FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB7182, 184 aa 1>>>pF1KB7182 184 - 184 aa - 184 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 7.2033+/-0.000246; mu= 7.4139+/- 0.016 mean_var=164.0397+/-33.762, 0's: 0 Z-trim(125.9): 2 B-trim: 836 in 1/60 Lambda= 0.100138 statistics sampled from 50734 (50738) to 50734 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.595), width: 16 Scan time: 7.430 The best scores are: opt bits E(85289) NP_443177 (OMIM: 240500,606269,613494) tumor necro ( 184) 1264 192.7 2.8e-49 >>NP_443177 (OMIM: 240500,606269,613494) tumor necrosis (184 aa) initn: 1264 init1: 1264 opt: 1264 Z-score: 1005.8 bits: 192.7 E(85289): 2.8e-49 Smith-Waterman score: 1264; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184) 10 20 30 40 50 60 pF1KB7 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_443 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB7 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_443 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD 70 80 90 100 110 120 130 140 150 160 170 180 pF1KB7 KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_443 KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG 130 140 150 160 170 180 pF1KB7 PEQQ :::: NP_443 PEQQ 184 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 04:50:06 2016 done: Mon Nov 7 04:50:08 2016 Total Scan time: 7.430 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]