FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KE6103, 135 aa
  1>>>pF1KE6103 135 - 135 aa - 135 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 4.5884+/-0.000615; mu= 14.9135+/- 0.037
 mean_var=55.3231+/-10.954, 0's: 0 Z-trim(110.3): 11  B-trim: 2 in 1/53
 Lambda= 0.172433
 statistics sampled from 11486 (11490) to 11486 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.754), E-opt: 0.2 (0.353), width:  16
 Scan time:  1.500

The best scores are:                                      opt bits E(32554)
CCDS34040.1 CISD2 gene_id:493856|Hs108|chr4        ( 135)  894 229.6 4.6e-61
CCDS7251.1 CISD1 gene_id:55847|Hs108|chr10         ( 108)  380 101.6 1.2e-22


>>CCDS34040.1 CISD2 gene_id:493856|Hs108|chr4             (135 aa)
 initn: 894 init1: 894 opt: 894  Z-score: 1209.8  bits: 229.6 E(32554): 4.6e-61
Smith-Waterman score: 894; 100.0% identity (100.0% similar) in 135 aa overlap (1-135:1-135)

               10        20        30        40        50        60
pF1KE6 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KE6 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS34 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL
               70        80        90       100       110       120

              130     
pF1KE6 TGDNVGPLILKKKEV
       :::::::::::::::
CCDS34 TGDNVGPLILKKKEV
              130     

>>CCDS7251.1 CISD1 gene_id:55847|Hs108|chr10              (108 aa)
 initn: 340 init1: 252 opt: 380  Z-score: 520.1  bits: 101.6 E(32554): 1.2e-22
Smith-Waterman score: 380; 54.1% identity (78.0% similar) in 109 aa overlap (26-134:2-107)

               10        20        30        40        50        60
pF1KE6 MVLESVARIVKVQLPAYLKRLPVPESITGFARLTVSEWLRLLPFLGVLALLGYLAVRPFL
                                :.:. . . : ::.  . . .  : .:::: . : 
CCDS72                         MSLTSSSSVRV-EWIAAVTIAAGTAAIGYLAYKRFY
                                       10         20        30     

               70        80        90       100       110       120
pF1KE6 PKKKQQKDSLINLKIQKENPKVVNEINIEDLCLTKAAYCRCWRSKTFPACDGSHNKHNEL
        : ...: ..:::.:::.:::.:. ...:::   ::.:::::::: :: :::.:.:::: 
CCDS72 VKDHRNK-AMINLHIQKDNPKIVHAFDMEDLG-DKAVYCRCWRSKKFPFCDGAHTKHNEE
          40         50        60         70        80        90   

              130     
pF1KE6 TGDNVGPLILKKKEV
       :::::::::.:::: 
CCDS72 TGDNVGPLIIKKKET
           100        




135 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Tue Nov  8 09:28:52 2016 done: Tue Nov  8 09:28:52 2016
 Total Scan time:  1.500 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]