Result of FASTA (ccds) for
pFN21AF0190
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KF0190, 520 aa
1>>>pF1KF0190 520 - 520 aa - 520 aa
Library: human.CCDS.faa
18921897 residues in 33420 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.6860+/-0.00068; mu= 8.3534+/- 0.041
mean_var=142.2001+/-28.579, 0's: 0 Z-trim(115.5): 15 B-trim: 182 in 1/52
Lambda= 0.107553
statistics sampled from 16310 (16322) to 16310 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.803), E-opt: 0.2 (0.488), width: 16
Scan time: 1.810
The best scores are: opt bits E(33420)
CCDS248.1 IFNLR1 gene_id:163702|Hs109|chr1 ( 520) 3631 574.6 9.9e-164
CCDS249.1 IFNLR1 gene_id:163702|Hs109|chr1 ( 491) 1872 301.6 1.4e-81
CCDS250.1 IFNLR1 gene_id:163702|Hs109|chr1 ( 244) 1555 252.3 4.9e-67
>>CCDS248.1 IFNLR1 gene_id:163702|Hs109|chr1 (520 aa)
initn: 3631 init1: 3631 opt: 3631 Z-score: 3053.2 bits: 574.6 E(33420): 9.9e-164
Smith-Waterman score: 3631; 100.0% identity (100.0% similar) in 520 aa overlap (1-520:1-520)
10 20 30 40 50 60
pF1KF0 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KF0 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KF0 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KF0 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KF0 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR
250 260 270 280 290 300
310 320 330 340 350 360
pF1KF0 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
310 320 330 340 350 360
370 380 390 400 410 420
pF1KF0 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
370 380 390 400 410 420
430 440 450 460 470 480
pF1KF0 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
430 440 450 460 470 480
490 500 510 520
pF1KF0 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
::::::::::::::::::::::::::::::::::::::::
CCDS24 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
490 500 510 520
>>CCDS249.1 IFNLR1 gene_id:163702|Hs109|chr1 (491 aa)
initn: 1904 init1: 1856 opt: 1872 Z-score: 1578.5 bits: 301.6 E(33420): 1.4e-81
Smith-Waterman score: 3352; 94.4% identity (94.4% similar) in 520 aa overlap (1-520:1-491)
10 20 30 40 50 60
pF1KF0 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KF0 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KF0 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KF0 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KF0 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR
::::::::::::::::::::::::::: ::::
CCDS24 VIAAGGVIWKTLMGNPWFQRAKMPRAL-----------------------------ELTR
250 260 270
310 320 330 340 350 360
pF1KF0 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 GVRPTPRVRAPATQQTRWKKDLAEDEEEEDEEDTEDGVSFQPYIEPPSFLGQEHQAPGHS
280 290 300 310 320 330
370 380 390 400 410 420
pF1KF0 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 EAGGVDSGRPRAPLVPSEGSSAWDSSDRSWASTVDSSWDRAGSSGYLAEKGPGQGPGGDG
340 350 360 370 380 390
430 440 450 460 470 480
pF1KF0 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS24 HQESLPPPEFSKDSGFLEELPEDNLSSWATWGTLPPEPNLVPGGPPVSLQTLTFCWESSP
400 410 420 430 440 450
490 500 510 520
pF1KF0 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
::::::::::::::::::::::::::::::::::::::::
CCDS24 EEEEEARESEIEDSDAGSWGAESTQRTEDRGRTLGHYMAR
460 470 480 490
>>CCDS250.1 IFNLR1 gene_id:163702|Hs109|chr1 (244 aa)
initn: 1549 init1: 1549 opt: 1555 Z-score: 1317.2 bits: 252.3 E(33420): 4.9e-67
Smith-Waterman score: 1555; 98.7% identity (98.7% similar) in 227 aa overlap (1-227:1-227)
10 20 30 40 50 60
pF1KF0 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 MAGPERWGPLLLCLLQAAPGRPRLAPPQNVTLLSQNFSVYLTWLPGLGNPQDVTYFVAYQ
10 20 30 40 50 60
70 80 90 100 110 120
pF1KF0 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 SSPTRRRWREVEECAGTKELLCSMMCLKKQDLYNKFKGRVRTVSPSSKSPWVESEYLDYL
70 80 90 100 110 120
130 140 150 160 170 180
pF1KF0 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS25 FEVEPAPPVLVLTQTEEILSANATYQLPPCMPPLDLKYEVAFWKEGAGNKTLFPVTPHGQ
130 140 150 160 170 180
190 200 210 220 230 240
pF1KF0 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPEANWAFLVLPSLLILLL
::::::::::::::::::::::::::::::::::::::::::: :
CCDS25 PVQITLQPAASEHHCLSARTIYTFSVPKYSKFSKPTCFLLEVPGLFWTHTPCGNLSAQQT
190 200 210 220 230 240
250 260 270 280 290 300
pF1KF0 VIAAGGVIWKTLMGNPWFQRAKMPRALDFSGHTHPVATFQPSRPESVNDLFLCPQKELTR
CCDS25 RVRE
520 residues in 1 query sequences
18921897 residues in 33420 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Thu Jul 18 21:05:58 2019 done: Thu Jul 18 21:05:59 2019
Total Scan time: 1.810 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]