Result of FASTA (omim) for
pFN21AB5901
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB5901, 500 aa
1>>>pF1KB5901 500 - 500 aa - 500 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 6.0743+/-0.000292; mu= 14.9886+/- 0.019
mean_var=80.4732+/-15.953, 0's: 0 Z-trim(118.4): 18 B-trim: 0 in 0/53
Lambda= 0.142971
statistics sampled from 31297 (31315) to 31297 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.72), E-opt: 0.2 (0.367), width: 16
Scan time: 10.220
The best scores are: opt bits E(85289)
XP_016863661 (OMIM: 147183,614814) PREDICTED: reco ( 500) 3389 708.4 1.2e-203
NP_005340 (OMIM: 147183,614814) recombining bindin ( 500) 3389 708.4 1.2e-203
NP_056958 (OMIM: 147183,614814) recombining bindin ( 487) 3248 679.3 6.9e-195
NP_976028 (OMIM: 147183,614814) recombining bindin ( 485) 3240 677.6 2.1e-194
XP_011512142 (OMIM: 147183,614814) PREDICTED: reco ( 486) 3240 677.6 2.1e-194
XP_016863663 (OMIM: 147183,614814) PREDICTED: reco ( 486) 3240 677.6 2.1e-194
XP_016863664 (OMIM: 147183,614814) PREDICTED: reco ( 486) 3240 677.6 2.1e-194
NP_976029 (OMIM: 147183,614814) recombining bindin ( 486) 3240 677.6 2.1e-194
XP_005248218 (OMIM: 147183,614814) PREDICTED: reco ( 486) 3240 677.6 2.1e-194
XP_016863662 (OMIM: 147183,614814) PREDICTED: reco ( 486) 3240 677.6 2.1e-194
XP_016863660 (OMIM: 147183,614814) PREDICTED: reco ( 501) 3240 677.6 2.2e-194
XP_016863659 (OMIM: 147183,614814) PREDICTED: reco ( 506) 3240 677.6 2.2e-194
NP_001268378 (OMIM: 616104) recombining binding pr ( 516) 1634 346.4 1.2e-94
NP_001268377 (OMIM: 616104) recombining binding pr ( 471) 1425 303.2 1e-81
NP_055091 (OMIM: 616104) recombining binding prote ( 517) 1381 294.2 6.1e-79
XP_011526823 (OMIM: 616104) PREDICTED: recombining ( 455) 1327 283.0 1.2e-75
XP_011526825 (OMIM: 616104) PREDICTED: recombining ( 412) 1048 225.5 2.4e-58
XP_011526824 (OMIM: 616104) PREDICTED: recombining ( 436) 1048 225.5 2.5e-58
>>XP_016863661 (OMIM: 147183,614814) PREDICTED: recombin (500 aa)
initn: 3389 init1: 3389 opt: 3389 Z-score: 3776.9 bits: 708.4 E(85289): 1.2e-203
Smith-Waterman score: 3389; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
430 440 450 460 470 480
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
XP_016 YTNASTNSTSVTSSTATVVS
490 500
>>NP_005340 (OMIM: 147183,614814) recombining binding pr (500 aa)
initn: 3389 init1: 3389 opt: 3389 Z-score: 3776.9 bits: 708.4 E(85289): 1.2e-203
Smith-Waterman score: 3389; 100.0% identity (100.0% similar) in 500 aa overlap (1-500:1-500)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
310 320 330 340 350 360
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
370 380 390 400 410 420
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
430 440 450 460 470 480
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
NP_005 YTNASTNSTSVTSSTATVVS
490 500
>>NP_056958 (OMIM: 147183,614814) recombining binding pr (487 aa)
initn: 3248 init1: 3248 opt: 3248 Z-score: 3619.9 bits: 679.3 E(85289): 6.9e-195
Smith-Waterman score: 3248; 100.0% identity (100.0% similar) in 481 aa overlap (20-500:7-487)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
:::::::::::::::::::::::::::::::::::::::::
NP_056 MAPVVTGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_056 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
NP_056 YTNASTNSTSVTSSTATVVS
470 480
>>NP_976028 (OMIM: 147183,614814) recombining binding pr (485 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3611.0 bits: 677.6 E(85289): 2.1e-194
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:6-485)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
NP_976 MGGCRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
NP_976 YTNASTNSTSVTSSTATVVS
470 480
>>XP_011512142 (OMIM: 147183,614814) PREDICTED: recombin (486 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3611.0 bits: 677.6 E(85289): 2.1e-194
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:7-486)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
XP_011 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
XP_011 YTNASTNSTSVTSSTATVVS
470 480
>>XP_016863663 (OMIM: 147183,614814) PREDICTED: recombin (486 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3611.0 bits: 677.6 E(85289): 2.1e-194
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:7-486)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
XP_016 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
XP_016 YTNASTNSTSVTSSTATVVS
470 480
>>XP_016863664 (OMIM: 147183,614814) PREDICTED: recombin (486 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3611.0 bits: 677.6 E(85289): 2.1e-194
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:7-486)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
XP_016 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
XP_016 YTNASTNSTSVTSSTATVVS
470 480
>>NP_976029 (OMIM: 147183,614814) recombining binding pr (486 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3611.0 bits: 677.6 E(85289): 2.1e-194
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:7-486)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
NP_976 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_976 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
NP_976 YTNASTNSTSVTSSTATVVS
470 480
>>XP_005248218 (OMIM: 147183,614814) PREDICTED: recombin (486 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3611.0 bits: 677.6 E(85289): 2.1e-194
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:7-486)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
XP_005 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
XP_005 YTNASTNSTSVTSSTATVVS
470 480
>>XP_016863662 (OMIM: 147183,614814) PREDICTED: recombin (486 aa)
initn: 3240 init1: 3240 opt: 3240 Z-score: 3611.0 bits: 677.6 E(85289): 2.1e-194
Smith-Waterman score: 3240; 100.0% identity (100.0% similar) in 480 aa overlap (21-500:7-486)
10 20 30 40 50 60
pF1KB5 MDHTEGSPAEEPPAHAPSPGKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
::::::::::::::::::::::::::::::::::::::::
XP_016 MAWIKRKFGERPPPKRLTREAMRNYLKERGDQTVLILHAKVAQKSY
10 20 30 40
70 80 90 100 110 120
pF1KB5 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 GNEKRFFCPPPCVYLMGSGWKKKKEQMERDGCSEQESQPCAFIGIGNSDQEMQQLNLEGK
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB5 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 NYCTAKTLYISDSDKRKHFMLSVKMFYGNSDDIGVFLSKRIKVISKPSKKKQSLKNADLC
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB5 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 IASGTKVALFNRLRSQTVSTRYLHVEGGNFHASSQQWGAFFIHLLDDDESEGEEFTVRDG
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB5 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 YIHYGQTVKLVCSVTGMALPRLIIRKVDKQTALLDADDPVSQLHKCAFYLKDTERMYLCL
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB5 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 SQERIIQFQATPCPKEPNKEMINDGASWTIISTDKAEYTFYEGMGPVLAPVTPVPVVESL
290 300 310 320 330 340
370 380 390 400 410 420
pF1KB5 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 QLNGGGDVAMLELTGQNFTPNLRVWFGDVEAETMYRCGESMLCVVPDISAFREGWRWVRQ
350 360 370 380 390 400
430 440 450 460 470 480
pF1KB5 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_016 PVQVPVTLVRNDGIIYSTSLTFTYTPEPGPRPHCSAAGAILRANSSQVPPNESNTNSEGS
410 420 430 440 450 460
490 500
pF1KB5 YTNASTNSTSVTSSTATVVS
::::::::::::::::::::
XP_016 YTNASTNSTSVTSSTATVVS
470 480
500 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 15:29:18 2016 done: Sat Nov 5 15:29:19 2016
Total Scan time: 10.220 Total Display time: 0.100
Function used was FASTA [36.3.4 Apr, 2011]