Result of FASTA (ccds) for pFN21AB7626
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7626, 372 aa
  1>>>pF1KB7626 372 - 372 aa - 372 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6778+/-0.000829; mu= 5.1595+/- 0.050
 mean_var=249.6288+/-49.626, 0's: 0 Z-trim(116.1): 7  B-trim: 0 in 0/54
 Lambda= 0.081176
 statistics sampled from 16668 (16675) to 16668 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.785), E-opt: 0.2 (0.512), width:  16
 Scan time:  2.890

The best scores are:                                      opt bits E(32554)
CCDS8630.1 YBX3 gene_id:8531|Hs108|chr12           ( 372) 2538 309.5 3.1e-84
CCDS44831.1 YBX3 gene_id:8531|Hs108|chr12          ( 303) 1313 165.9 4.1e-41
CCDS470.1 YBX1 gene_id:4904|Hs108|chr1             ( 324)  780 103.5 2.7e-22
CCDS11098.1 YBX2 gene_id:51087|Hs108|chr17         ( 364)  746 99.6 4.5e-21


>>CCDS8630.1 YBX3 gene_id:8531|Hs108|chr12                (372 aa)
 initn: 2538 init1: 2538 opt: 2538  Z-score: 1625.8  bits: 309.5 E(32554): 3.1e-84
Smith-Waterman score: 2538; 99.7% identity (100.0% similar) in 372 aa overlap (1-372:1-372)

               10        20        30        40        50        60
pF1KB7 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 APAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS86 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB7 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE
              310       320       330       340       350       360

              370  
pF1KB7 NPAPPTQQSSAE
       ::::::::::::
CCDS86 NPAPPTQQSSAE
              370  

>>CCDS44831.1 YBX3 gene_id:8531|Hs108|chr12               (303 aa)
 initn: 2030 init1: 1248 opt: 1313  Z-score: 851.6  bits: 165.9 E(32554): 4.1e-41
Smith-Waterman score: 1896; 81.2% identity (81.5% similar) in 372 aa overlap (1-372:1-303)

               10        20        30        40        50        60
pF1KB7 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 MSEAGEATTTTTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPAPAAHVAGNPGGDA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 APAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ
       ::::::::::::::.:::::::::::::::::::::::::::::::::::::::::::::
CCDS44 APAATGTAAAASLATAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQ
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 TAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 YYGRRRGPPRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPY
       :::::::::::                                                 
CCDS44 YYGRRRGPPRN-------------------------------------------------
              190                                                  

              250       260       270       280       290       300
pF1KB7 HVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR
                           ::::::::::::::::::::::::::::::::::::::::
CCDS44 --------------------AGEIGEMKDGVPEGAQLQGPVHRNPTYRPRYRSRGPPRPR
                                 200       210       220       230 

              310       320       330       340       350       360
pF1KB7 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS44 PAPAVGEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTE
             240       250       260       270       280       290 

              370  
pF1KB7 NPAPPTQQSSAE
       ::::::::::::
CCDS44 NPAPPTQQSSAE
             300   

>>CCDS470.1 YBX1 gene_id:4904|Hs108|chr1                  (324 aa)
 initn: 1013 init1: 609 opt: 780  Z-score: 513.9  bits: 103.5 E(32554): 2.7e-22
Smith-Waterman score: 1093; 57.7% identity (71.6% similar) in 338 aa overlap (41-372:10-324)

               20        30        40         50         60        
pF1KB7 TTTTLPQAPTEAAAAAPQDPAPKSPVGSGAPQAAAPA-PAAHVAGN-PGGDAAPAATGTA
                                     : :: :: ::  .: . ::  .. :..:  
CCDS47                      MSSEAETQQPPAAPPAAPALSAADTKPGTTGSGAGSGGP
                                    10        20        30         

       70        80        90       100       110       120        
pF1KB7 AAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
       .. . :: ::   ..:::.:::::::::::::::::::::::::::::::::::::::::
CCDS47 GGLTSAAPAG---GDKKVIATKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNP
      40           50        60        70        80        90      

      130       140       150       160       170       180        
pF1KB7 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRRRYRRGYYGRRRGP
       :::::::::::::::::::::::::::::::: ::::.::.::::: .:::  : :::::
CCDS47 RKYLRSVGDGETVEFDVVEGEKGAEAANVTGPGGVPVQGSKYAADRNHYRR--YPRRRGP
        100       110       120       130       140         150    

      190       200       210       220       230       240        
pF1KB7 PRNYAGEEEEEGSGSSEGFDPPATDRQFSGARNQLRRPQYRPQYRQRRFPPYHVGQTFDR
       ::::  . ..  :: ..  .  : . :      : :::     ::.::::::.. . . :
CCDS47 PRNYQQNYQNSESGEKNEGSESAPEGQ-----AQQRRP-----YRRRRFPPYYMRRPYGR
          160       170       180                 190       200    

      250       260       270        280         290       300     
pF1KB7 RSRVLPHPNRIQAGEIGEMKDGVPEGAQLQG-PVHRNPT--YRPRYRSRGPPRPRPAPAV
       : .    :  .: ::. :  :.  .::  :: ::..:    ::::.: ::::: :     
CCDS47 RPQYSNPP--VQ-GEVMEGADN--QGAGEQGRPVRQNMYRGYRPRFR-RGPPRQRQPRED
          210          220         230       240        250        

         310       320       330       340       350       360     
pF1KB7 GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRRPRPPNAPSQDGKEAKAGEAPTENP-AP
       :. ::::::   .  .::  :: ::: .::::: :: :   :::::.::.. :.::  ::
CCDS47 GNEEDKENQGDETQGQQPPQRR-YRRNFNYRRR-RPENPKPQDGKETKAADPPAENSSAP
      260       270       280        290        300       310      

          370  
pF1KB7 PTQQSSAE
        ..:..::
CCDS47 EAEQGGAE
        320    

>>CCDS11098.1 YBX2 gene_id:51087|Hs108|chr17              (364 aa)
 initn: 659 init1: 590 opt: 746  Z-score: 491.7  bits: 99.6 E(32554): 4.5e-21
Smith-Waterman score: 843; 46.2% identity (64.3% similar) in 381 aa overlap (1-366:1-360)

                  10        20        30          40        50     
pF1KB7 MSE---AGEATTTTTTTLPQAPTEAAAAAPQDPA--PKSPVGSGAPQAAAPAPAAHVAGN
       :::   :. ::.. ..:.: . . ..:..   ::  :..  :.:.  .:: .::: . . 
CCDS11 MSEVEAAAGATAVPAATVPATAAGVVAVVVPVPAGEPQKGGGAGGGGGAASGPAAGTPSA
               10        20        30        40        50        60

          60        70        80        90       100       110     
pF1KB7 PGGDAAPAATGTAAAASLAAAAGSEDAEKKVLATKVLGTVKWFNVRNGYGFINRNDTKED
       ::. . :.  .::.... :  : :. :.: ::: .:::::::::::::::::::::::::
CCDS11 PGSRT-PGNPATAVSGTPAPPARSQ-ADKPVLAIQVLGTVKWFNVRNGYGFINRNDTKED
                70        80         90       100       110        

         120       130       140       150       160       170     
pF1KB7 VFVHQTAIKKNNPRKYLRSVGDGETVEFDVVEGEKGAEAANVTGPDGVPVEGSRYAADRR
       :::::::::.:::::.:::::::::::::::::::::::.::::: ::::.::::: .::
CCDS11 VFVHQTAIKRNNPRKFLRSVGDGETVEFDVVEGEKGAEATNVTGPGGVPVKGSRYAPNRR
      120       130       140       150       160       170        

         180         190       200        210       220       230  
pF1KB7 RYRRGYYGR--RRGPPRNYAGEEEEEGSG-SSEGFDPPATDRQFSGARNQLRRPQYRPQY
       . :: .  :    .::   : :    :.: .:.:    : :   :: :   ::  . :  
CCDS11 KSRR-FIPRPPSVAPPPMVA-EIPSAGTGPGSKG--ERAED---SGQRP--RR--WCP--
      180        190        200       210            220           

            240       250       260       270        280        290
pF1KB7 RQRRFPPYHVGQTFDRRSRVLPHPNRIQAGEIGEMKDGVP-EGAQLQGPVHRNPT-YRPR
            ::.   . : :  :   . . :.. .  : :. .: :: : ::  .  :  .:::
CCDS11 -----PPFFYRRRFVRGPRPPNQQQPIEGTDRVEPKETAPLEGHQQQGDERVPPPRFRPR
              230       240       250       260       270       280

              300         310       320       330          340     
pF1KB7 YRSRGPPRPRPAPAV--GEAEDKENQQATSGPNQPSVRRGYRRPYNYRRR---PRPPNAP
       ::    ::::  :..  :..: : .:  ..: ..:  .:   :::  :::   : : .::
CCDS11 YRRPFRPRPRQQPTTEGGDGETKPSQGPADG-SRPEPQRPRNRPYFQRRRQQAPGPQQAP
              290       300       310        320       330         

         350       360       370  
pF1KB7 SQDGKEAKAGEAPTENPAPPTQQSSAE
       .     :    ::...  : :      
CCDS11 GPRQPAAPETSAPVNSGDPTTTILE  
     340       350       360      




372 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:08:54 2016 done: Mon Nov  7 04:08:54 2016
 Total Scan time:  2.890 Total Display time:  0.000

Function used was FASTA [36.3.4 Apr, 2011]
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