Result of FASTA (omim) for
pFN21AB6880
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6880, 201 aa
1>>>pF1KB6880 201 - 201 aa - 201 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 5.3777+/-0.000282; mu= 13.7420+/- 0.018
mean_var=76.4595+/-15.113, 0's: 0 Z-trim(119.4): 14 B-trim: 71 in 1/56
Lambda= 0.146676
statistics sampled from 33430 (33444) to 33430 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.759), E-opt: 0.2 (0.392), width: 16
Scan time: 6.000
The best scores are: opt bits E(85289)
NP_001308349 (OMIM: 602843) rho GDP-dissociation i ( 201) 1348 293.8 1.3e-79
NP_001308351 (OMIM: 602843) rho GDP-dissociation i ( 201) 1348 293.8 1.3e-79
NP_001308350 (OMIM: 602843) rho GDP-dissociation i ( 201) 1348 293.8 1.3e-79
NP_001166 (OMIM: 602843) rho GDP-dissociation inhi ( 201) 1348 293.8 1.3e-79
NP_001308352 (OMIM: 602843) rho GDP-dissociation i ( 201) 1348 293.8 1.3e-79
NP_001172006 (OMIM: 601925,615244) rho GDP-dissoci ( 204) 938 207.0 1.7e-53
NP_004300 (OMIM: 601925,615244) rho GDP-dissociati ( 204) 938 207.0 1.7e-53
NP_001167 (OMIM: 602844) rho GDP-dissociation inhi ( 225) 763 170.0 2.5e-42
NP_001288169 (OMIM: 601925,615244) rho GDP-dissoci ( 235) 738 164.8 1e-40
NP_001288170 (OMIM: 601925,615244) rho GDP-dissoci ( 235) 738 164.8 1e-40
NP_001288172 (OMIM: 601925,615244) rho GDP-dissoci ( 249) 623 140.4 2.3e-33
XP_011521876 (OMIM: 601925,615244) PREDICTED: rho ( 249) 623 140.4 2.3e-33
NP_001288171 (OMIM: 601925,615244) rho GDP-dissoci ( 337) 588 133.1 4.9e-31
NP_001172007 (OMIM: 601925,615244) rho GDP-dissoci ( 160) 567 128.5 5.9e-30
>>NP_001308349 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 1348 init1: 1348 opt: 1348 Z-score: 1550.6 bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
130 140 150 160 170 180
190 200
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
:::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
190 200
>>NP_001308351 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 1348 init1: 1348 opt: 1348 Z-score: 1550.6 bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
130 140 150 160 170 180
190 200
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
:::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
190 200
>>NP_001308350 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 1348 init1: 1348 opt: 1348 Z-score: 1550.6 bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
130 140 150 160 170 180
190 200
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
:::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
190 200
>>NP_001166 (OMIM: 602843) rho GDP-dissociation inhibito (201 aa)
initn: 1348 init1: 1348 opt: 1348 Z-score: 1550.6 bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
130 140 150 160 170 180
190 200
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
:::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
190 200
>>NP_001308352 (OMIM: 602843) rho GDP-dissociation inhib (201 aa)
initn: 1348 init1: 1348 opt: 1348 Z-score: 1550.6 bits: 293.8 E(85289): 1.3e-79
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)
10 20 30 40 50 60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
130 140 150 160 170 180
190 200
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
:::::::::::::::::::::
NP_001 DDKQDHLSWEWNLSIKKEWTE
190 200
>>NP_001172006 (OMIM: 601925,615244) rho GDP-dissociatio (204 aa)
initn: 958 init1: 925 opt: 938 Z-score: 1081.6 bits: 207.0 E(85289): 1.7e-53
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-201:1-204)
10 20 30 40 50
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_001 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.: :
NP_001 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
120 130 140 150 160 170
180 190 200
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
: :::::: :::::::::.:::.: .
NP_001 SRFTDDDKTDHLSWEWNLTIKKDWKD
180 190 200
>>NP_004300 (OMIM: 601925,615244) rho GDP-dissociation i (204 aa)
initn: 958 init1: 925 opt: 938 Z-score: 1081.6 bits: 207.0 E(85289): 1.7e-53
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-201:1-204)
10 20 30 40 50
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_004 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_004 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.: :
NP_004 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
120 130 140 150 160 170
180 190 200
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
: :::::: :::::::::.:::.: .
NP_004 SRFTDDDKTDHLSWEWNLTIKKDWKD
180 190 200
>>NP_001167 (OMIM: 602844) rho GDP-dissociation inhibito (225 aa)
initn: 757 init1: 736 opt: 763 Z-score: 880.9 bits: 170.0 E(85289): 2.5e-42
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (3-201:31-225)
10 20 30
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
: .: : :.: :. . .:. : .:::
NP_001 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
10 20 30 40 50
40 50 60 70 80 90
pF1KB6 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
:....: ::.:: :::..::: : ..::. ::: ::::::. :.::::..:::::::
NP_001 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
60 70 80 90 100 110
100 110 120 130 140 150
pF1KB6 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
.:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...::::::: .:
NP_001 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
120 130 140 150 160 170
160 170 180 190 200
pF1KB6 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
:::.:::::::.: :.:: : :.:::::. ::::::.: : ..: .
NP_001 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
180 190 200 210 220
>>NP_001288169 (OMIM: 601925,615244) rho GDP-dissociatio (235 aa)
initn: 758 init1: 725 opt: 738 Z-score: 852.0 bits: 164.8 E(85289): 1e-40
Smith-Waterman score: 738; 64.2% identity (84.4% similar) in 173 aa overlap (1-168:1-171)
10 20 30 40 50
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_001 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::: ..
NP_001 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPG
120 130 140 150 160 170
180 190 200
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
NP_001 FRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
180 190 200 210 220 230
>>NP_001288170 (OMIM: 601925,615244) rho GDP-dissociatio (235 aa)
initn: 758 init1: 725 opt: 738 Z-score: 852.0 bits: 164.8 E(85289): 1e-40
Smith-Waterman score: 738; 64.2% identity (84.4% similar) in 173 aa overlap (1-168:1-171)
10 20 30 40 50
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
:.:. : . . :...:: ..::::: :::..:.::.::::::: :::..:::
NP_001 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
10 20 30 40 50
60 70 80 90 100 110
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
: .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
NP_001 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
::.::::.::.::::: :::.::. .:::::::: ::::::::::::::: ..
NP_001 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPG
120 130 140 150 160 170
180 190 200
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
NP_001 FRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
180 190 200 210 220 230
201 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 00:24:40 2016 done: Sat Nov 5 00:24:41 2016
Total Scan time: 6.000 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]