(Circular) (Six-base) MAPSORT of: pFN21AE0163.seq Check: 15 from: 1 to: 5044 pFN21AE0163 5044 bp With 182 enzymes: SgfI * October 20, 2009 10:45 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 2854 278 Size: 53 83 186 936 1318 2468 Fragments arranged by size: 2468 1318 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2387 1937 Size: 450 4594 Acc65I G'GTAC_C Cuts at: 2112 2365 2112 Size: 253 4791 AclI AA'CG_TT Cuts at: 1563 3171 3544 1563 Size: 1608 373 3063 Fragments arranged by size: 3063 1608 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3107 4491 4759 1632 Size: 1475 1384 268 1917 Fragments arranged by size: 1917 1475 1384 268 AfeI AGC'GCT Cuts at: 2270 2270 Size: 5044 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 4847 AflIII A'CryG_T Cuts at: 1203 2230 3943 4920 1203 Size: 1027 1713 977 1327 Fragments arranged by size: 1713 1327 1027 977 AgeI A'CCGG_T Cuts at: 3875 3875 Size: 5044 AhdI GACnn_n'nnGTC Cuts at: 3773 3773 Size: 5044 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5044 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5044 AlwNI CAG_nnn'CTG Cuts at: 2787 4359 2787 Size: 1572 3472 ApaLI G'TGCA_C Cuts at: 2133 3101 4257 2133 Size: 968 1156 2920 Fragments arranged by size: 2920 1156 968 ApoI r'AATT_y Cuts at: 1493 2249 2353 2579 2731 4840 1493 Size: 756 104 226 152 2109 1697 Fragments arranged by size: 2109 1697 756 226 152 104 AseI AT'TA_AT Cuts at: 160 1032 3598 160 Size: 872 2566 1606 Fragments arranged by size: 2566 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5044 AvaI C'yCGr_G Cuts at: 1870 1943 2369 1870 Size: 73 426 4545 Fragments arranged by size: 4545 426 73 BamHI G'GATC_C Cuts at: 2374 2741 2374 Size: 367 4677 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2112 2365 3820 618 Size: 325 217 627 325 253 1455 1842 Fragments arranged by size: 1842 1455 627 325 325 253 217 BanII G_rGCy'C Cuts at: 1391 2170 2363 1391 Size: 779 193 4072 Fragments arranged by size: 4072 779 193 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4073 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 2018 2052 3235 3269 1903 Size: 34 81 34 1183 34 3678 Fragments arranged by size: 3678 1183 81 34 34 34 BciVI GTATCCnnnnn_n' Cuts at: 2936 4146 2936 Size: 1210 3834 BclI T'GATC_A Cuts at: 1548 1548 Size: 5044 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2009 3655 136 Size: 107 122 71 631 605 337 1646 1525 Fragments arranged by size: 1646 1525 631 605 337 122 107 71 BglII A'GATC_T Cuts at: 5039 5039 Size: 5044 BlpI GC'TnA_GC Cuts at: 2461 2461 Size: 5044 Bme1580I G_kGCm'C Cuts at: 1790 2137 3105 4261 1790 Size: 347 968 1156 2573 Fragments arranged by size: 2573 1156 968 347 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5044 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2775 3733 442 Size: 416 53 83 399 24 1358 958 1753 Fragments arranged by size: 1753 1358 958 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5044 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2343 3704 1239 Size: 1104 1361 2579 Fragments arranged by size: 2579 1361 1104 Bpu10I CC'TnA_GC Cuts at: 2066 2066 Size: 5044 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2288 3169 4034 4332 2288 Size: 881 865 298 3000 Fragments arranged by size: 3000 881 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2306 3707 882 Size: 617 807 1401 2219 Fragments arranged by size: 2219 1401 807 617 BsaAI yAC'GTr Cuts at: 493 1204 2835 493 Size: 711 1631 2702 Fragments arranged by size: 2702 1631 711 BsaBI GATnn'nnATC Cuts at: 5038 5038 Size: 5044 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 2851 3233 3868 275 Size: 53 83 186 936 1318 382 635 1451 Fragments arranged by size: 1451 1318 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2223 3477 3875 4149 4296 4707 2223 Size: 1254 398 274 147 411 2560 Fragments arranged by size: 2560 1254 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 4819 Fragments arranged by size: 4819 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2294 1186 Size: 1108 3936 BseYI C'CCAG_C Cuts at: 2334 4247 4743 2334 Size: 1913 496 2635 Fragments arranged by size: 2635 1913 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2182 1163 Size: 573 446 4025 Fragments arranged by size: 4025 573 446 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2083 2494 3255 4283 1540 Size: 275 186 82 411 761 1028 2301 Fragments arranged by size: 2301 1028 761 411 275 186 82 BsiHKAI G_wGCw'C Cuts at: 2137 3105 3190 4261 2137 Size: 968 85 1071 2920 Fragments arranged by size: 2920 1071 968 85 BsmI GAATG_Cn' Cuts at: 2555 2648 2555 Size: 93 4951 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2137 2170 2363 3105 3190 4261 1391 Size: 399 347 33 193 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 347 193 85 33 BspEI T'CCGG_A Cuts at: 2223 4707 2223 Size: 2484 2560 BspHI T'CATG_A Cuts at: 2933 4663 2933 Size: 1730 3314 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2399 844 Size: 1555 3489 BsrBI CCG'CTC Cuts at: 1394 1823 2931 1394 Size: 429 1108 3507 Fragments arranged by size: 3507 1108 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3539 3713 65 Size: 1183 2291 174 1396 Fragments arranged by size: 2291 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2078 3688 3875 1700 Size: 110 268 1610 187 2869 Fragments arranged by size: 2869 1610 268 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5044 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5044 BssSI C'ACGA_G Cuts at: 3104 4116 3104 Size: 1012 4032 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5044 BstBI TT'CG_AA Cuts at: 3848 3848 Size: 5044 BstEII G'GTnAC_C Cuts at: 1184 2143 1184 Size: 959 4085 BstXI CCAn_nnnn'nTGG Cuts at: 2321 2321 Size: 5044 BstYI r'GATC_y Cuts at: 1972 2374 2741 3126 3143 4595 4681 4693 5039 Size: 402 367 385 17 1452 86 12 346 Cuts at: 5039 1972 Size: 1977 Fragments arranged by size: 1977 1452 402 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2014 2014 Size: 5044 BtgI C'CryG_G Cuts at: 513 1065 2004 2100 513 Size: 552 939 96 3457 Fragments arranged by size: 3457 939 552 96 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4305 Fragments arranged by size: 4305 683 56 BtsI GCAGTG_nn' Cuts at: 2560 3354 3374 2560 Size: 794 20 4230 Fragments arranged by size: 4230 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5044 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5009 DraI TTT'AAA Cuts at: 2348 2348 Size: 5044 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4051 809 Size: 507 2735 1802 Fragments arranged by size: 2735 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2073 2080 2491 Size: 54 1425 50 275 18 243 7 411 Cuts at: 2491 3380 5009 8 Size: 889 1629 43 Fragments arranged by size: 1629 1425 889 411 275 243 54 50 43 18 7 EagI C'GGCC_G Cuts at: 1537 1812 2080 2491 1537 Size: 275 268 411 4090 Fragments arranged by size: 4090 411 275 268 EarI CTCTTCn'nnn_ Cuts at: 1353 2974 1353 Size: 1621 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3631 4005 4151 387 Size: 1064 138 2042 374 146 1280 Fragments arranged by size: 2042 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2343 3107 3704 4491 4759 1239 Size: 393 711 764 597 787 268 1524 Fragments arranged by size: 1524 787 764 711 597 393 268 EcoNI CCTnn'n_nnAGG Cuts at: 2120 2243 2120 Size: 123 4921 EcoO109I rG'GnC_Cy Cuts at: 2019 2019 Size: 5044 EcoRI G'AATT_C Cuts at: 2353 2731 2353 Size: 378 4666 FspI TGC'GCA Cuts at: 3550 3550 Size: 5044 HaeII r_GCGC'y Cuts at: 1678 2272 4191 1678 Size: 594 1919 2531 Fragments arranged by size: 2531 1919 594 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 3685 3717 3759 3791 1373 Size: 32 135 32 2113 32 42 32 2626 Fragments arranged by size: 2626 2113 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2388 2634 669 Size: 988 281 450 246 3079 Fragments arranged by size: 3079 988 450 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5044 HpaI GTT'AAC Cuts at: 2634 2634 Size: 5044 KpnI G_GTAC'C Cuts at: 2116 2369 2116 Size: 253 4791 MfeI C'AATT_G Cuts at: 2643 2643 Size: 5044 MluI A'CGCG_T Cuts at: 4920 4920 Size: 5044 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4158 4342 1305 Size: 2853 184 2007 Fragments arranged by size: 2853 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3222 Fragments arranged by size: 3222 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 3002 3361 3520 518 Size: 648 1836 359 159 2042 Fragments arranged by size: 2042 1836 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2102 2460 3137 4285 4530 1606 Size: 496 358 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 496 358 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3553 Fragments arranged by size: 3553 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5044 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5044 NotI GC'GGCC_GC Cuts at: 2491 2491 Size: 5044 NruI TCG'CGA Cuts at: 2094 2094 Size: 5044 NspI r_CATG'y Cuts at: 1132 1229 2234 2402 3947 1132 Size: 97 1005 168 1545 2229 Fragments arranged by size: 2229 1545 1005 168 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5044 PciI A'CATG_T Cuts at: 2230 3943 2230 Size: 1713 3331 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5044 PmeI GTTT'AAAC Cuts at: 2348 2348 Size: 5044 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3113 3145 4626 4658 3113 Size: 32 1481 32 3499 Fragments arranged by size: 3499 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2019 2019 Size: 5044 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5044 PsiI TTA'TAA Cuts at: 2614 2614 Size: 5044 PstI C_TGCA'G Cuts at: 830 2396 830 Size: 1566 3478 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5044 SacII CC_GC'GG Cuts at: 2103 2103 Size: 5044 SalI G'TCGA_C Cuts at: 1936 2386 1936 Size: 450 4594 SanDI GG'GwC_CC Cuts at: 2019 2019 Size: 5044 SbfI CC_TGCA'GG Cuts at: 2396 2396 Size: 5044 ScaI AGT'ACT Cuts at: 3292 5004 3292 Size: 1712 3332 SfcI C'TryA_G Cuts at: 826 1045 2392 3527 4208 4399 826 Size: 219 1347 1135 681 191 1471 Fragments arranged by size: 1471 1347 1135 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5044 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5044 SmaI CCC'GGG Cuts at: 1872 2371 1872 Size: 499 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2303 3148 4049 4311 820 Size: 197 926 360 845 901 262 1553 Fragments arranged by size: 1553 926 901 845 360 262 197 SnaBI TAC'GTA Cuts at: 493 2835 493 Size: 2342 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5044 SphI G_CATG'C Cuts at: 1132 2402 1132 Size: 1270 3774 SspI AAT'ATT Cuts at: 5 52 2968 5 Size: 47 2916 2081 Fragments arranged by size: 2916 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5044 StyI C'CwwG_G Cuts at: 513 1065 2004 2483 513 Size: 552 939 479 3074 Fragments arranged by size: 3074 939 552 479 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3071 3088 3241 3426 3871 325 Size: 1255 1491 17 153 185 445 1498 Fragments arranged by size: 1498 1491 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3290 5002 96 Size: 274 80 33 51 1443 1313 1712 138 Fragments arranged by size: 1712 1443 1313 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5004 5036 5004 Size: 32 5012 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5044 XbaI T'CTAG_A Cuts at: 2380 2380 Size: 5044 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5044 XmaI C'CCGG_G Cuts at: 1870 2369 1870 Size: 499 4545 XmnI GAAnn'nnTTC Cuts at: 2126 3173 2126 Size: 1047 3997 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 2852 276 Size: 53 83 186 936 1318 2468 Fragments arranged by size: 2468 1318 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NruI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI SacII SalI SanDI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstZ17I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NsiI PacI PfoI PmlI PspOMI PspXI PsrI PvuII RsrII SacI SapI SexAI SfiI SfoI SrfI SwaI XcmI