Result of FASTA (omim) for
pFN21AB7916
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB7916, 345 aa
1>>>pF1KB7916 345 - 345 aa - 345 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 10.3336+/-0.000319; mu= -6.5049+/- 0.020
mean_var=285.7962+/-58.099, 0's: 0 Z-trim(124.5): 4 B-trim: 643 in 1/61
Lambda= 0.075866
statistics sampled from 46275 (46279) to 46275 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.828), E-opt: 0.2 (0.543), width: 16
Scan time: 9.820
The best scores are: opt bits E(85289)
NP_001305837 (OMIM: 600912) transcription factor 1 ( 345) 2477 283.8 3.8e-76
NP_009040 (OMIM: 600912) transcription factor 19 [ ( 345) 2477 283.8 3.8e-76
NP_001070979 (OMIM: 600912) transcription factor 1 ( 345) 2477 283.8 3.8e-76
>>NP_001305837 (OMIM: 600912) transcription factor 19 [H (345 aa)
initn: 2477 init1: 2477 opt: 2477 Z-score: 1488.1 bits: 283.8 E(85289): 3.8e-76
Smith-Waterman score: 2477; 99.7% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB7 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSAPPQRNRRKSVHRVLAELDDESEP
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNRRKSVHRVLAELDDESEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
250 260 270 280 290 300
310 320 330 340
pF1KB7 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
310 320 330 340
>>NP_009040 (OMIM: 600912) transcription factor 19 [Homo (345 aa)
initn: 2477 init1: 2477 opt: 2477 Z-score: 1488.1 bits: 283.8 E(85289): 3.8e-76
Smith-Waterman score: 2477; 99.7% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB7 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSAPPQRNRRKSVHRVLAELDDESEP
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_009 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNRRKSVHRVLAELDDESEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_009 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
250 260 270 280 290 300
310 320 330 340
pF1KB7 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
:::::::::::::::::::::::::::::::::::::::::::::
NP_009 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
310 320 330 340
>>NP_001070979 (OMIM: 600912) transcription factor 19 [H (345 aa)
initn: 2477 init1: 2477 opt: 2477 Z-score: 1488.1 bits: 283.8 E(85289): 3.8e-76
Smith-Waterman score: 2477; 99.7% identity (100.0% similar) in 345 aa overlap (1-345:1-345)
10 20 30 40 50 60
pF1KB7 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB7 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB7 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB7 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSAPPQRNRRKSVHRVLAELDDESEP
::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
NP_001 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNRRKSVHRVLAELDDESEP
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB7 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
250 260 270 280 290 300
310 320 330 340
pF1KB7 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
:::::::::::::::::::::::::::::::::::::::::::::
NP_001 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
310 320 330 340
345 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:37:22 2016 done: Sat Nov 5 14:37:23 2016
Total Scan time: 9.820 Total Display time: -0.010
Function used was FASTA [36.3.4 Apr, 2011]