FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7626, 372 aa 1>>>pF1KB7626 372 - 372 aa - 372 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 8.6778+/-0.000829; mu= 5.1595+/- 0.050 mean_var=249.6288+/-49.626, 0's: 0 Z-trim(116.1): 7 B-trim: 0 in 0/54 Lambda= 0.081176 statistics sampled from 16668 (16675) to 16668 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.512), width: 16 Scan time: 2.890 The best scores are: opt bits E(32554) CCDS8630.1 YBX3 gene_id:8531|Hs108|chr12 ( 372) 2538 309.5 3.1e-84 CCDS44831.1 YBX3 gene_id:8531|Hs108|chr12 ( 303) 1313 165.9 4.1e-41 CCDS470.1 YBX1 gene_id:4904|Hs108|chr1 ( 324) 780 103.5 2.7e-22 CCDS11098.1 YBX2 gene_id:51087|Hs108|chr17 ( 364) 746 99.6 4.5e-21 >>CCDS8630.1 YBX3 gene_id:8531|Hs108|chr12 (372 aa) initn: 2538 init1: 2538 opt: 2538 Z-score: 1625.8 bits: 309.5 E(32554): 3.1e-84 Smith-Waterman score: 2538; 99.7% identity (100.0% similar) in 372 aa overlap (1-372:1-372) 10 20 30 40 50 60 pF1KB7 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 APAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: CCDS86 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY 190 200 210 220 230 240 250 260 270 280 290 300 pF1KB7 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR 250 260 270 280 290 300 310 320 330 340 350 360 pF1KB7 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS86 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE 310 320 330 340 350 360 370 pF1KB7 NPAPPTQQSSAE :::::::::::: CCDS86 NPAPPTQQSSAE 370 >>CCDS44831.1 YBX3 gene_id:8531|Hs108|chr12 (303 aa) initn: 2030 init1: 1248 opt: 1313 Z-score: 851.6 bits: 165.9 E(32554): 4.1e-41 Smith-Waterman score: 1896; 81.2% identity (81.5% similar) in 372 aa overlap (1-372:1-303) 10 20 30 40 50 60 pF1KB7 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 APAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ ::::::::::::::.::::::::::::::::::::::::::::::::::::::::::::: CCDS44 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG 130 140 150 160 170 180 190 200 210 220 230 240 pF1KB7 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY ::::::::::: CCDS44 YYGRRRGPPRN------------------------------------------------- 190 250 260 270 280 290 300 pF1KB7 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR :::::::::::::::::::::::::::::::::::::::: CCDS44 --------------------AGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR 200 210 220 230 310 320 330 340 350 360 pF1KB7 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS44 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE 240 250 260 270 280 290 370 pF1KB7 NPAPPTQQSSAE :::::::::::: CCDS44 NPAPPTQQSSAE 300 >>CCDS470.1 YBX1 gene_id:4904|Hs108|chr1 (324 aa) initn: 1013 init1: 609 opt: 780 Z-score: 513.9 bits: 103.5 E(32554): 2.7e-22 Smith-Waterman score: 1093; 57.7% identity (71.6% similar) in 338 aa overlap (41-372:10-324) 20 30 40 50 60 pF1KB7 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA : :: :: :: .: . :: .. :..: CCDS47 MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP 10 20 30 70 80 90 100 110 120 pF1KB7 AAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP .. . :: :: ..:::.::::::::::::::::::::::::::::::::::::::::: CCDS47 GGLTSAAPAG---GDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP 40 50 60 70 80 90 130 140 150 160 170 180 pF1KB7 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP :::::::::::::::::::::::::::::::: ::::.::.::::: .::: : ::::: CCDS47 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP 100 110 120 130 140 150 190 200 210 220 230 240 pF1KB7 PRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDR :::: . .. :: .. . : . : : ::: ::.::::::.. . . : CCDS47 PRNYQQNYQNSESGEKNEGSESAPEGQ-----AQQRRP-----YRRRRFPPYYMRRPYGR 160 170 180 190 200 250 260 270 280 290 300 pF1KB7 RSRVLPHPNRIQAGEIGEMKDGVPEGAQLQG-PVHRNPT--YRPRYRSRGPPRPRPAPAV : . : .: ::. : :. .:: :: ::..: ::::.: ::::: : CCDS47 RPQYSNPP--VQ-GEVMEGADN--QGAGEQGRPVRQNMYRGYRPRFR-RGPPRQRQPRED 210 220 230 240 250 310 320 330 340 350 360 pF1KB7 GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP-AP :. :::::: . .:: :: ::: .::::: :: : :::::.::.. :.:: :: CCDS47 GNEEDKENQGDETQGQQPPQRR-YRRNFNYRRR-RPENPKPQDGKETKAADPPAENSSAP 260 270 280 290 300 310 370 pF1KB7 PTQQSSAE ..:..:: CCDS47 EAEQGGAE 320 >>CCDS11098.1 YBX2 gene_id:51087|Hs108|chr17 (364 aa) initn: 659 init1: 590 opt: 746 Z-score: 491.7 bits: 99.6 E(32554): 4.5e-21 Smith-Waterman score: 843; 46.2% identity (64.3% similar) in 381 aa overlap (1-366:1-360) 10 20 30 40 50 pF1KB7 MSE---AGEATTTTTTTLPQAPTEAAAAAPQDPA--PKSPVGSGAPQAAAPAPAAHVAGN ::: :. ::.. ..:.: . . ..:.. :: :.. :.:. .:: .::: . . CCDS11 MSEVEAAAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSA 10 20 30 40 50 60 60 70 80 90 100 110 pF1KB7 PGGDAAPAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKED ::. . :. .::.... : : :. :.: ::: .::::::::::::::::::::::::: CCDS11 PGSRT-PGNPATAVSGTPAPPARSQ-ADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKED 70 80 90 100 110 120 130 140 150 160 170 pF1KB7 VFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRR :::::::::.:::::.:::::::::::::::::::::::.::::: ::::.::::: .:: CCDS11 VFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRR 120 130 140 150 160 170 180 190 200 210 220 230 pF1KB7 RYRRGYYGR--RRGPPRNYAGEEEEEGSG-SSEGFDPPATDRQFSGARNQLRRPQYRPQY . :: . : .:: : : :.: .:.: : : :: : :: . : CCDS11 KSRR-FIPRPPSVAPPPMVA-EIPSAGTGPGSKG--ERAED---SGQRP--RR--WCP-- 180 190 200 210 220 240 250 260 270 280 290 pF1KB7 RQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVP-EGAQLQGPVHRNPT-YRPR ::. . : : : . . :.. . : :. .: :: : :: . : .::: CCDS11 -----PPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPR 230 240 250 260 270 280 300 310 320 330 340 pF1KB7 YRSRGPPRPRPAPAV--GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRR---PRPPNAP :: :::: :.. :..: : .: ..: ..: .: ::: ::: : : .:: CCDS11 YRRPFRPRPRQQPTTEGGDGETKPSQGPADG-SRPEPQRPRNRPYFQRRRQQAPGPQQAP 290 300 310 320 330 350 360 370 pF1KB7 SQDGKEAKAGEAPTENPAPPTQQSSAE . : ::... : : CCDS11 GPRQPAAPETSAPVNSGDPTTTILE 340 350 360 372 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:08:54 2016 done: Mon Nov 7 04:08:54 2016 Total Scan time: 2.890 Total Display time: 0.000 Function used was FASTA [36.3.4 Apr, 2011]