hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /data/smart.HMMs.bin Sequence file: /tmp/20091008/iprscan-20091008-19205516/chunk_1/iprscan-20091008-19205516.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: pF1KE0773 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- SM00220 332.1 3.8e-95 1 SM00219 44.1 7.2e-14 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- SM00219 1/1 77 327 .. 1 280 [] 44.1 7.2e-14 SM00220 1/1 77 327 .. 1 231 [] 332.1 3.8e-95 Alignments of top-scoring domains: SM00219: domain 1 of 1, from 77 to 327: score 44.1, E = 7.2e-14 *->ltlgkkLGeGaFGeVykGtlk...ieVAVKtLkeda......keeFl + g+ LG G FG Vy+++ k+++ VA K+L ++ ++++ + ++ pF1KE0773 77 FEIGRPLGKGKFGNVYLAREKkshFIVALKVLFKSQiekegvEHQLR 123 rEakiMkklGgkHpNiVkLlGvcteegrrFmevePlmivmEymegGdLld rE++i +l +HpNi++L+ + + +++++Ey++ G L + pF1KE0773 124 REIEIQAHL--HHPNILRLYNYFYDR-------RRIYLILEYAPRGELYK 164 yLrknrpklslsdLlsfAlQIAkGMeYLesknfvHRDLAARNcLvgenkv L+k+ + + ++ A+ Y + k+++HRD+ N L+g ++ pF1KE0773 165 ELQKSCT-FDEQRTATIMEELADALMYCHGKKVIHRDIKPENLLLGLKGE 213 vKIsDFGLsRdlyddDkkGeskdyYrkkggkggktllPirWmAPEslkdg KI+DFG s + +++ +g + ++PE + + pF1KE0773 214 LKIADFGWSVHAPSL-------RRKTM----CGT----LDYLPPEMIEGR 248 kFtskSDVWSFGVlLWEiftlGeqPYpgeiqqfmsneevleylkkGyRlp + ++k D W GVl++E++ G +P + s e ++++ k l+ pF1KE0773 249 MHNEKVDLWCIGVLCYELL-VGNPPFES-----ASHNETYRRIVKV-DLK 291 kPendlpiSsvtCPdelYdlMlqCWaedPedRPtFsel..verl<-* P++ P+ dl+++ +++P++R ++++ + pF1KE0773 292 FPAS--------VPTGAQDLISKLLRHNPSERLPLAQVsaHPWV 327 SM00220: domain 1 of 1, from 77 to 327: score 332.1, E = 3.8e-95 *->YellkklGkGaFGkVylardkktgrlvAiKvik..........eril +e++++lGkG FG Vylar+kk++ +vA+Kv+ +++ ++++ + +++ pF1KE0773 77 FEIGRPLGKGKFGNVYLAREKKSHFIVALKVLFksqiekegveHQLR 123 rEikiLkk.dHPNIVkLydvfed.dklylVmEyceGdlGdLfdllkkrgr rEi+i + +HPNI +Ly +f+d+ ++yl++Ey++ G+L++ l+k + pF1KE0773 124 REIEIQAHlHHPNILRLYNYFYDrRRIYLILEYAPR--GELYKELQKSCT 171 rglrkvlsE.earfyfrQilsaLeYLHsqgIiHRDLKPeNiLLds..hvK ++E++++ ++ ++++aL Y+H +++iHRD+KPeN+LL ++++K pF1KE0773 172 ------FDEqRTATIMEELADALMYCHGKKVIHRDIKPENLLLGLkgELK 215 laDFGlArql.....ttfvGTpeYmAPEvl...gYgkpavDiWSlGcily +aDFG + + ++ +++t++GT++Y++PE+++++ ++ +vD W +G++ y pF1KE0773 216 IADFGWSVHApslrrKTMCGTLDYLPPEMIegrMHNE-KVDLWCIGVLCY 264 ElltGkpPFp..qldlifkkig..........SpeakdLikklLvkdPek Ell+G pPF++ +++++++i++ + + + + + a dLi+klL+ +P++ pF1KE0773 265 ELLVGNPPFEsaSHNETYRRIVkvdlkfpasvPTGAQDLISKLLRHNPSE 314 Rlta.eaLedeldikaHPff<-* Rl ++ + HP++ pF1KE0773 315 RLPLaQVSA-------HPWV 327 //