Result of FASTA (omim) for pFN21AB6446
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6446, 347 aa
  1>>>pF1KB6446 347 - 347 aa - 347 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 9.5951+/-0.000351; mu= 0.0462+/- 0.022
 mean_var=355.9533+/-71.640, 0's: 0 Z-trim(125.3): 30  B-trim: 0 in 0/61
 Lambda= 0.067979
 statistics sampled from 48619 (48649) to 48619 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.836), E-opt: 0.2 (0.57), width:  16
 Scan time: 10.040

The best scores are:                                      opt bits E(85289)
XP_011536324 (OMIM: 613142) PREDICTED: probable E3 ( 347) 2428 251.1 2.6e-66
XP_005268760 (OMIM: 613142) PREDICTED: probable E3 ( 347) 2428 251.1 2.6e-66
NP_001273175 (OMIM: 613142) probable E3 ubiquitin- ( 347) 2428 251.1 2.6e-66
NP_848597 (OMIM: 613142) probable E3 ubiquitin-pro ( 347) 2428 251.1 2.6e-66
NP_001273174 (OMIM: 613142) probable E3 ubiquitin- ( 350) 2394 247.8 2.6e-65
XP_005268754 (OMIM: 613142) PREDICTED: probable E3 ( 350) 2394 247.8 2.6e-65
XP_005268757 (OMIM: 613142) PREDICTED: probable E3 ( 350) 2394 247.8 2.6e-65
XP_005268755 (OMIM: 613142) PREDICTED: probable E3 ( 350) 2394 247.8 2.6e-65
NP_612144 (OMIM: 613143) E3 ubiquitin-protein liga ( 740)  751 87.0 1.4e-16
XP_016867216 (OMIM: 613141) PREDICTED: probable E3 ( 575)  487 61.0 7.2e-09
XP_016867215 (OMIM: 613141) PREDICTED: probable E3 ( 575)  487 61.0 7.2e-09
NP_001096066 (OMIM: 613141) probable E3 ubiquitin- ( 575)  487 61.0 7.2e-09
XP_016867214 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
XP_011514075 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
NP_001096064 (OMIM: 613141) probable E3 ubiquitin- ( 622)  487 61.1 7.6e-09
XP_011514076 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
XP_005250188 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
XP_005250189 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
XP_011514077 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
XP_016867212 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
NP_001096065 (OMIM: 613141) probable E3 ubiquitin- ( 622)  487 61.1 7.6e-09
XP_011514074 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
XP_016867213 (OMIM: 613141) PREDICTED: probable E3 ( 622)  487 61.1 7.6e-09
NP_065943 (OMIM: 613141) probable E3 ubiquitin-pro ( 622)  487 61.1 7.6e-09
NP_001287656 (OMIM: 616110) E3 ubiquitin-protein l ( 513)  424 54.8 4.9e-07
XP_006718546 (OMIM: 616110) PREDICTED: E3 ubiquiti ( 513)  424 54.8 4.9e-07
NP_055992 (OMIM: 616110) E3 ubiquitin-protein liga ( 619)  424 54.9 5.5e-07
NP_004407 (OMIM: 602582) E3 ubiquitin-protein liga ( 620)  409 53.4 1.5e-06
XP_011536311 (OMIM: 602582) PREDICTED: E3 ubiquiti ( 620)  409 53.4 1.5e-06
XP_016867217 (OMIM: 613141) PREDICTED: probable E3 ( 568)  336 46.2 0.00021


>>XP_011536324 (OMIM: 613142) PREDICTED: probable E3 ubi  (347 aa)
 initn: 2428 init1: 2428 opt: 2428  Z-score: 1311.5  bits: 251.1 E(85289): 2.6e-66
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
              250       260       270       280       290       300

              310       320       330       340       
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       :::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       

>>XP_005268760 (OMIM: 613142) PREDICTED: probable E3 ubi  (347 aa)
 initn: 2428 init1: 2428 opt: 2428  Z-score: 1311.5  bits: 251.1 E(85289): 2.6e-66
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
              250       260       270       280       290       300

              310       320       330       340       
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       :::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       

>>NP_001273175 (OMIM: 613142) probable E3 ubiquitin-prot  (347 aa)
 initn: 2428 init1: 2428 opt: 2428  Z-score: 1311.5  bits: 251.1 E(85289): 2.6e-66
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
              250       260       270       280       290       300

              310       320       330       340       
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       

>>NP_848597 (OMIM: 613142) probable E3 ubiquitin-protein  (347 aa)
 initn: 2428 init1: 2428 opt: 2428  Z-score: 1311.5  bits: 251.1 E(85289): 2.6e-66
Smith-Waterman score: 2428; 100.0% identity (100.0% similar) in 347 aa overlap (1-347:1-347)

               10        20        30        40        50        60
pF1KB6 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDIYVL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 QLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEMHRA
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 GPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTLEKC
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 RHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVI
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_848 QYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTT
              250       260       270       280       290       300

              310       320       330       340       
pF1KB6 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       :::::::::::::::::::::::::::::::::::::::::::::::
NP_848 GRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       

>>NP_001273174 (OMIM: 613142) probable E3 ubiquitin-prot  (350 aa)
 initn: 2394 init1: 2394 opt: 2394  Z-score: 1293.5  bits: 247.8 E(85289): 2.6e-65
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)

                  10        20        30        40        50       
pF1KB6    MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               :.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
              250       260       270       280       290       300

       300       310       320       330       340       
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       350

>>XP_005268754 (OMIM: 613142) PREDICTED: probable E3 ubi  (350 aa)
 initn: 2394 init1: 2394 opt: 2394  Z-score: 1293.5  bits: 247.8 E(85289): 2.6e-65
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)

                  10        20        30        40        50       
pF1KB6    MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               :.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
              250       260       270       280       290       300

       300       310       320       330       340       
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       350

>>XP_005268757 (OMIM: 613142) PREDICTED: probable E3 ubi  (350 aa)
 initn: 2394 init1: 2394 opt: 2394  Z-score: 1293.5  bits: 247.8 E(85289): 2.6e-65
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)

                  10        20        30        40        50       
pF1KB6    MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               :.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
              250       260       270       280       290       300

       300       310       320       330       340       
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       350

>>XP_005268755 (OMIM: 613142) PREDICTED: probable E3 ubi  (350 aa)
 initn: 2394 init1: 2394 opt: 2394  Z-score: 1293.5  bits: 247.8 E(85289): 2.6e-65
Smith-Waterman score: 2394; 99.7% identity (100.0% similar) in 342 aa overlap (6-347:9-350)

                  10        20        30        40        50       
pF1KB6    MSFVLSRMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               :.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPILSSSGSKMAACGGTCKNKVTVSKPVWDFLSKETPARLARLREEHRVSILIDGETSDI
               10        20        30        40        50        60

        60        70        80        90       100       110       
pF1KB6 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YVLQLSPQGPPPAPPNGLYLARKALKGLLKEAEKELKKAQRQGELMGCLALGGGGEHPEM
               70        80        90       100       110       120

       120       130       140       150       160       170       
pF1KB6 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 HRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQNAKTL
              130       140       150       160       170       180

       180       190       200       210       220       230       
pF1KB6 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 EKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGT
              190       200       210       220       230       240

       240       250       260       270       280       290       
pF1KB6 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTS
              250       260       270       280       290       300

       300       310       320       330       340       
pF1KB6 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
       ::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
              310       320       330       340       350

>>NP_612144 (OMIM: 613143) E3 ubiquitin-protein ligase D  (740 aa)
 initn: 742 init1: 532 opt: 751  Z-score: 418.8  bits: 87.0 E(85289): 1.4e-16
Smith-Waterman score: 751; 53.4% identity (71.6% similar) in 204 aa overlap (143-344:540-739)

            120       130       140       150       160       170  
pF1KB6 EHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPPRLREEAEEQESTCPICLGEIQ
                                     :::   .  .  :  ..... : ::.  :.
NP_612 GGMSSLAGKKLKEGHETPMDIDSDDSKAASPPLKGSVSSEASELDKKEKGICVICMDTIS
     510       520       530       540       550       560         

            180       190       200       210       220         230
pF1KB6 NAKTLEKCRHSFCEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRML--VSKDATLLLP
       : :.: ::.: ::  ::..:.. :  :: :   ::   ::::. : :.  ::.:.   ::
NP_612 NKKVLPKCKHEFCAPCINKAMSYKPICPTCQTSYGIQKGNQPE-GSMVFTVSRDS---LP
     570       580       590       600       610        620        

              240       250       260       270       280       290
pF1KB6 SYEKYGTIVIQYVFPPGVQGAEHPNPGVRYPGTTRVAYLPDCPEGNKVLTLFRKAFDQRL
       .::..::::: : .  :.:  :::::: ::::  :.:::::  :: ::: :. .::::.:
NP_612 GYESFGTIVITYSMKAGIQTEEHPNPGKRYPGIQRTAYLPDNKEGRKVLKLLYRAFDQKL
         630       640       650       660       670       680     

              300       310       320       330       340       
pF1KB6 TFTIGTSMTTGRPNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD
        ::.: : . :  .::::::::::::  :::...:::::.:: ::.:::.::::   
NP_612 IFTVGYSRVLGVSDVITWNDIHHKTSRFGGPEMYGYPDPSYLKRVKEELKAKGIE  
         690       700       710       720       730       740  

>>XP_016867216 (OMIM: 613141) PREDICTED: probable E3 ubi  (575 aa)
 initn: 476 init1: 319 opt: 487  Z-score: 280.2  bits: 61.0 E(85289): 7.2e-09
Smith-Waterman score: 512; 38.0% identity (55.3% similar) in 255 aa overlap (122-347:326-570)

             100       110       120       130       140       150 
pF1KB6 ELKKAQRQGELMGCLALGGGGEHPEMHRAGPPPLRAAPLLPPGARGLPPPPPPLPPPLPP
                                     : : :.   :     :  : : : :  .  
XP_016 SSTSGAVSASLPSGPSSSPGSVPATVPMQMPKPSRVQQALA----GATPKPEPEPEQVIK
         300       310       320       330           340       350 

              160                170               180             
pF1KB6 RLREEAE-EQESTCPICL---------GEIQNAKT--------LEKCRHSF---------
          :: .   .  : ::.         ... ..:.        : :: :.:         
XP_016 NYTEELKVPPDEDCIICMEKLSTASGYSDVTDSKAIGSLAVGHLTKCSHAFHLLCLLAMY
             360       370       380       390       400       410 

          190       200       210       220       230       240    
pF1KB6 CEGCITRALQVKKACPMCGRFYGQLVGNQPQNGRMLVSKDATLLLPSYEKYGTIVIQYVF
       :.:    .::    :: :  .::. .:.::: :.: : .   . ::..:  :::.: : .
XP_016 CNGNKDGSLQ----CPSCKTIYGEKTGTQPQ-GKMEVLR-FQMSLPGHEDCGTILIVYSI
             420           430        440        450       460     

          250       260         270       280       290       300  
pF1KB6 PPGVQGAEHPNPGVRYP--GTTRVAYLPDCPEGNKVLTLFRKAFDQRLTFTIGTSMTTGR
       : :.:: ::::::  .   :  :  ::::  .: ::: :.. :. .:: ::.::: :::.
XP_016 PHGIQGPEHPNPGKPFTARGFPRQCYLPDNAQGRKVLELLKVAWKRRLIFTVGTSSTTGE
         470       480       490       500       510       520     

            310       320       330       340            
pF1KB6 PNVITWNDIHHKTSCTGGPQLFGYPDPTYLTRVQEELRAKGITDD     
        ....::.:::::    .    :::::.::  :  :: :.:.:.:     
XP_016 TDTVVWNEIHHKTEMDRNITGHGYPDPNYLQNVLAELAAQGVTEDCLEQQ
         530       540       550       560       570     




347 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 22:39:00 2016 done: Fri Nov  4 22:39:01 2016
 Total Scan time: 10.040 Total Display time:  0.020

Function used was FASTA [36.3.4 Apr, 2011]
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