FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7182, 184 aa
  1>>>pF1KB7182 184 - 184 aa - 184 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 7.3363+/-0.00062; mu= 6.9126+/- 0.038
 mean_var=166.4331+/-32.999, 0's: 0 Z-trim(118.4): 2  B-trim: 0 in 0/55
 Lambda= 0.099416
 statistics sampled from 19379 (19381) to 19379 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.864), E-opt: 0.2 (0.595), width:  16
 Scan time:  2.490

The best scores are:                                      opt bits E(32554)
CCDS14024.1 TNFRSF13C gene_id:115650|Hs108|chr22   ( 184) 1264 191.4 2.6e-49


>>CCDS14024.1 TNFRSF13C gene_id:115650|Hs108|chr22        (184 aa)
 initn: 1264 init1: 1264 opt: 1264  Z-score: 998.8  bits: 191.4 E(32554): 2.6e-49
Smith-Waterman score: 1264; 100.0% identity (100.0% similar) in 184 aa overlap (1-184:1-184)

               10        20        30        40        50        60
pF1KB7 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 MRRGPRSLRGRDAPAPTPCVPAECFDLLVRHCVACGLLRTPRPKPAGASSPAPRTALQPQ
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 ESVGAGAGEAALPLPGLLFGAPALLGLALVLALVLVGLVSWRRRQRRLRGASSAEAPDGD
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS14 KDAPEPLDKVIILSPGISDATAPAWPPPGEDPGTTPPGHSVPVPATELGSTELVTTKTAG
              130       140       150       160       170       180

           
pF1KB7 PEQQ
       ::::
CCDS14 PEQQ
           




184 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Mon Nov  7 04:50:06 2016 done: Mon Nov  7 04:50:06 2016
 Total Scan time:  2.490 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]