(Circular) (Six-base) MAPSORT of: pFN21AB3853.seq Check: 394 from: 1 to: 5341 pFN21AB3853 5341 bp With 182 enzymes: SgfI * October 20, 2009 10:46 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3151 278 Size: 53 83 186 936 1615 2468 Fragments arranged by size: 2468 1615 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2208 2684 1937 Size: 271 476 4594 Fragments arranged by size: 4594 476 271 Acc65I G'GTAC_C Cuts at: 2662 2662 Size: 5341 AclI AA'CG_TT Cuts at: 1563 3468 3841 1563 Size: 1905 373 3063 Fragments arranged by size: 3063 1905 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2452 2619 3404 4788 5056 1632 Size: 820 167 785 1384 268 1917 Fragments arranged by size: 1917 1384 820 785 268 167 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5144 AflIII A'CryG_T Cuts at: 1203 4240 5217 1203 Size: 3037 977 1327 Fragments arranged by size: 3037 1327 977 AgeI A'CCGG_T Cuts at: 2203 4172 2203 Size: 1969 3372 AhdI GACnn_n'nnGTC Cuts at: 4070 4070 Size: 5341 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5341 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 2386 1184 Size: 1202 4139 AlwNI CAG_nnn'CTG Cuts at: 2306 2374 3084 4656 2306 Size: 68 710 1572 2991 Fragments arranged by size: 2991 1572 710 68 ApaI G_GGCC'C Cuts at: 2382 2382 Size: 5341 ApaLI G'TGCA_C Cuts at: 2320 3398 4554 2320 Size: 1078 1156 3107 Fragments arranged by size: 3107 1156 1078 ApoI r'AATT_y Cuts at: 1493 2126 2441 2650 2876 3028 5137 1493 Size: 633 315 209 226 152 2109 1697 Fragments arranged by size: 2109 1697 633 315 226 209 152 AseI AT'TA_AT Cuts at: 160 1032 3895 160 Size: 872 2863 1606 Fragments arranged by size: 2863 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5341 AvaI C'yCGr_G Cuts at: 1870 1943 2666 1870 Size: 73 723 4545 Fragments arranged by size: 4545 723 73 BamHI G'GATC_C Cuts at: 2165 2671 3038 2165 Size: 506 367 4468 Fragments arranged by size: 4468 506 367 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2662 4117 618 Size: 325 217 627 875 1455 1842 Fragments arranged by size: 1842 1455 875 627 325 217 BanII G_rGCy'C Cuts at: 1391 2382 2660 1391 Size: 991 278 4072 Fragments arranged by size: 4072 991 278 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2344 2416 2625 928 Size: 971 445 72 209 3644 Fragments arranged by size: 3644 971 445 209 72 BbvCI CC'TCA_GC Cuts at: 2156 2156 Size: 5341 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3532 3566 1903 Size: 34 1595 34 3678 Fragments arranged by size: 3678 1595 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3233 4443 3233 Size: 1210 4131 BclI T'GATC_A Cuts at: 1548 1548 Size: 5341 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 3952 136 Size: 107 122 71 631 605 2280 1525 Fragments arranged by size: 2280 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5336 5336 Size: 5341 BlpI GC'TnA_GC Cuts at: 2758 2758 Size: 5341 Bme1580I G_kGCm'C Cuts at: 1790 2324 2382 3402 4558 1790 Size: 534 58 1020 1156 2573 Fragments arranged by size: 2573 1156 1020 534 58 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5341 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2188 2362 3072 Size: 416 53 83 399 24 771 174 710 Cuts at: 3072 4030 442 Size: 958 1753 Fragments arranged by size: 1753 958 771 710 416 399 174 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5341 BplI GAGnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 2414 2414 Size: 5341 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2580 2640 4001 1239 Size: 1341 60 1361 2579 Fragments arranged by size: 2579 1361 1341 60 Bpu10I CC'TnA_GC Cuts at: 2156 2156 Size: 5341 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2082 3466 4331 4629 2082 Size: 1384 865 298 2794 Fragments arranged by size: 2794 1384 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4004 882 Size: 617 2505 2219 Fragments arranged by size: 2505 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3132 493 Size: 711 1928 2702 Fragments arranged by size: 2702 1928 711 BsaBI GATnn'nnATC Cuts at: 2336 5335 2336 Size: 2999 2342 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3148 3530 4165 275 Size: 53 83 186 936 1615 382 635 1451 Fragments arranged by size: 1615 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2203 3774 4172 4446 4593 5004 2203 Size: 1571 398 274 147 411 2540 Fragments arranged by size: 2540 1571 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5116 Fragments arranged by size: 5116 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2144 2609 1186 Size: 958 465 3918 Fragments arranged by size: 3918 958 465 BseYI C'CCAG_C Cuts at: 2481 4544 5040 2481 Size: 2063 496 2782 Fragments arranged by size: 2782 2063 496 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2279 1163 Size: 573 543 4225 Fragments arranged by size: 4225 573 543 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2208 2791 3552 4580 1540 Size: 275 186 207 583 761 1028 2301 Fragments arranged by size: 2301 1028 761 583 275 207 186 BsiHKAI G_wGCw'C Cuts at: 2324 3402 3487 4558 2324 Size: 1078 85 1071 3107 Fragments arranged by size: 3107 1078 1071 85 BsmI GAATG_Cn' Cuts at: 2852 2945 2852 Size: 93 5248 BsmBI CGTCTCn'nnnn_ Cuts at: 2528 2528 Size: 5341 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2324 2382 2660 3402 3487 4558 1391 Size: 399 534 58 278 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 534 399 278 85 58 BspEI T'CCGG_A Cuts at: 5004 5004 Size: 5341 BspHI T'CATG_A Cuts at: 3230 4960 3230 Size: 1730 3611 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2696 844 Size: 1852 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3228 1394 Size: 429 1405 3507 Fragments arranged by size: 3507 1405 429 BsrDI GCAATG_nn' Cuts at: 65 1248 2244 3836 4010 65 Size: 1183 996 1592 174 1396 Fragments arranged by size: 1592 1396 1183 996 174 BsrFI r'CCGG_y Cuts at: 1700 1810 2203 3985 4172 1700 Size: 110 393 1782 187 2869 Fragments arranged by size: 2869 1782 393 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5341 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5341 BssSI C'ACGA_G Cuts at: 3401 4413 3401 Size: 1012 4329 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5341 BstBI TT'CG_AA Cuts at: 4145 4145 Size: 5341 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5341 BstYI r'GATC_y Cuts at: 1972 2165 2671 3038 3423 3440 4892 4978 4990 Size: 193 506 367 385 17 1452 86 12 Cuts at: 4990 5336 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 506 385 367 346 193 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2253 2313 513 Size: 552 1188 60 3541 Fragments arranged by size: 3541 1188 552 60 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2323 2344 487 Size: 683 56 1097 21 3484 Fragments arranged by size: 3484 1097 683 56 21 BtsI GCAGTG_nn' Cuts at: 2267 2307 2857 3651 3671 2267 Size: 40 550 794 20 3937 Fragments arranged by size: 3937 794 550 40 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5341 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2164 2199 529 Size: 35 1600 35 3671 Fragments arranged by size: 3671 1600 35 35 DraI TTT'AAA Cuts at: 2458 2645 2458 Size: 187 5154 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4348 809 Size: 507 3032 1802 Fragments arranged by size: 3032 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2133 2269 2284 Size: 54 1425 50 275 18 303 136 15 Cuts at: 2284 2310 2788 3677 5306 8 Size: 26 478 889 1629 43 Fragments arranged by size: 1629 1425 889 478 303 275 136 54 50 43 26 18 15 EagI C'GGCC_G Cuts at: 1537 1812 2788 1537 Size: 275 976 4090 Fragments arranged by size: 4090 976 275 EarI CTCTTCn'nnn_ Cuts at: 1353 3271 1353 Size: 1918 3423 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3928 4302 4448 387 Size: 1064 138 2339 374 146 1280 Fragments arranged by size: 2339 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2452 2580 2619 2640 3404 4001 4788 Size: 393 820 128 39 21 764 597 787 Cuts at: 4788 5056 1239 Size: 268 1524 Fragments arranged by size: 1524 820 787 764 597 393 268 128 39 21 EcoO109I rG'GnC_Cy Cuts at: 2378 2378 Size: 5341 EcoRI G'AATT_C Cuts at: 2441 2650 3028 2441 Size: 209 378 4754 Fragments arranged by size: 4754 378 209 FalI AAGnnnnnCTTnnnnnnnn_nnnnn' Cuts at: 2368 2368 Size: 5341 FspI TGC'GCA Cuts at: 3847 3847 Size: 5341 HaeII r_GCGC'y Cuts at: 1678 4488 1678 Size: 2810 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2052 2084 2157 2189 2615 Size: 32 135 32 480 32 73 32 426 Cuts at: 2615 2647 3982 4014 4056 4088 1373 Size: 32 1335 32 42 32 2626 Fragments arranged by size: 2626 1335 480 426 135 73 42 32 32 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2209 2584 2685 2931 669 Size: 988 281 271 375 101 246 3079 Fragments arranged by size: 3079 988 375 281 271 246 101 HindIII A'AGCT_T Cuts at: 748 2100 748 Size: 1352 3989 HpaI GTT'AAC Cuts at: 2931 2931 Size: 5341 KpnI G_GTAC'C Cuts at: 2666 2666 Size: 5341 MfeI C'AATT_G Cuts at: 2940 2940 Size: 5341 MluI A'CGCG_T Cuts at: 5217 5217 Size: 5341 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4455 4639 1305 Size: 3150 184 2007 Fragments arranged by size: 3150 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2135 2271 2286 2312 10 Size: 54 1425 343 303 136 15 26 3039 Fragments arranged by size: 3039 1425 343 303 136 54 26 15 MslI CAynn'nnrTG Cuts at: 518 1166 2072 2507 3299 3658 3817 518 Size: 648 906 435 792 359 159 2042 Fragments arranged by size: 2042 906 792 648 435 359 159 MspA1I CmG'CkG Cuts at: 1606 2123 2280 2757 3434 4582 4827 1606 Size: 517 157 477 677 1148 245 2120 Fragments arranged by size: 2120 1148 677 517 477 245 157 NcoI C'CATG_G Cuts at: 513 1065 2253 2313 513 Size: 552 1188 60 3541 Fragments arranged by size: 3541 1188 552 60 NdeI CA'TA_TG Cuts at: 387 387 Size: 5341 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5341 NotI GC'GGCC_GC Cuts at: 2788 2788 Size: 5341 NspI r_CATG'y Cuts at: 1132 1229 2573 2699 4244 1132 Size: 97 1344 126 1545 2229 Fragments arranged by size: 2229 1545 1344 126 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5341 PciI A'CATG_T Cuts at: 4240 4240 Size: 5341 PflMI CCAn_nnn'nTGG Cuts at: 1108 2178 2374 1108 Size: 1070 196 4075 Fragments arranged by size: 4075 1070 196 PmeI GTTT'AAAC Cuts at: 2645 2645 Size: 5341 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3410 3442 4923 4955 3410 Size: 32 1481 32 3796 Fragments arranged by size: 3796 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5341 PsiI TTA'TAA Cuts at: 2911 2911 Size: 5341 PspOMI G'GGCC_C Cuts at: 2378 2378 Size: 5341 PstI C_TGCA'G Cuts at: 830 2302 2693 830 Size: 1472 391 3478 Fragments arranged by size: 3478 1472 391 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5341 SalI G'TCGA_C Cuts at: 1936 2207 2683 1936 Size: 271 476 4594 Fragments arranged by size: 4594 476 271 SbfI CC_TGCA'GG Cuts at: 2693 2693 Size: 5341 ScaI AGT'ACT Cuts at: 3589 5301 3589 Size: 1712 3629 SfcI C'TryA_G Cuts at: 826 1045 2298 2689 3824 4505 4696 826 Size: 219 1253 391 1135 681 191 1471 Fragments arranged by size: 1471 1253 1135 681 391 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5341 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5341 SmaI CCC'GGG Cuts at: 1872 2668 1872 Size: 796 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2097 3445 4346 4608 820 Size: 197 926 154 1348 901 262 1553 Fragments arranged by size: 1553 1348 926 901 262 197 154 SnaBI TAC'GTA Cuts at: 493 3132 493 Size: 2639 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5341 SphI G_CATG'C Cuts at: 1132 2699 1132 Size: 1567 3774 SspI AAT'ATT Cuts at: 5 52 3265 5 Size: 47 3213 2081 Fragments arranged by size: 3213 2081 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5341 StyI C'CwwG_G Cuts at: 513 1065 2253 2313 2780 513 Size: 552 1188 60 467 3074 Fragments arranged by size: 3074 1188 552 467 60 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3368 3385 3538 3723 4168 325 Size: 1255 1788 17 153 185 445 1498 Fragments arranged by size: 1788 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3587 5299 96 Size: 274 80 33 51 1443 1610 1712 138 Fragments arranged by size: 1712 1610 1443 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5301 5333 5301 Size: 32 5309 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5341 XbaI T'CTAG_A Cuts at: 2677 2677 Size: 5341 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2279 2279 Size: 5341 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5341 XmaI C'CCGG_G Cuts at: 1870 2666 1870 Size: 796 4545 XmnI GAAnn'nnTTC Cuts at: 3470 3470 Size: 5341 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3149 276 Size: 53 83 186 936 1615 2468 Fragments arranged by size: 2468 1615 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BbvCI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BplI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI BsmBI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FalI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI AscI AvrII BaeI BbeI BfrBI BsiWI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI