FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8907, 239 aa
  1>>>pF1KB8907 239 - 239 aa - 239 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.6367+/-0.000256; mu= 14.1064+/- 0.016
 mean_var=88.5760+/-17.832, 0's: 0 Z-trim(121.6): 4  B-trim: 0 in 0/55
 Lambda= 0.136275
 statistics sampled from 38506 (38511) to 38506 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.796), E-opt: 0.2 (0.452), width:  16
 Scan time:  7.700

The best scores are:                                      opt bits E(85289)
NP_001013633 (OMIM: 616129) leucine rich adaptor p ( 239) 1601 323.7 1.8e-88
NP_981948 (OMIM: 616130) leucine rich adaptor prot ( 228)  282 64.4   2e-10


>>NP_001013633 (OMIM: 616129) leucine rich adaptor prote  (239 aa)
 initn: 1601 init1: 1601 opt: 1601  Z-score: 1709.5  bits: 323.7 E(85289): 1.8e-88
Smith-Waterman score: 1601; 100.0% identity (100.0% similar) in 239 aa overlap (1-239:1-239)

               10        20        30        40        50        60
pF1KB8 MEGTVESQTPDLRDVEGKVGRKTPEGLLRGLRGECELGTSGALLLPGASSTGHDLGDKIM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MEGTVESQTPDLRDVEGKVGRKTPEGLLRGLRGECELGTSGALLLPGASSTGHDLGDKIM
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB8 ALKMELAYLRAIDVKILQQLVTLNEGIEAVRWLLEERGTLTSHCSSLTSSQYSLTGGSPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALKMELAYLRAIDVKILQQLVTLNEGIEAVRWLLEERGTLTSHCSSLTSSQYSLTGGSPG
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB8 RSRRGSWDSLPDTSTTDRLDSVSIGSFLDTVAPSELDEQGPPGAPRSEMDWAKVIAGGER
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RSRRGSWDSLPDTSTTDRLDSVSIGSFLDTVAPSELDEQGPPGAPRSEMDWAKVIAGGER
              130       140       150       160       170       180

              190       200       210       220       230         
pF1KB8 ARTEVDVAATRLGSLRAVWKPPGERLQGGPPESPEDESAKLGFEAHWFWEQCQDDVTFL
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ARTEVDVAATRLGSLRAVWKPPGERLQGGPPESPEDESAKLGFEAHWFWEQCQDDVTFL
              190       200       210       220       230         

>>NP_981948 (OMIM: 616130) leucine rich adaptor protein   (228 aa)
 initn: 391 init1: 186 opt: 282  Z-score: 308.3  bits: 64.4 E(85289): 2e-10
Smith-Waterman score: 329; 37.3% identity (61.1% similar) in 193 aa overlap (10-161:7-196)

               10        20        30                              
pF1KB8 MEGTVESQTPDLRDVEGKVGRKTPEGLLRGLRGE------------------------CE
                :::::.: :.:::.::.:.:.::::                        : 
NP_981    MEDSPLPDLRDIELKLGRKVPESLVRSLRGEEPVPRERDRDPCGGSGGGGGGGGGCS
                  10        20        30        40        50       

         40        50                         60        70         
pF1KB8 LGTSGALLLPGASST-------GHDLGD----------KIMALKMELAYLRAIDVKILQQ
        ..:   . :. ::.       :   :.          :.  :..:.. ::: ::....:
NP_981 SSSSYCSFPPSLSSSSSSSPTSGSPRGSHSSALERLETKLHLLRQEMVNLRATDVRLMRQ
        60        70        80        90       100       110       

      80        90       100       110       120       130         
pF1KB8 LVTLNEGIEAVRWLLEERGTLTSHCSSLTSSQYSLTGGSPGRSRRGSWDSLPDTSTTDRL
       :...::.::...:..::..:.::. :::..:  ::   : . : :::..:: : :  : :
NP_981 LLVINESIESIKWMIEEKATITSRGSSLSGSLCSLLE-SQSTSLRGSYNSLHDGS--DGL
       120       130       140       150        160       170      

     140       150       160       170       180       190         
pF1KB8 DSVSIGSFLDTVAPSELDEQGPPGAPRSEMDWAKVIAGGERARTEVDVAATRLGSLRAVW
       :..:.::.:::.: .   .: :                                      
NP_981 DGISVGSYLDTLADDVPGHQTPSDLDQFSDSSLIEDSQALHKRPKLDSEYYCFG      
          180       190       200       210       220              




239 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:46:31 2016 done: Sat Nov  5 00:46:33 2016
 Total Scan time:  7.700 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]