 2042 Fragments arranged by size: 2042 1191 843 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2215 2658 3335 4483 4728 1606 Size: 609 443 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 609 443 245 NaeI GCC'GGC Cuts at: 2139 2139 Size: 5242 NarI GG'CG_CC Cuts at: 2311 2432 2445 2311 Size: 121 13 5108 Fragments arranged by size: 5108 121 13 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3751 Fragments arranged by size: 3751 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5242 NgoMIV G'CCGG_C Cuts at: 2137 2137 Size: 5242 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5242 NotI GC'GGCC_GC Cuts at: 2689 2689 Size: 5242 NspI r_CATG'y Cuts at: 1132 1229 2600 4145 1132 Size: 97 1371 1545 2229 Fragments arranged by size: 2229 1545 1371 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5242 PciI A'CATG_T Cuts at: 4141 4141 Size: 5242 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5242 PmeI GTTT'AAAC Cuts at: 2546 2546 Size: 5242 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3311 3343 4824 4856 3311 Size: 32 1481 32 3697 Fragments arranged by size: 3697 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5242 PsiI TTA'TAA Cuts at: 2812 2812 Size: 5242 PstI C_TGCA'G Cuts at: 830 2415 2594 830 Size: 1585 179 3478 Fragments arranged by size: 3478 1585 179 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5242 RsrII CG'GwC_CG Cuts at: 2508 2508 Size: 5242 SalI G'TCGA_C Cuts at: 1936 2584 1936 Size: 648 4594 SbfI CC_TGCA'GG Cuts at: 2594 2594 Size: 5242 ScaI AGT'ACT Cuts at: 2306 3490 5202 2306 Size: 1184 1712 2346 Fragments arranged by size: 2346 1712 1184 SfcI C'TryA_G Cuts at: 826 1045 2411 2590 3725 4406 4597 826 Size: 219 1366 179 1135 681 191 1471 Fragments arranged by size: 1471 1366 1135 681 219 191 179 SfoI GGC'GCC Cuts at: 2312 2433 2446 2312 Size: 121 13 5108 Fragments arranged by size: 5108 121 13 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5242 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5242 SmaI CCC'GGG Cuts at: 1872 2569 1872 Size: 697 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3346 4247 4509 820 Size: 197 926 1403 901 262 1553 Fragments arranged by size: 1553 1403 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3033 493 Size: 2540 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5242 SphI G_CATG'C Cuts at: 1132 2600 1132 Size: 1468 3774 SspI AAT'ATT Cuts at: 5 52 3166 5 Size: 47 3114 2081 Fragments arranged by size: 3114 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5242 StyI C'CwwG_G Cuts at: 513 1065 2004 2681 513 Size: 552 939 677 3074 Fragments arranged by size: 3074 939 677 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2146 3269 3286 3439 3624 4069 325 Size: 1255 566 1123 17 153 185 445 1498 Fragments arranged by size: 1498 1255 1123 566 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2304 3488 5200 Size: 274 80 33 51 1443 327 1184 1712 Cuts at: 5200 96 Size: 138 Fragments arranged by size: 1712 1443 1184 327 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5202 5234 5202 Size: 32 5210 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5242 XbaI T'CTAG_A Cuts at: 2578 2578 Size: 5242 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2275 2275 Size: 5242 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5242 XmaI C'CCGG_G Cuts at: 1870 2567 1870 Size: 697 4545 XmnI GAAnn'nnTTC Cuts at: 3371 3371 Size: 5242 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3050 276 Size: 53 83 186 936 1516 2468 Fragments arranged by size: 2468 1516 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbeI BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI FspAI HaeII Hin4I HincII HindIII HpaI KasI KpnI MfeI MluI MmeI MscI MslI MspA1I NaeI NarI NcoI NdeI NgoMIV NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI RsrII SalI SbfI ScaI SfcI SfoI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AloI ApaI AscI AvrII BaeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I EcoICRI EcoNI EcoO109I EcoRV FalI FseI NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI PvuII SacI SacII SanDI SapI SexAI SfiI SrfI SwaI