(Linear) (Six-base) MAPSORT of: KIAA1417.seq Check: 4834 from: 1 to: 4059 KIAA1417.orf With 182 enzymes: SgfI * July 3, 2012 15:59 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 0 531 4059 Size: 531 3528 AccI GT'mk_AC Cuts at: 0 3393 4059 Size: 3393 666 Acc65I G'GTAC_C Cuts at: 0 3739 4059 Size: 3739 320 AclI AA'CG_TT Cuts at: 0 2964 4059 Size: 2964 1095 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 0 64 755 1300 1781 2169 2290 2638 3110 Size: 64 691 545 481 388 121 348 472 Cuts at: 3110 3797 4007 4059 Size: 687 210 52 Fragments arranged by size: 691 687 545 481 472 388 348 210 121 64 52 AflIII A'CryG_T Cuts at: 0 1877 4059 Size: 1877 2182 AhdI GACnn_n'nnGTC Cuts at: 0 249 4059 Size: 249 3810 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 0 2183 4059 Size: 2183 1876 AloI GAACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 2905 2937 4059 Size: 2905 32 1122 Fragments arranged by size: 2905 1122 32 AlwNI CAG_nnn'CTG Cuts at: 0 3088 3820 4059 Size: 3088 732 239 Fragments arranged by size: 3088 732 239 ApoI r'AATT_y Cuts at: 0 453 556 1214 1346 1499 1610 1801 1992 Size: 453 103 658 132 153 111 191 191 Cuts at: 1992 2013 2176 2335 2641 3699 4059 Size: 21 163 159 306 1058 360 Fragments arranged by size: 1058 658 453 360 306 191 191 163 159 153 132 111 103 21 AseI AT'TA_AT Cuts at: 0 2237 4059 Size: 2237 1822 BanI G'GyrC_C Cuts at: 0 1841 3708 3739 4059 Size: 1841 1867 31 320 Fragments arranged by size: 1867 1841 320 31 BbsI GAAGACnn'nnnn_ Cuts at: 0 1305 4059 Size: 1305 2754 BclI T'GATC_A Cuts at: 0 2553 4059 Size: 2553 1506 BfrBI ATG'CAT Cuts at: 0 3571 4059 Size: 3571 488 BmgBI CAC'GTC Cuts at: 0 1306 2307 4059 Size: 1306 1001 1752 Fragments arranged by size: 1752 1306 1001 BmrI ACTGGGnnnn_n' Cuts at: 0 949 3278 3835 4059 Size: 949 2329 557 224 Fragments arranged by size: 2329 949 557 224 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 96 501 635 1278 2999 4059 Size: 96 405 134 643 1721 1060 Fragments arranged by size: 1721 1060 643 405 134 96 Bpu10I CC'TnA_GC Cuts at: 0 710 4059 Size: 710 3349 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 0 1528 4059 Size: 1528 2531 BsaI GGTCTCn'nnnn_ Cuts at: 0 314 999 2735 4059 Size: 314 685 1736 1324 Fragments arranged by size: 1736 1324 685 314 BsaAI yAC'GTr Cuts at: 0 2959 4059 Size: 2959 1100 BsaBI GATnn'nnATC Cuts at: 0 532 4059 Size: 532 3527 BsaWI w'CCGG_w Cuts at: 0 2780 4059 Size: 2780 1279 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 0 1040 1070 4059 Size: 1040 30 2989 Fragments arranged by size: 2989 1040 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 0 974 3949 4059 Size: 974 2975 110 Fragments arranged by size: 2975 974 110 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 0 6 1712 2444 4059 Size: 6 1706 732 1615 Fragments arranged by size: 1706 1615 732 6 BsmI GAATG_Cn' Cuts at: 0 165 1220 1685 1752 2628 3573 3588 4059 Size: 165 1055 465 67 876 945 15 471 Fragments arranged by size: 1055 945 876 471 465 165 67 15 BspHI T'CATG_A Cuts at: 0 1689 4059 Size: 1689 2370 BspMI ACCTGCnnnn'nnnn_ Cuts at: 0 531 579 866 4059 Size: 531 48 287 3193 Fragments arranged by size: 3193 531 287 48 BsrDI GCAATG_nn' Cuts at: 0 265 1016 1235 2657 2804 4059 Size: 265 751 219 1422 147 1255 Fragments arranged by size: 1422 1255 751 265 219 147 BstAPI GCAn_nnn'nTGC Cuts at: 0 546 4059 Size: 546 3513 BstXI CCAn_nnnn'nTGG Cuts at: 0 3054 4059 Size: 3054 1005 BstYI r'GATC_y Cuts at: 0 228 369 507 954 1551 1587 2763 3360 Size: 228 141 138 447 597 36 1176 597 Cuts at: 3360 4059 Size: 699 Fragments arranged by size: 1176 699 597 597 447 228 141 138 36 BtgI C'CryG_G Cuts at: 0 3235 3735 3830 4059 Size: 3235 500 95 229 Fragments arranged by size: 3235 500 229 95 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 0 2762 4059 Size: 2762 1297 BtsI GCAGTG_nn' Cuts at: 0 1291 1754 4059 Size: 1291 463 2305 Fragments arranged by size: 2305 1291 463 DraI TTT'AAA Cuts at: 0 1334 3230 3687 4059 Size: 1334 1896 457 372 Fragments arranged by size: 1896 1334 457 372 DraIII CAC_nnn'GTG Cuts at: 0 567 4059 Size: 567 3492 DrdI GACnn_nn'nnGTC Cuts at: 0 680 4059 Size: 680 3379 EarI CTCTTCn'nnn_ Cuts at: 0 1391 1637 1726 2089 2802 3068 3983 4059 Size: 1391 246 89 363 713 266 915 76 Fragments arranged by size: 1391 915 713 363 266 246 89 76 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 0 64 96 501 635 755 1278 1300 1781 Size: 64 32 405 134 120 523 22 481 Cuts at: 1781 2169 2290 2638 2999 3110 3797 4007 4059 Size: 388 121 348 361 111 687 210 52 Fragments arranged by size: 687 523 481 405 388 361 348 210 134 121 120 111 64 52 32 22 EcoRI G'AATT_C Cuts at: 0 1499 1992 4059 Size: 1499 493 2067 Fragments arranged by size: 2067 1499 493 EcoRV GAT'ATC Cuts at: 0 2871 4059 Size: 2871 1188 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 0 3907 4059 Size: 3907 152 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 0 10 42 235 267 499 531 1040 1072 Size: 10 32 193 32 232 32 509 32 Cuts at: 1072 1417 1449 3115 3147 4059 Size: 345 32 1666 32 912 Fragments arranged by size: 1666 912 509 345 232 193 32 32 32 32 32 32 10 HincII GTy'rAC Cuts at: 0 1269 3077 4059 Size: 1269 1808 982 Fragments arranged by size: 1808 1269 982 KpnI G_GTAC'C Cuts at: 0 3743 4059 Size: 3743 316 MslI CAynn'nnrTG Cuts at: 0 30 635 2024 2298 2351 4059 Size: 30 605 1389 274 53 1708 Fragments arranged by size: 1708 1389 605 274 53 30 MspA1I CmG'CkG Cuts at: 0 706 1618 4059 Size: 706 912 2441 Fragments arranged by size: 2441 912 706 NcoI C'CATG_G Cuts at: 0 3235 3735 3830 4059 Size: 3235 500 95 229 Fragments arranged by size: 3235 500 229 95 NdeI CA'TA_TG Cuts at: 0 1163 4059 Size: 1163 2896 NsiI A_TGCA'T Cuts at: 0 3573 4059 Size: 3573 486 NspI r_CATG'y Cuts at: 0 52 650 1881 3943 4059 Size: 52 598 1231 2062 116 Fragments arranged by size: 2062 1231 598 116 52 PasI CC'CwG_GG Cuts at: 0 462 4059 Size: 462 3597 PciI A'CATG_T Cuts at: 0 1877 4059 Size: 1877 2182 PflMI CCAn_nnn'nTGG Cuts at: 0 3800 4059 Size: 3800 259 PfoI T'CCnGG_A Cuts at: 0 517 612 3611 4059 Size: 517 95 2999 448 Fragments arranged by size: 2999 517 448 95 PsiI TTA'TAA Cuts at: 0 2987 4059 Size: 2987 1072 PsrI GAACnnnnnnTACnnnnnnn_nnnnn' Cuts at: 0 1850 1882 4059 Size: 1850 32 2177 Fragments arranged by size: 2177 1850 32 PstI C_TGCA'G Cuts at: 0 1583 1839 4059 Size: 1583 256 2220 Fragments arranged by size: 2220 1583 256 PvuII CAG'CTG Cuts at: 0 706 1618 4059 Size: 706 912 2441 Fragments arranged by size: 2441 912 706 SapI GCTCTTCn'nnn_ Cuts at: 0 2089 4059 Size: 2089 1970 SfcI C'TryA_G Cuts at: 0 422 1052 1579 1835 3020 4059 Size: 422 630 527 256 1185 1039 Fragments arranged by size: 1185 1039 630 527 422 256 SmlI C'TyrA_G Cuts at: 0 1507 4059 Size: 1507 2552 SphI G_CATG'C Cuts at: 0 52 3943 4059 Size: 52 3891 116 Fragments arranged by size: 3891 116 52 SspI AAT'ATT Cuts at: 0 2130 2377 4059 Size: 2130 247 1682 Fragments arranged by size: 2130 1682 247 StuI AGG'CCT Cuts at: 0 103 4059 Size: 103 3956 StyI C'CwwG_G Cuts at: 0 3235 3494 3735 3830 4059 Size: 3235 259 241 95 229 Fragments arranged by size: 3235 259 241 229 95 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 0 24 4059 Size: 24 4035 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 0 160 192 4059 Size: 160 32 3867 Fragments arranged by size: 3867 160 32 XbaI T'CTAG_A Cuts at: 0 3783 4059 Size: 3783 276 XcmI CCAnnnn_n'nnnnTGG Cuts at: 0 2319 3569 4059 Size: 2319 1250 490 Fragments arranged by size: 2319 1250 490 XmnI GAAnn'nnTTC Cuts at: 0 1410 1499 2378 3062 4059 Size: 1410 89 879 684 997 Fragments arranged by size: 1410 997 879 684 89 Enzymes that do cut: AarI AccI Acc65I AclI AcuI AflIII AhdI AlfI AloI AlwNI ApoI AseI BanI BbsI BclI BfrBI BmgBI BmrI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaWI BsaXI BseRI BsgI BsmI BspHI BspMI BsrDI BstAPI BstXI BstYI BtgI BtgZI BtsI DraI DraIII DrdI EarI Eco57MI EcoRI EcoRV FalI Hin4I HincII KpnI MslI MspA1I NcoI NdeI NsiI NspI PasI PciI PflMI PfoI PsiI PsrI PstI PvuII SapI SfcI SmlI SphI SspI StuI StyI TaqII TstI XbaI XcmI XmnI Enzymes that do not cut: AatII AfeI AflII AgeI AleI ApaI ApaLI AscI AsiSI AvaI AvrII BaeI BamHI BanII BbeI BbvCI BcgI BciVI BglI BglII BlpI Bme1580I BmtI BplI BsaHI BseYI BsiEI BsiHKAI BsiWI BsmBI Bsp1286I BspEI BsrBI BsrFI BsrGI BssHII BssSI BstBI BstEII BstZ17I Bsu36I ClaI CspCI EaeI EagI EciI EcoICRI EcoNI EcoO109I FseI FspI FspAI HaeII HindIII HpaI KasI MfeI MluI MmeI MscI NaeI NarI NgoMIV NheI NotI NruI PacI PmeI PmlI PpiI PpuMI PshAI PspOMI PspXI PvuI RsrII SacI SacII SalI SanDI SbfI ScaI SexAI SfiI SfoI SgfI SgrAI SmaI SnaBI SpeI SrfI SwaI TatI Tth111I XhoI XmaI ZraI