Result of FASTA (omim) for pFN21AB0469
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB0469, 515 aa
  1>>>pF1KB0469 515 - 515 aa - 515 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 10.7591+/-0.00047; mu= -4.3346+/- 0.029
 mean_var=384.5035+/-79.835, 0's: 0 Z-trim(121.5): 12  B-trim: 689 in 1/54
 Lambda= 0.065407
 statistics sampled from 38087 (38099) to 38087 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.447), width:  16
 Scan time:  9.600

The best scores are:                                      opt bits E(85289)
NP_003067 (OMIM: 601735) SWI/SNF-related matrix-as ( 515) 3483 342.7 1.5e-93
NP_620710 (OMIM: 601735) SWI/SNF-related matrix-as ( 474) 2857 283.6 8.6e-76
NP_001003802 (OMIM: 601737) SWI/SNF-related matrix ( 470) 2363 237.0 9.2e-62
NP_003069 (OMIM: 601737) SWI/SNF-related matrix-as ( 470) 2363 237.0 9.2e-62
NP_001003801 (OMIM: 601737) SWI/SNF-related matrix ( 483) 2356 236.4 1.5e-61
NP_001091896 (OMIM: 601736) SWI/SNF-related matrix ( 531) 2164 218.3 4.5e-56
XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 381) 2127 214.7   4e-55
NP_001317369 (OMIM: 601736) SWI/SNF-related matrix ( 483) 2110 213.2 1.4e-54
NP_001317368 (OMIM: 601736) SWI/SNF-related matrix ( 456) 2078 210.1 1.1e-53
XP_005269164 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 474) 2029 205.5 2.8e-52
XP_011536997 (OMIM: 601735) PREDICTED: SWI/SNF-rel ( 265) 1734 177.4 4.5e-44
XP_016868045 (OMIM: 601737) PREDICTED: SWI/SNF-rel ( 318) 1612 166.0 1.5e-40


>>NP_003067 (OMIM: 601735) SWI/SNF-related matrix-associ  (515 aa)
 initn: 3483 init1: 3483 opt: 3483  Z-score: 1800.5  bits: 342.7 E(85289): 1.5e-93
Smith-Waterman score: 3483; 100.0% identity (100.0% similar) in 515 aa overlap (1-515:1-515)

               10        20        30        40        50        60
pF1KB0 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_003 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
              430       440       450       460       470       480

              490       500       510     
pF1KB0 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
       :::::::::::::::::::::::::::::::::::
NP_003 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
              490       500       510     

>>NP_620710 (OMIM: 601735) SWI/SNF-related matrix-associ  (474 aa)
 initn: 2940 init1: 2857 opt: 2857  Z-score: 1481.7  bits: 283.6 E(85289): 8.6e-76
Smith-Waterman score: 3110; 92.0% identity (92.0% similar) in 515 aa overlap (1-515:1-474)

               10        20        30        40        50        60
pF1KB0 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB0 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB0 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB0 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KB0 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_620 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KB0 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
       :::                                         ::::::::::::::::
NP_620 DNK-----------------------------------------TMTDVVGNPEEERRAE
                                                       430         

              490       500       510     
pF1KB0 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
       :::::::::::::::::::::::::::::::::::
NP_620 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
     440       450       460       470    

>>NP_001003802 (OMIM: 601737) SWI/SNF-related matrix-ass  (470 aa)
 initn: 1822 init1: 1619 opt: 2363  Z-score: 1229.8  bits: 237.0 E(85289): 9.2e-62
Smith-Waterman score: 2363; 74.1% identity (88.0% similar) in 475 aa overlap (54-515:3-470)

            30        40        50             60        70        
pF1KB0 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
                                     ::  .:     ::::  :.::  ::  :::
NP_001                             MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
                                           10        20        30  

       80          90       100          110          120       130
pF1KB0 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
       ::  : :.:.:::::: .::. .:::  : : : : : : : : .   :...::..::::
NP_001 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
             40        50        60        70        80        90  

              140       150       160       170       180       190
pF1KB0 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
       :::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
NP_001 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
            100       110       120       130       140       150  

              200       210       220       230       240       250
pF1KB0 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
       :::: ::::..:..:::::::::.::.:        .:::::::::::::::::::::::
NP_001 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
            160       170       180              190       200     

              260       270       280       290       300       310
pF1KB0 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
       ::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
NP_001 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
         210       220       230       240       250       260     

              320       330       340       350       360       370
pF1KB0 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
       .: .:.::::::.::..::: :..:..  :::.::::.  :.::::::::: :::.::.:
NP_001 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
         270       280       290       300       310       320     

              380       390       400       410       420       430
pF1KB0 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET
       :.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.
NP_001 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
         330       340       350       360       370       380     

              440       450       460       470       480       490
pF1KB0 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEA
       ::::: ::.:::::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::
NP_001 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
         390       400       410       420       430       440     

              500       510     
pF1KB0 VCRYFYSKVQQRRQELEQALGIRNT
       : :::: :.:::::::::.: .:::
NP_001 VSRYFYCKIQQRRQELEQSLVVRNT
         450       460       470

>>NP_003069 (OMIM: 601737) SWI/SNF-related matrix-associ  (470 aa)
 initn: 1822 init1: 1619 opt: 2363  Z-score: 1229.8  bits: 237.0 E(85289): 9.2e-62
Smith-Waterman score: 2363; 74.1% identity (88.0% similar) in 475 aa overlap (54-515:3-470)

            30        40        50             60        70        
pF1KB0 AAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYP-----RPGMLPGSRMTPQGPSMGP
                                     ::  .:     ::::  :.::  ::  :::
NP_003                             MTPGLQHPPTVVQRPGMPSGARMPHQGAPMGP
                                           10        20        30  

       80          90       100          110          120       130
pF1KB0 PG--YGGNPSVRPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMAD
       ::  : :.:.:::::: .::. .:::  : : : : : : : : .   :...::..::::
NP_003 PGSPYMGSPAVRPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMAD
             40        50        60        70        80        90  

              140       150       160       170       180       190
pF1KB0 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTF
       :::::::::::::::::::::::::::::::::::.:::::::::.:::::::..:::::
NP_003 KILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTF
            100       110       120       130       140       150  

              200       210       220       230       240       250
pF1KB0 NPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYG
       :::: ::::..:..:::::::::.::.:        .:::::::::::::::::::::::
NP_003 NPAKPDAEDSDGSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYG
            160       170       180              190       200     

              260       270       280       290       300       310
pF1KB0 PDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQ
       ::::::::::: :::::::::::::::..::::.::::::::::::::::::::::.:::
NP_003 PDNHLVEWHRTPTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQ
         210       220       230       240       250       260     

              320       330       340       350       360       370
pF1KB0 TRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEP
       .: .:.::::::.::..::: :..:..  :::.::::.  :.::::::::: :::.::.:
NP_003 SRSAIVQALWQYVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDP
         270       280       290       300       310       320     

              380       390       400       410       420       430
pF1KB0 IIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIET
       :.:::::::::.::::::::::::::.. :: ::.:::::::.::::..::.:::::::.
NP_003 IVINHVISVDPSDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIES
         330       340       350       360       370       380     

              440       450       460       470       480       490
pF1KB0 INQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEA
       ::::: ::.:::::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::
NP_003 INQLKIQRDFMLSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEA
         390       400       410       420       430       440     

              500       510     
pF1KB0 VCRYFYSKVQQRRQELEQALGIRNT
       : :::: :.:::::::::.: .:::
NP_003 VSRYFYCKIQQRRQELEQSLVVRNT
         450       460       470

>>NP_001003801 (OMIM: 601737) SWI/SNF-related matrix-ass  (483 aa)
 initn: 1816 init1: 1619 opt: 2356  Z-score: 1226.1  bits: 236.4 E(85289): 1.5e-61
Smith-Waterman score: 2356; 75.2% identity (89.2% similar) in 464 aa overlap (60-515:27-483)

      30        40        50        60        70        80         
pF1KB0 PGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG--YGGNPSV
                                     ::::  :.::  ::  :::::  : :.:.:
NP_001     MAADEVAGGARKATKSKLFEFLVHGVRPGMPSGARMPHQGAPMGPPGSPYMGSPAV
                   10        20        30        40        50      

        90       100          110          120       130       140 
pF1KB0 RPGLAQSGMDQSRKR--PAPQQIQ-QVQQQAVQN---RNHNAKKKKMADKILPQRIRELV
       ::::: .::. .:::  : : : : : : : : .   :...::..:::::::::::::::
NP_001 RPGLAPAGMEPARKRAAPPPGQSQAQSQGQPVPTAPARSRSAKRRKMADKILPQRIRELV
         60        70        80        90       100       110      

             150       160       170       180       190       200 
pF1KB0 PESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGE
       ::::::::::::::::::::::::.:::::::::.:::::::..::::::::: ::::..
NP_001 PESQAYMDLLAFERKLDQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSD
        120       130       140       150       160       170      

             210       220       230       240       250       260 
pF1KB0 GTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT
       :..:::::::::.::.:        .::::::::::::::::::::::::::::::::::
NP_001 GSIASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRT
        180       190              200       210       220         

             270       280       290       300       310       320 
pF1KB0 ATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQ
        :::::::::::::::..::::.::::::::::::::::::::::.:::.: .:.:::::
NP_001 PTTQETDGFQVKRPGDLSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQ
     230       240       250       260       270       280         

             330       340       350       360       370       380 
pF1KB0 YIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDP
       :.::..::: :..:..  :::.::::.  :.::::::::: :::.::.::.:::::::::
NP_001 YVKTNRLQDSHDKEYINGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDP
     290       300       310       320       330       340         

             390       400       410       420       430       440 
pF1KB0 NDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFM
       .::::::::::::::.. :: ::.:::::::.::::..::.:::::::.::::: ::.::
NP_001 SDQKKTACYDIDVEVEEPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFM
     350       360       370       380       390       400         

             450       460       470       480       490       500 
pF1KB0 LSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQ
       :::.:::.:...: :.:: ::::.::::.:::::::::::: :::.:::: :::: :.::
NP_001 LSFSRDPKGYVQDLLRSQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQ
     410       420       430       440       450       460         

             510     
pF1KB0 RRQELEQALGIRNT
       :::::::.: .:::
NP_001 RRQELEQSLVVRNT
     470       480   

>>NP_001091896 (OMIM: 601736) SWI/SNF-related matrix-ass  (531 aa)
 initn: 2159 init1: 1539 opt: 2164  Z-score: 1127.7  bits: 218.3 E(85289): 4.5e-56
Smith-Waterman score: 2208; 63.6% identity (80.1% similar) in 544 aa overlap (1-515:1-531)

                   10        20        30        40              50
pF1KB0 MAARA--GFQ--SVAPSGGAGASGGAGAAAALGPGGTPGPPVRM-GPA-----PGQGLYR
       :..:.  ::    ..:.::: :.. ..     :::  ::: .:  :::     :: . .:
NP_001 MSGRGAGGFPLPPLSPGGGAVAAALGAPPPPAGPGMLPGPALRGPGPAGGVGGPGAAAFR
               10        20        30        40        50        60

                   60        70        80           90       100   
pF1KB0 SPM----PGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRPGLAQSGMDQSRKRP
        ::    :.: : :::: ::.::   : ..:::.   .:.   .:::.  . ::  ::: 
NP_001 -PMGPAGPAAQYQRPGMSPGNRMPMAGLQVGPPAGSPFGAAAPLRPGMPPTMMDPFRKR-
                70        80        90       100       110         

           110       120       130       140       150       160   
pF1KB0 APQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMR
           . :.:     .: .. :..:::::.::::::::::::::::::::::::::::: :
NP_001 --LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELVPESQAYMDLLAFERKLDQTIAR
        120       130        140       150       160       170     

           170       180       190       200                   210 
pF1KB0 KRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------------VASWELRV
       ::..::::.:.:. :::::::.:::::.:.:... :. ::            ::::::::
NP_001 KRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGGTPAGDKVASWELRV
         180       190       200        210       220       230    

             220       230       240       250       260       270 
pF1KB0 EGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQ
       ::.::.       : .:::::::::::::::::::.:::::::::::::  :::::::::
NP_001 EGKLLD-------DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVEWHRMPTTQETDGFQ
          240              250       260       270       280       

             280       290       300       310       320       330 
pF1KB0 VKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDP
       ::::::.::.::.:::::.::::.:::::::::::.::::: .:.:::: ::: ..::: 
NP_001 VKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQALWLYIKHNQLQDG
       290       300       310       320       330       340       

             340       350       360       370       380       390 
pF1KB0 HEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYD
       ::::.. :..:..:::   :..:::::..: .::. :.::.:::::::::::::::::::
NP_001 HEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVISVDPNDQKKTACYD
       350       360       370       380       390       400       

             400       410       420       430       440       450 
pF1KB0 IDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGF
       ::::::: ::.::..:: ::..:::::.:: :::::::.::::::::.:::::. ::: :
NP_001 IDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQRDFMLSFSTDPQDF
       410       420       430       440       450       460       

             460       470       480       490       500       510 
pF1KB0 INDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALG
       :..::.:: :::: .:::.::::::::: :: :::::::: :....:::::::::::.::
NP_001 IQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFAKVQQRRQELEQVLG
       470       480       490       500       510       520       

           
pF1KB0 IRNT
       :: :
NP_001 IRLT
       530 

>>XP_011514823 (OMIM: 601737) PREDICTED: SWI/SNF-related  (381 aa)
 initn: 1619 init1: 1619 opt: 2127  Z-score: 1110.6  bits: 214.7 E(85289): 4e-55
Smith-Waterman score: 2127; 79.6% identity (93.3% similar) in 388 aa overlap (128-515:1-381)

       100       110       120       130       140       150       
pF1KB0 QSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKL
                                     ::::::::::::::::::::::::::::::
XP_011                               MADKILPQRIRELVPESQAYMDLLAFERKL
                                             10        20        30

       160       170       180       190       200       210       
pF1KB0 DQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLE
       ::::::::.:::::::::.:::::::..::::::::: ::::..:..:::::::::.::.
XP_011 DQTIMRKRVDIQEALKRPMKQKRKLRLYISNTFNPAKPDAEDSDGSIASWELRVEGKLLD
               40        50        60        70        80        90

       220       230       240       250       260       270       
pF1KB0 DSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGD
              : .:::::::::::::::::::::::::::::::::: :::::::::::::::
XP_011 -------DPSKQKRKFSSFFKSLVIELDKDLYGPDNHLVEWHRTPTTQETDGFQVKRPGD
                     100       110       120       130       140   

       280       290       300       310       320       330       
pF1KB0 VNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFV
       ..::::.::::::::::::::::::::::.:::.: .:.::::::.::..::: :..:..
XP_011 LSVRCTLLLMLDYQPPQFKLDPRLARLLGLHTQSRSAIVQALWQYVKTNRLQDSHDKEYI
           150       160       170       180       190       200   

       340       350       360       370       380       390       
pF1KB0 ICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVD
         :::.::::.  :.::::::::: :::.::.::.:::::::::.::::::::::::::.
XP_011 NGDKYFQQIFDCPRLKFSEIPQRLTALLLPPDPIVINHVISVDPSDQKKTACYDIDVEVE
           210       220       230       240       250       260   

       400       410       420       430       440       450       
pF1KB0 DTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQ
       . :: ::.:::::::.::::..::.:::::::.::::: ::.:::::.:::.:...: :.
XP_011 EPLKGQMSSFLLSTANQQEISALDSKIHETIESINQLKIQRDFMLSFSRDPKGYVQDLLR
           270       280       290       300       310       320   

       460       470       480       490       500       510     
pF1KB0 SQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
       :: ::::.::::.:::::::::::: :::.:::: :::: :.:::::::::.: .:::
XP_011 SQSRDLKVMTDVAGNPEEERRAEFYHQPWSQEAVSRYFYCKIQQRRQELEQSLVVRNT
           330       340       350       360       370       380 

>>NP_001317369 (OMIM: 601736) SWI/SNF-related matrix-ass  (483 aa)
 initn: 2141 init1: 1539 opt: 2110  Z-score: 1100.6  bits: 213.2 E(85289): 1.4e-54
Smith-Waterman score: 2110; 67.4% identity (83.4% similar) in 476 aa overlap (55-515:20-483)

           30        40        50        60        70        80    
pF1KB0 AAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG---Y
                                     ::   :::: ::.::   : ..:::.   .
NP_001            MGRRVGVEVTPRWAPQKCQGARPQRPGMSPGNRMPMAGLQVGPPAGSPF
                          10        20        30        40         

              90       100       110       120       130       140 
pF1KB0 GGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELV
       :.   .:::.  . ::  :::     . :.:     .: .. :..:::::.:::::::::
NP_001 GAAAPLRPGMPPTMMDPFRKR---LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELV
      50        60        70           80         90       100     

             150       160       170       180       190       200 
pF1KB0 PESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGE
       :::::::::::::::::::: :::..::::.:.:. :::::::.:::::.:.:... :. 
NP_001 PESQAYMDLLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSA
         110       120       130       140       150       160     

                         210       220       230       240         
pF1KB0 GT------------VASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLY
       ::            ::::::::::.::.:        .:::::::::::::::::::.::
NP_001 GTAGTPGGTPAGDKVASWELRVEGKLLDDP-------SKQKRKFSSFFKSLVIELDKELY
          170       180       190              200       210       

     250       260       270       280       290       300         
pF1KB0 GPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHT
       :::::::::::  :::::::::::::::.::.::.:::::.::::.:::::::::::.::
NP_001 GPDNHLVEWHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHT
       220       230       240       250       260       270       

     310       320       330       340       350       360         
pF1KB0 QTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPE
       ::: .:.:::: ::: ..::: ::::.. :..:..:::   :..:::::..: .::. :.
NP_001 QTRAAIMQALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPD
       280       290       300       310       320       330       

     370       380       390       400       410       420         
pF1KB0 PIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIE
       ::.:::::::::::::::::::::::::: ::.::..:: ::..:::::.:: :::::::
NP_001 PIVINHVISVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIE
       340       350       360       370       380       390       

     430       440       450       460       470       480         
pF1KB0 TINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQE
       .::::::::.:::::. ::: ::..::.:: :::: .:::.::::::::: :: ::::::
NP_001 SINQLKTQRDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQE
       400       410       420       430       440       450       

     490       500       510     
pF1KB0 AVCRYFYSKVQQRRQELEQALGIRNT
       :: :....:::::::::::.:::: :
NP_001 AVGRHIFAKVQQRRQELEQVLGIRLT
       460       470       480   

>>NP_001317368 (OMIM: 601736) SWI/SNF-related matrix-ass  (456 aa)
 initn: 2109 init1: 1539 opt: 2078  Z-score: 1084.6  bits: 210.1 E(85289): 1.1e-53
Smith-Waterman score: 2078; 67.5% identity (83.8% similar) in 468 aa overlap (63-515:1-456)

             40        50        60        70        80            
pF1KB0 TPGPPVRMGPAPGQGLYRSPMPGAAYPRPGMLPGSRMTPQGPSMGPPG---YGGNPSVRP
                                     : ::.::   : ..:::.   .:.   .::
NP_001                               MSPGNRMPMAGLQVGPPAGSPFGAAAPLRP
                                             10        20        30

      90       100       110       120       130       140         
pF1KB0 GLAQSGMDQSRKRPAPQQIQQVQQQAVQNRNHNAKKKKMADKILPQRIRELVPESQAYMD
       :.  . ::  :::     . :.:     .: .. :..:::::.:::::::::::::::::
NP_001 GMPPTMMDPFRKR---LLVPQAQPPMPAQR-RGLKRRKMADKVLPQRIRELVPESQAYMD
               40           50         60        70        80      

     150       160       170       180       190       200         
pF1KB0 LLAFERKLDQTIMRKRLDIQEALKRPIKQKRKLRIFISNTFNPAKSDAEDGEGT------
       :::::::::::: :::..::::.:.:. :::::::.:::::.:.:... :. ::      
NP_001 LLAFERKLDQTIARKRMEIQEAIKKPLTQKRKLRIYISNTFSPSKAEG-DSAGTAGTPGG
         90       100       110       120       130        140     

                 210       220       230       240       250       
pF1KB0 ------VASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSLVIELDKDLYGPDNHLVE
             ::::::::::.::.       : .:::::::::::::::::::.::::::::::
NP_001 TPAGDKVASWELRVEGKLLD-------DPSKQKRKFSSFFKSLVIELDKELYGPDNHLVE
         150       160              170       180       190        

       260       270       280       290       300       310       
pF1KB0 WHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPRLARLLGIHTQTRPVIIQ
       :::  :::::::::::::::.::.::.:::::.::::.:::::::::::.::::: .:.:
NP_001 WHRMPTTQETDGFQVKRPGDLNVKCTLLLMLDHQPPQYKLDPRLARLLGVHTQTRAAIMQ
      200       210       220       230       240       250        

       320       330       340       350       360       370       
pF1KB0 ALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQRLHALLMPPEPIIINHVI
       ::: ::: ..::: ::::.. :..:..:::   :..:::::..: .::. :.::.:::::
NP_001 ALWLYIKHNQLQDGHEREYINCNRYFRQIFSCGRLRFSEIPMKLAGLLQHPDPIVINHVI
      260       270       280       290       300       310        

       380       390       400       410       420       430       
pF1KB0 SVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATLDNKIHETIETINQLKTQ
       ::::::::::::::::::::: ::.::..:: ::..:::::.:: :::::::.:::::::
NP_001 SVDPNDQKKTACYDIDVEVDDPLKAQMSNFLASTTNQQEIASLDVKIHETIESINQLKTQ
      320       330       340       350       360       370        

       440       450       460       470       480       490       
pF1KB0 REFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAEFYFQPWAQEAVCRYFYS
       :.:::::. ::: ::..::.:: :::: .:::.::::::::: :: :::::::: :....
NP_001 RDFMLSFSTDPQDFIQEWLRSQRRDLKIITDVIGNPEEERRAAFYHQPWAQEAVGRHIFA
      380       390       400       410       420       430        

       500       510     
pF1KB0 KVQQRRQELEQALGIRNT
       :::::::::::.:::: :
NP_001 KVQQRRQELEQVLGIRLT
      440       450      

>>XP_005269164 (OMIM: 601735) PREDICTED: SWI/SNF-related  (474 aa)
 initn: 3203 init1: 2001 opt: 2029  Z-score: 1059.4  bits: 205.5 E(85289): 2.8e-52
Smith-Waterman score: 3125; 92.0% identity (92.0% similar) in 515 aa overlap (1-515:1-474)

               10        20        30        40        50        60
pF1KB0 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 MAARAGFQSVAPSGGAGASGGAGAAAALGPGGTPGPPVRMGPAPGQGLYRSPMPGAAYPR
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB0 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGMLPGSRMTPQGPSMGPPGYGGNPSVRPGLAQSGMDQSRKRPAPQQIQQVQQQAVQNRN
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB0 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIKQKR
       :::::::::::::::::::::::::::::::::::::::::::::::::::::::::   
XP_005 HNAKKKKMADKILPQRIRELVPESQAYMDLLAFERKLDQTIMRKRLDIQEALKRPIK---
              130       140       150       160       170          

              190       200       210       220       230       240
pF1KB0 KLRIFISNTFNPAKSDAEDGEGTVASWELRVEGRLLEDSALSKYDATKQKRKFSSFFKSL
                                             ::::::::::::::::::::::
XP_005 --------------------------------------SALSKYDATKQKRKFSSFFKSL
                                             180       190         

              250       260       270       280       290       300
pF1KB0 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VIELDKDLYGPDNHLVEWHRTATTQETDGFQVKRPGDVNVRCTVLLMLDYQPPQFKLDPR
     200       210       220       230       240       250         

              310       320       330       340       350       360
pF1KB0 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LARLLGIHTQTRPVIIQALWQYIKTHKLQDPHEREFVICDKYLQQIFESQRMKFSEIPQR
     260       270       280       290       300       310         

              370       380       390       400       410       420
pF1KB0 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 LHALLMPPEPIIINHVISVDPNDQKKTACYDIDVEVDDTLKTQMNSFLLSTASQQEIATL
     320       330       340       350       360       370         

              430       440       450       460       470       480
pF1KB0 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DNKIHETIETINQLKTQREFMLSFARDPQGFINDWLQSQCRDLKTMTDVVGNPEEERRAE
     380       390       400       410       420       430         

              490       500       510     
pF1KB0 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
       :::::::::::::::::::::::::::::::::::
XP_005 FYFQPWAQEAVCRYFYSKVQQRRQELEQALGIRNT
     440       450       460       470    




515 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 17:01:36 2016 done: Sat Nov  5 17:01:37 2016
 Total Scan time:  9.600 Total Display time:  0.090

Function used was FASTA [36.3.4 Apr, 2011]
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