Result of FASTA (omim) for
pFN21AB0940
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB0940, 390 aa
1>>>pF1KB0940 390 - 390 aa - 390 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.3547+/-0.000348; mu= 13.8689+/- 0.022
mean_var=128.0414+/-26.487, 0's: 0 Z-trim(119.2): 130 B-trim: 1732 in 2/50
Lambda= 0.113344
statistics sampled from 32714 (32874) to 32714 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.734), E-opt: 0.2 (0.385), width: 16
Scan time: 9.320
The best scores are: opt bits E(85289)
NP_002389 (OMIM: 601739) homeobox protein Meis1 [H ( 390) 2740 459.0 8.7e-129
XP_005264380 (OMIM: 601739) PREDICTED: homeobox pr ( 406) 2714 454.8 1.7e-127
XP_005264379 (OMIM: 601739) PREDICTED: homeobox pr ( 465) 2601 436.3 6.9e-122
XP_005264378 (OMIM: 601739) PREDICTED: homeobox pr ( 481) 2575 432.1 1.3e-120
NP_733774 (OMIM: 601740) homeobox protein Meis2 is ( 394) 2377 399.6 6.5e-111
XP_016859631 (OMIM: 601739) PREDICTED: homeobox pr ( 417) 2377 399.7 6.7e-111
XP_006720588 (OMIM: 601740) PREDICTED: homeobox pr ( 393) 2351 395.4 1.2e-109
XP_016859630 (OMIM: 601739) PREDICTED: homeobox pr ( 433) 2351 395.4 1.3e-109
NP_002390 (OMIM: 601740) homeobox protein Meis2 is ( 381) 2284 384.4 2.4e-106
NP_733776 (OMIM: 601740) homeobox protein Meis2 is ( 470) 2250 379.0 1.3e-104
NP_001207411 (OMIM: 601740) homeobox protein Meis2 ( 470) 2250 379.0 1.3e-104
XP_005264382 (OMIM: 601739) PREDICTED: homeobox pr ( 325) 2163 364.6 1.9e-100
NP_733777 (OMIM: 601740) homeobox protein Meis2 is ( 401) 2074 350.1 5.4e-96
NP_733775 (OMIM: 601740) homeobox protein Meis2 is ( 477) 2074 350.2 6.1e-96
XP_006720587 (OMIM: 601740) PREDICTED: homeobox pr ( 400) 2048 345.9 1e-94
XP_006720586 (OMIM: 601740) PREDICTED: homeobox pr ( 476) 2048 345.9 1.2e-94
XP_005264381 (OMIM: 601739) PREDICTED: homeobox pr ( 400) 2024 341.9 1.6e-93
NP_758526 (OMIM: 601740) homeobox protein Meis2 is ( 388) 1981 334.9 2e-91
NP_758527 (OMIM: 601740) homeobox protein Meis2 is ( 306) 1879 318.1 1.8e-86
XP_016877694 (OMIM: 601740) PREDICTED: homeobox pr ( 306) 1879 318.1 1.8e-86
XP_016859632 (OMIM: 601739) PREDICTED: homeobox pr ( 352) 1800 305.3 1.5e-82
XP_016859635 (OMIM: 601739) PREDICTED: homeobox pr ( 246) 1729 293.5 3.6e-79
XP_006720589 (OMIM: 601740) PREDICTED: homeobox pr ( 389) 1720 292.2 1.4e-78
XP_016859634 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 1590 270.9 3.1e-72
XP_016859633 (OMIM: 601739) PREDICTED: homeobox pr ( 321) 1590 270.9 3.1e-72
XP_006720592 (OMIM: 601740) PREDICTED: homeobox pr ( 255) 1477 252.3 9.5e-67
XP_006720590 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 1342 230.3 5.1e-60
XP_011519893 (OMIM: 601740) PREDICTED: homeobox pr ( 331) 1342 230.3 5.1e-60
NP_001307623 (OMIM: 602100) homeobox protein PKNOX ( 435) 459 86.1 1.8e-16
XP_016873601 (OMIM: 613066) PREDICTED: homeobox pr ( 327) 453 85.0 2.9e-16
XP_011541248 (OMIM: 613066) PREDICTED: homeobox pr ( 356) 453 85.0 3.1e-16
NP_004562 (OMIM: 602100) homeobox protein PKNOX1 i ( 436) 443 83.4 1.1e-15
XP_011541249 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 386 74.0 5.9e-13
XP_006718957 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 386 74.0 5.9e-13
XP_016873600 (OMIM: 613066) PREDICTED: homeobox pr ( 339) 386 74.0 5.9e-13
XP_005271700 (OMIM: 613066) PREDICTED: homeobox pr ( 443) 386 74.1 7.1e-13
XP_016873599 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 386 74.2 7.5e-13
XP_011541246 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 386 74.2 7.5e-13
NP_071345 (OMIM: 613066) homeobox protein PKNOX2 [ ( 472) 386 74.2 7.5e-13
XP_011541247 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 386 74.2 7.5e-13
XP_005271699 (OMIM: 613066) PREDICTED: homeobox pr ( 472) 386 74.2 7.5e-13
NP_001273187 (OMIM: 602100) homeobox protein PKNOX ( 319) 375 72.2 2e-12
NP_620410 (OMIM: 300411) homeobox protein TGIF2LX ( 241) 258 52.9 9.2e-07
NP_631960 (OMIM: 400025) homeobox protein TGIF2LY ( 185) 252 51.9 1.5e-06
NP_775299 (OMIM: 142946,602630) homeobox protein T ( 286) 247 51.2 3.6e-06
NP_068581 (OMIM: 607294) homeobox protein TGIF2 [H ( 237) 245 50.8 4e-06
NP_001186444 (OMIM: 607294) homeobox protein TGIF2 ( 237) 245 50.8 4e-06
NP_001186442 (OMIM: 607294) homeobox protein TGIF2 ( 237) 245 50.8 4e-06
NP_001186443 (OMIM: 607294) homeobox protein TGIF2 ( 237) 245 50.8 4e-06
XP_016881447 (OMIM: 142946,602630) PREDICTED: home ( 272) 239 49.9 8.7e-06
>>NP_002389 (OMIM: 601739) homeobox protein Meis1 [Homo (390 aa)
initn: 2740 init1: 2740 opt: 2740 Z-score: 2433.1 bits: 459.0 E(85289): 8.7e-129
Smith-Waterman score: 2740; 100.0% identity (100.0% similar) in 390 aa overlap (1-390:1-390)
10 20 30 40 50 60
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVM
310 320 330 340 350 360
370 380 390
pF1KB0 DGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
::::::::::::::::::::::::::::::
NP_002 DGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
370 380 390
>>XP_005264380 (OMIM: 601739) PREDICTED: homeobox protei (406 aa)
initn: 2714 init1: 2714 opt: 2714 Z-score: 2409.9 bits: 454.8 E(85289): 1.7e-127
Smith-Waterman score: 2714; 100.0% identity (100.0% similar) in 386 aa overlap (5-390:21-406)
10 20 30 40
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
::::::::::::::::::::::::::::::::::::::::
XP_005 MAQRRKMESCAFAFEFALNLYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB0 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB0 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB0 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB0 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB0 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQ
310 320 330 340 350 360
350 360 370 380 390
pF1KB0 GTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
370 380 390 400
>>XP_005264379 (OMIM: 601739) PREDICTED: homeobox protei (465 aa)
initn: 2599 init1: 2599 opt: 2601 Z-score: 2309.3 bits: 436.3 E(85289): 6.9e-122
Smith-Waterman score: 2603; 96.4% identity (96.9% similar) in 392 aa overlap (1-382:1-392)
10 20 30 40 50 60
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB0 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMGGFVM
310 320 330 340 350 360
370 380 390
pF1KB0 DGQQHMGIRAPG--PMSG--------MGMNMGMEGQWHYM
:::::::::::: : : ::..::
XP_005 DGQQHMGIRAPGLQSMPGEYVARGGPMGVSMGQPSYTQPQMPPHPAQLRHGPPMHTYIPG
370 380 390 400 410 420
XP_005 HPHHPTVMMHGGPPHPGMPMSASSPTVLNTGDPTMSGQVMDIHAQ
430 440 450 460
>>XP_005264378 (OMIM: 601739) PREDICTED: homeobox protei (481 aa)
initn: 2573 init1: 2573 opt: 2575 Z-score: 2286.1 bits: 432.1 E(85289): 1.3e-120
Smith-Waterman score: 2577; 96.4% identity (96.9% similar) in 388 aa overlap (5-382:21-408)
10 20 30 40
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
::::::::::::::::::::::::::::::::::::::::
XP_005 MAQRRKMESCAFAFEFALNLYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB0 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB0 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB0 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB0 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB0 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQ
310 320 330 340 350 360
350 360 370 380 390
pF1KB0 GTPYNPDGQPMGGFVMDGQQHMGIRAPG--PMSG--------MGMNMGMEGQWHYM
:::::::::::::::::::::::::::: : : ::..::
XP_005 GTPYNPDGQPMGGFVMDGQQHMGIRAPGLQSMPGEYVARGGPMGVSMGQPSYTQPQMPPH
370 380 390 400 410 420
XP_005 PAQLRHGPPMHTYIPGHPHHPTVMMHGGPPHPGMPMSASSPTVLNTGDPTMSGQVMDIHA
430 440 450 460 470 480
>>NP_733774 (OMIM: 601740) homeobox protein Meis2 isofor (394 aa)
initn: 1443 init1: 1141 opt: 2377 Z-score: 2112.3 bits: 399.6 E(85289): 6.5e-111
Smith-Waterman score: 2377; 85.8% identity (94.9% similar) in 394 aa overlap (1-390:1-394)
10 20 30 40 50
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTAHTNA
::::::.:::::::::::.:..::::::: : . ::::::::::::. :. :. : :.
NP_733 MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 MAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFN
: ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::
NP_733 MPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 EDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 EDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 GKMPIDLVIDDREGGSKSDSEDIT-RSANLTDQ-PSWNRDHDDTASTRSGGTPGPSSGGH
::::::::::.:.:.:::: :... :.::.:. :: :::::..::.:.::::::::::
NP_733 GKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGH
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 TSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLT
.:.:::::::::::::::::::.:::::::::::::.:::::::::::::::::::::::
NP_733 ASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMG
:::::::::::::::::::::::::::::::::::::::::::::::::. :.:.:::::
NP_733 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMG
310 320 330 340 350 360
360 370 380 390
pF1KB0 GFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
.::.::::::::: ::::::::::::.::::::
NP_733 SFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM
370 380 390
>>XP_016859631 (OMIM: 601739) PREDICTED: homeobox protei (417 aa)
initn: 2726 init1: 2367 opt: 2377 Z-score: 2111.9 bits: 399.7 E(85289): 6.7e-111
Smith-Waterman score: 2676; 93.5% identity (93.5% similar) in 417 aa overlap (1-390:1-417)
10 20 30 40 50 60
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQYPHTAHTNAMA
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB0 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFNED
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB0 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLKGK
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB0 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTRSGGTPGPSSGGHTSHS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB0 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLTHPYP
250 260 270 280 290 300
310 320 330 340
pF1KB0 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRA-------------------
:::::::::::::::::::::::::::::::::::::::::
XP_016 SEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGKSPIVTVFKSRKRKPSSS
310 320 330 340 350 360
350 360 370 380 390
pF1KB0 --------VSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
:::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 HSPGGPLPVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
370 380 390 400 410
>>XP_006720588 (OMIM: 601740) PREDICTED: homeobox protei (393 aa)
initn: 1417 init1: 1141 opt: 2351 Z-score: 2089.3 bits: 395.4 E(85289): 1.2e-109
Smith-Waterman score: 2351; 85.6% identity (94.9% similar) in 390 aa overlap (5-390:4-393)
10 20 30 40 50
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTAHTNA
::.:::::::::::.:..::::::: : . ::::::::::::. :. :. : :.
XP_006 MFLYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNV
10 20 30 40 50
60 70 80 90 100 110
pF1KB0 MAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFN
: ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::
XP_006 MPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFN
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB0 EDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 EDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB0 GKMPIDLVIDDREGGSKSDSEDIT-RSANLTDQ-PSWNRDHDDTASTRSGGTPGPSSGGH
::::::::::.:.:.:::: :... :.::.:. :: :::::..::.:.::::::::::
XP_006 GKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB0 TSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLT
.:.:::::::::::::::::::.:::::::::::::.:::::::::::::::::::::::
XP_006 ASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB0 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMG
:::::::::::::::::::::::::::::::::::::::::::::::::. :.:.:::::
XP_006 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMG
300 310 320 330 340 350
360 370 380 390
pF1KB0 GFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
.::.::::::::: ::::::::::::.::::::
XP_006 SFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM
360 370 380 390
>>XP_016859630 (OMIM: 601739) PREDICTED: homeobox protei (433 aa)
initn: 2700 init1: 2341 opt: 2351 Z-score: 2088.8 bits: 395.4 E(85289): 1.3e-109
Smith-Waterman score: 2650; 93.5% identity (93.5% similar) in 413 aa overlap (5-390:21-433)
10 20 30 40
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
::::::::::::::::::::::::::::::::::::::::
XP_016 MAQRRKMESCAFAFEFALNLYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPP
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB0 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LHSHQYPHTAHTNAMAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREP
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB0 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GVAGGDVCSSESFNEDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHE
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB0 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 LCDNFCHRYISCLKGKMPIDLVIDDREGGSKSDSEDITRSANLTDQPSWNRDHDDTASTR
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB0 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SGGTPGPSSGGHTSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVAT
250 260 270 280 290 300
290 300 310 320 330 340
pF1KB0 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRA---
:::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAGKS
310 320 330 340 350 360
350 360 370
pF1KB0 ------------------------VSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGM
::::::::::::::::::::::::::::::::::::
XP_016 PIVTVFKSRKRKPSSSHSPGGPLPVSQGTPYNPDGQPMGGFVMDGQQHMGIRAPGPMSGM
370 380 390 400 410 420
380 390
pF1KB0 GMNMGMEGQWHYM
:::::::::::::
XP_016 GMNMGMEGQWHYM
430
>>NP_002390 (OMIM: 601740) homeobox protein Meis2 isofor (381 aa)
initn: 1350 init1: 1141 opt: 2284 Z-score: 2030.3 bits: 384.4 E(85289): 2.4e-106
Smith-Waterman score: 2284; 85.6% identity (94.8% similar) in 381 aa overlap (14-390:1-381)
10 20 30 40 50
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTAHTNA
:::::.:..::::::: : . ::::::::::::. :. :. : :.
NP_002 MDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNV
10 20 30 40
60 70 80 90 100 110
pF1KB0 MAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFN
: ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::
NP_002 MPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFN
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB0 EDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB0 GKMPIDLVIDDREGGSKSDSEDIT-RSANLTDQ-PSWNRDHDDTASTRSGGTPGPSSGGH
::::::::::.:.:.:::: :... :.::.:. :: :::::..::.:.::::::::::
NP_002 GKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGH
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB0 TSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLT
.:.:::::::::::::::::::.:::::::::::::.:::::::::::::::::::::::
NP_002 ASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB0 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMG
:::::::::::::::::::::::::::::::::::::::::::::::::. :.:.:::::
NP_002 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMG
290 300 310 320 330 340
360 370 380 390
pF1KB0 GFVMDGQQHMGIRAPGPMSGMGMNMGMEGQWHYM
.::.::::::::: ::::::::::::.::::::
NP_002 SFVLDGQQHMGIRPAGPMSGMGMNMGMDGQWHYM
350 360 370 380
>>NP_733776 (OMIM: 601740) homeobox protein Meis2 isofor (470 aa)
initn: 2273 init1: 1004 opt: 2250 Z-score: 1999.0 bits: 379.0 E(85289): 1.3e-104
Smith-Waterman score: 2250; 83.0% identity (92.6% similar) in 393 aa overlap (1-383:1-393)
10 20 30 40 50
pF1KB0 MAQRYDDLPHYGGMDGVGIPSTMYGDPHAARSMQPVHHLNHGPPLHSHQY--PHTAHTNA
::::::.:::::::::::.:..::::::: : . ::::::::::::. :. :. : :.
NP_733 MAQRYDELPHYGGMDGVGVPASMYGDPHAPRPIPPVHHLNHGPPLHATQHYGAHAPHPNV
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB0 MAPSMGSSVNDALKRDKDAIYGHPLFPLLALIFEKCELATCTPREPGVAGGDVCSSESFN
: ::::.:::::::::::::::::::::::.::::::::::::::::::::::::.:::
NP_733 MPASMGSAVNDALKRDKDAIYGHPLFPLLALVFEKCELATCTPREPGVAGGDVCSSDSFN
70 80 90 100 110 120
120 130 140 150 160 170
pF1KB0 EDIAVFAKQIRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
:::::::::.::::::::::::::::::::::::::::::::::::::::::::::::::
NP_733 EDIAVFAKQVRAEKPLFSSNPELDNLMIQAIQVLRFHLLELEKVHELCDNFCHRYISCLK
130 140 150 160 170 180
180 190 200 210 220 230
pF1KB0 GKMPIDLVIDDREGGSKSDSEDIT-RSANLTDQ-PSWNRDHDDTASTRSGGTPGPSSGGH
::::::::::.:.:.:::: :... :.::.:. :: :::::..::.:.::::::::::
NP_733 GKMPIDLVIDERDGSSKSDHEELSGSSTNLADHNPSSWRDHDDATSTHSAGTPGPSSGGH
190 200 210 220 230 240
240 250 260 270 280 290
pF1KB0 TSHSGDNSSEQGDGLDNSVASPSTGDDDDPDKDKKRHKKRGIFPKVATNIMRAWLFQHLT
.:.:::::::::::::::::::.:::::::::::::.:::::::::::::::::::::::
NP_733 ASQSGDNSSEQGDGLDNSVASPGTGDDDDPDKDKKRQKKRGIFPKVATNIMRAWLFQHLT
250 260 270 280 290 300
300 310 320 330 340 350
pF1KB0 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGTPYNPDGQPMG
:::::::::::::::::::::::::::::::::::::::::::::::::. :.:.:::::
NP_733 HPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQSNRAVSQGAAYSPEGQPMG
310 320 330 340 350 360
360 370 380 390
pF1KB0 GFVMDGQQHMGIRA------PGPMSGMGMNMGMEGQWHYM
.::.::::::::: :: . ..: :::
NP_733 SFVLDGQQHMGIRPAGLQSMPGDYVSQGGPMGMSMAQPSYTPPQMTPHPTQLRHGPPMHS
370 380 390 400 410 420
NP_733 YLPSHPHHPAMMMHGGPPTHPGMTMSAQSPTMLNSVDPNVGGQVMDIHAQ
430 440 450 460 470
390 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 17:21:57 2016 done: Sat Nov 5 17:21:59 2016
Total Scan time: 9.320 Total Display time: 0.060
Function used was FASTA [36.3.4 Apr, 2011]