FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6880, 201 aa
  1>>>pF1KB6880 201 - 201 aa - 201 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.4628+/-0.000643; mu= 13.1851+/- 0.039
 mean_var=74.9748+/-14.411, 0's: 0 Z-trim(112.0): 8  B-trim: 4 in 1/53
 Lambda= 0.148121
 statistics sampled from 12788 (12793) to 12788 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.764), E-opt: 0.2 (0.393), width:  16
 Scan time:  2.250

The best scores are:                                      opt bits E(32554)
CCDS8671.1 ARHGDIB gene_id:397|Hs108|chr12         ( 201) 1348 296.5 7.1e-81
CCDS11788.1 ARHGDIA gene_id:396|Hs108|chr17        ( 204)  938 208.9 1.7e-54
CCDS10404.1 ARHGDIG gene_id:398|Hs108|chr16        ( 225)  763 171.6 3.4e-43
CCDS77133.1 ARHGDIA gene_id:396|Hs108|chr17        ( 235)  738 166.2 1.4e-41
CCDS58609.1 ARHGDIA gene_id:396|Hs108|chr17        ( 160)  567 129.6   1e-30


>>CCDS8671.1 ARHGDIB gene_id:397|Hs108|chr12              (201 aa)
 initn: 1348 init1: 1348 opt: 1348  Z-score: 1565.4  bits: 296.5 E(32554): 7.1e-81
Smith-Waterman score: 1348; 100.0% identity (100.0% similar) in 201 aa overlap (1-201:1-201)

               10        20        30        40        50        60
pF1KB6 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGDGPVVT
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 DPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKVNRDIV
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS86 SGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNKSFFTD
              130       140       150       160       170       180

              190       200 
pF1KB6 DDKQDHLSWEWNLSIKKEWTE
       :::::::::::::::::::::
CCDS86 DDKQDHLSWEWNLSIKKEWTE
              190       200 

>>CCDS11788.1 ARHGDIA gene_id:396|Hs108|chr17             (204 aa)
 initn: 958 init1: 925 opt: 938  Z-score: 1091.8  bits: 208.9 E(32554): 1.7e-54
Smith-Waterman score: 938; 67.0% identity (85.0% similar) in 206 aa overlap (1-201:1-204)

                    10        20        30        40        50     
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
CCDS11 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
               10        20          30        40        50        

          60        70        80        90       100       110     
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
CCDS11 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
       60        70        80        90       100       110        

         120       130       140       150       160       170     
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::::::::.:  :
CCDS11 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGMLARGSYSIK
      120       130       140       150       160       170        

         180       190       200 
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
       : :::::: :::::::::.:::.: .
CCDS11 SRFTDDDKTDHLSWEWNLTIKKDWKD
      180       190       200    

>>CCDS10404.1 ARHGDIG gene_id:398|Hs108|chr16             (225 aa)
 initn: 757 init1: 736 opt: 763  Z-score: 889.1  bits: 171.6 E(32554): 3.4e-43
Smith-Waterman score: 763; 57.8% identity (80.4% similar) in 199 aa overlap (3-201:31-225)

                                           10        20        30  
pF1KB6                             MTEKAPEPHVEEDDDDELDSKLNYKPPPQKSL
                                     : .: : :.:  :. .    .:. : .:::
CCDS10 MLGLDACELGAQLLELLRLALCARVLLADKEGGP-PAVDEVLDEAVP---EYRAPGRKSL
               10        20        30         40           50      

             40        50        60        70        80        90  
pF1KB6 KELQEMDKDDESLIKYKKTLLGDGPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLE
        :....: ::.:: :::..:::  : ..::. ::: ::::::. :.::::..::::::: 
CCDS10 LEIRQLDPDDRSLAKYKRVLLGPLPPAVDPSLPNVQVTRLTLLSEQAPGPVVMDLTGDLA
         60        70        80        90       100       110      

            100       110       120       130       140       150  
pF1KB6 ALKKETIVLKEGSEYRVKIHFKVNRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEE
       .:: ...::::: .::::: :::.:.:::::: ..:::: :..:::...:::::::  .:
CCDS10 VLKDQVFVLKEGVDYRVKISFKVHREIVSGLKCLHHTYRRGLRVDKTVYMVGSYGPSAQE
        120       130       140       150       160       170      

            160       170       180       190       200 
pF1KB6 YEFLTPVEEAPKGMLARGTYHNKSFFTDDDKQDHLSWEWNLSIKKEWTE
       :::.:::::::.: :.:: :   :.:::::.  ::::::.: : ..: .
CCDS10 YEFVTPVEEAPRGALVRGPYLVVSLFTDDDRTHHLSWEWGLCICQDWKD
        180       190       200       210       220     

>>CCDS77133.1 ARHGDIA gene_id:396|Hs108|chr17             (235 aa)
 initn: 758 init1: 725 opt: 738  Z-score: 859.9  bits: 166.2 E(32554): 1.4e-41
Smith-Waterman score: 738; 64.2% identity (84.4% similar) in 173 aa overlap (1-168:1-171)

                    10        20        30        40        50     
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
CCDS77 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
               10        20          30        40        50        

          60        70        80        90       100       110     
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
CCDS77 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
       60        70        80        90       100       110        

         120       130       140       150       160       170     
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
       ::.::::.::.::::: :::.::. .:::::::: ::::::::::::::: ..       
CCDS77 NREIVSGMKYIQHTYRKGVKIDKTDYMVGSYGPRAEEYEFLTPVEEAPKGSISPSHPRPG
      120       130       140       150       160       170        

         180       190       200                                
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE                               
                                                                
CCDS77 FRRERSSHSPGPVVAPGRVRLLLRGGAGVWDARPRGGRAVLQPRCSLASPLVAVGPV
      180       190       200       210       220       230     

>>CCDS58609.1 ARHGDIA gene_id:396|Hs108|chr17             (160 aa)
 initn: 707 init1: 554 opt: 567  Z-score: 664.9  bits: 129.6 E(32554): 1e-30
Smith-Waterman score: 597; 49.5% identity (66.0% similar) in 206 aa overlap (1-201:1-160)

                    10        20        30        40        50     
pF1KB6 MTEKAPEPH-----VEEDDDDELDSKLNYKPPPQKSLKELQEMDKDDESLIKYKKTLLGD
       :.:. :  .     . :...::   ..::::: :::..:.::.::::::: :::..::: 
CCDS58 MAEQEPTAEQLAQIAAENEEDE--HSVNYKPPAQKSIQEIQELDKDDESLRKYKEALLGR
               10        20          30        40        50        

          60        70        80        90       100       110     
pF1KB6 GPVVTDPKAPNVVVTRLTLVCESAPGPITMDLTGDLEALKKETIVLKEGSEYRVKIHFKV
         : .::..:::::: ::::: :::::. .:::::::..::...::::: :::.:: :.:
CCDS58 VAVSADPNVPNVVVTGLTLVCSSAPGPLELDLTGDLESFKKQSFVLKEGVEYRIKISFRV
       60        70        80        90       100       110        

         120       130       140       150       160       170     
pF1KB6 NRDIVSGLKYVQHTYRTGVKVDKATFMVGSYGPRPEEYEFLTPVEEAPKGMLARGTYHNK
       ::.::::.::.::::: :::                                        
CCDS58 NREIVSGMKYIQHTYRKGVK----------------------------------------
      120       130                                                

         180       190       200 
pF1KB6 SFFTDDDKQDHLSWEWNLSIKKEWTE
           .::: :::::::::.:::.: .
CCDS58 ----NDDKTDHLSWEWNLTIKKDWKD
          140       150       160




201 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 00:24:39 2016 done: Sat Nov  5 00:24:39 2016
 Total Scan time:  2.250 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]