Result of FASTA (ccds) for
pFN21AB7954
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7954, 395 aa
1>>>pF1KB7954 395 - 395 aa - 395 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.5596+/-0.00121; mu= 7.6508+/- 0.073
mean_var=188.1883+/-38.247, 0's: 0 Z-trim(106.8): 228 B-trim: 0 in 0/53
Lambda= 0.093493
statistics sampled from 8925 (9176) to 8925 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.631), E-opt: 0.2 (0.282), width: 16
Scan time: 3.020
The best scores are: opt bits E(32554)
CCDS32239.1 GABPB1 gene_id:2553|Hs108|chr15 ( 395) 2479 347.2 1.6e-95
CCDS45258.1 GABPB1 gene_id:2553|Hs108|chr15 ( 360) 2179 306.7 2.3e-83
CCDS983.1 GABPB2 gene_id:126626|Hs108|chr1 ( 448) 1646 234.9 1.2e-61
CCDS10135.1 GABPB1 gene_id:2553|Hs108|chr15 ( 383) 1327 191.8 9.3e-49
CCDS10136.1 GABPB1 gene_id:2553|Hs108|chr15 ( 348) 1287 186.3 3.7e-47
CCDS81373.1 GABPB2 gene_id:126626|Hs108|chr1 ( 410) 989 146.2 5.2e-35
>>CCDS32239.1 GABPB1 gene_id:2553|Hs108|chr15 (395 aa)
initn: 2479 init1: 2479 opt: 2479 Z-score: 1828.4 bits: 347.2 E(32554): 1.6e-95
Smith-Waterman score: 2479; 100.0% identity (100.0% similar) in 395 aa overlap (1-395:1-395)
10 20 30 40 50 60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS32 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
310 320 330 340 350 360
370 380 390
pF1KB7 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
:::::::::::::::::::::::::::::::::::
CCDS32 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
370 380 390
>>CCDS45258.1 GABPB1 gene_id:2553|Hs108|chr15 (360 aa)
initn: 2397 init1: 2179 opt: 2179 Z-score: 1610.3 bits: 306.7 E(32554): 2.3e-83
Smith-Waterman score: 2179; 99.1% identity (99.1% similar) in 350 aa overlap (1-350:1-350)
10 20 30 40 50 60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS45 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB7 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
::::::::::::::::::::::::::::::::::::::::::::: : :
CCDS45 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEVRSLLPGVLCRSHPK
310 320 330 340 350 360
370 380 390
pF1KB7 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
>>CCDS983.1 GABPB2 gene_id:126626|Hs108|chr1 (448 aa)
initn: 1501 init1: 1072 opt: 1646 Z-score: 1220.5 bits: 234.9 E(32554): 1.2e-61
Smith-Waterman score: 1646; 68.5% identity (86.2% similar) in 400 aa overlap (1-391:1-398)
10 20 30 40 50 60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
::::::::.:::::: ::::::: :::::::::::::::::::::::::::::.::::::
CCDS98 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
:::::::::::::::::::..::: :::.:...::::::::::::::::::::..:..::
CCDS98 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVT--IHA
:::::::::::. ::: :.::::.....: .. ::: :::::.:.::: . :: .
CCDS98 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 ATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLS
:.: ::. : ::::..:.:: :.. .. . .:.:::.::.::::::::::::::.:::
CCDS98 AAP-FIFTSGEVVNLASLISSTNTKTTSGDPHASTVQFSNSTTSVLATLAALAEASVPLS
190 200 210 220 230
240 250 260 270 280 290
pF1KB7 NSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLH-SIPTSGIGQPI
:: .. .. :::.. ..:::..::::..::::.::::::::. :::.. ::::.:::::.
CCDS98 NSHRA-TANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPF
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB7 IVTMPDGQQVLTVPATDIAEETVISEE-----PPAKRQCIEIIENRVE-SAEIEEREALQ
:::. :::::::::: .::::::.:: : .:. : : :: : : .::: ::
CCDS98 IVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQ
300 310 320 330 340 350
360 370 380 390
pF1KB7 KQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
.::.::::.::.::.:::::::::: :: ::::..: : :
CCDS98 QQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTE
360 370 380 390 400 410
CCDS98 GELEERETKVTGSAGTTEPHTRVSMATVSS
420 430 440
>>CCDS10135.1 GABPB1 gene_id:2553|Hs108|chr15 (383 aa)
initn: 1325 init1: 1260 opt: 1327 Z-score: 988.8 bits: 191.8 E(32554): 9.3e-49
Smith-Waterman score: 2378; 97.0% identity (97.0% similar) in 395 aa overlap (1-395:1-383)
10 20 30 40 50 60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
:::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS10 PQFIIGPGGVVNLT------------DETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
190 200 210 220
250 260 270 280 290 300
pF1KB7 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB7 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
290 300 310 320 330 340
370 380 390
pF1KB7 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
:::::::::::::::::::::::::::::::::::
CCDS10 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
350 360 370 380
>>CCDS10136.1 GABPB1 gene_id:2553|Hs108|chr15 (348 aa)
initn: 2132 init1: 1260 opt: 1287 Z-score: 960.2 bits: 186.3 E(32554): 3.7e-47
Smith-Waterman score: 2078; 95.7% identity (95.7% similar) in 350 aa overlap (1-350:1-338)
10 20 30 40 50 60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVTIHAAT
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 PQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
:::::::::::::: ::::::::::::::::::::::::::::::::::
CCDS10 PQFIIGPGGVVNLT------------DETGVSAVQFGNSSTSVLATLAALAEASAPLSNS
190 200 210 220
250 260 270 280 290 300
pF1KB7 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS10 SETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLHSIPTSGIGQPIIVT
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB7 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEEREALQKQLDEANRE
::::::::::::::::::::::::::::::::::::::::::::: : :
CCDS10 MPDGQQVLTVPATDIAEETVISEEPPAKRQCIEIIENRVESAEIEVRSLLPGVLCRSHPK
290 300 310 320 330 340
370 380 390
pF1KB7 AQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
>>CCDS81373.1 GABPB2 gene_id:126626|Hs108|chr1 (410 aa)
initn: 1555 init1: 914 opt: 989 Z-score: 742.1 bits: 146.2 E(32554): 5.2e-35
Smith-Waterman score: 1433; 62.5% identity (77.5% similar) in 400 aa overlap (1-391:1-360)
10 20 30 40 50 60
pF1KB7 MSLVDLGKKLLEAARAGQDDEVRILMANGAPFTTDWLGTSPLHLAAQYGHYSTTEVLLRA
::::::::.:::::: ::::::: :::::::::::::::::::::::::::::.::::::
CCDS81 MSLVDLGKRLLEAARKGQDDEVRTLMANGAPFTTDWLGTSPLHLAAQYGHYSTAEVLLRA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 GVSRDARTKVDRTPLHMAASEGHASIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVV
:::::::::::::::::::..::: :::.:...::::::::::::::::::::..:..::
CCDS81 GVSRDARTKVDRTPLHMAAADGHAHIVELLVRNGADVNAKDMLKMTALHWATERHHRDVV
70 80 90 100 110 120
130 140 150 160 170
pF1KB7 ELLIKYGADVHTQSKFCKTAFDISIDNGNEDLAEILQIAMQNQINTNPESPDTVT--IHA
:::::::::::. ::: :.::::.....: .. ::: :::::.:.::: . :: .
CCDS81 ELLIKYGADVHAFSKFDKSAFDIALEKNNAEILVILQEAMQNQVNVNPERANPVTDPVSM
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB7 ATPQFIIGPGGVVNLTGLVSSENSSKATDETGVSAVQFGNSSTSVLATLAALAEASAPLS
:.: ::. : ::::..:.:: :.
CCDS81 AAP-FIFTSGEVVNLASLISSTNT------------------------------------
190 200
240 250 260 270 280 290
pF1KB7 NSSETPVVATEEVVTAESVDGAIQQVVSSGGQQVITIVTDGIQLGNLH-SIPTSGIGQPI
.: . :::.. ..:::..::::..::::.::::::::. :::.. ::::.:::::.
CCDS81 ---KTTSANTEEIIEGNSVDSSIQQVMGSGGQRVITIVTDGVPLGNIQTSIPTGGIGQPF
210 220 230 240 250 260
300 310 320 330 340 350
pF1KB7 IVTMPDGQQVLTVPATDIAEETVISEE-----PPAKRQCIEIIENRVE-SAEIEEREALQ
:::. :::::::::: .::::::.:: : .:. : : :: : : .::: ::
CCDS81 IVTVQDGQQVLTVPAGKVAEETVIKEEEEEKLPLTKKPRIGEKTNSVEESKEGNERELLQ
270 280 290 300 310 320
360 370 380 390
pF1KB7 KQLDEANREAQKYRQQLLKKEQEAEAYRQKLEAMTRLQTNKEAV
.::.::::.::.::.:::::::::: :: ::::..: : :
CCDS81 QQLQEANRRAQEYRHQLLKKEQEAEQYRLKLEAIARQQPNGVDFTMVEEVAEVDAVVVTE
330 340 350 360 370 380
CCDS81 GELEERETKVTGSAGTTEPHTRVSMATVSS
390 400 410
395 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 19:50:43 2016 done: Sat Nov 5 19:50:43 2016
Total Scan time: 3.020 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]