FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7916, 345 aa
  1>>>pF1KB7916 345 - 345 aa - 345 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.9955+/-0.000796; mu= 1.6315+/- 0.048
 mean_var=252.6297+/-50.667, 0's: 0 Z-trim(117.0): 4  B-trim: 163 in 1/52
 Lambda= 0.080692
 statistics sampled from 17723 (17725) to 17723 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.83), E-opt: 0.2 (0.544), width:  16
 Scan time:  2.190

The best scores are:                                      opt bits E(32554)
CCDS43446.1 TCF19 gene_id:6941|Hs108|chr6          ( 345) 2477 300.6 1.2e-81


>>CCDS43446.1 TCF19 gene_id:6941|Hs108|chr6               (345 aa)
 initn: 2477 init1: 2477 opt: 2477  Z-score: 1579.1  bits: 300.6 E(32554): 1.2e-81
Smith-Waterman score: 2477; 99.7% identity (100.0% similar) in 345 aa overlap (1-345:1-345)

               10        20        30        40        50        60
pF1KB7 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 MLPCFQLLRIGGGRGGDLYTFHPPAGAGCTYRLGHRADLCDVALRPQQEPGLISGIHAEL
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 HAEPRGDDWRVSLEDHSSQGTLVNNVRLPRGHRLELSDGDLLTFGPEGPPGTSPSEFYFM
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB7 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 FQQVRVKPQDFAAITIPRSRGEARVGAGFRPMLPSQGAPQRPLSTFSPAPKATLILNSIG
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB7 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEVGTTPSAPPQRNRRKSVHRVLAELDDESEP
       ::::::::::::::::::::::::::::::.:::::::::::::::::::::::::::::
CCDS43 SLSKLRPQPLTFSPSWGGPKSLPVPAPPGEMGTTPSAPPQRNRRKSVHRVLAELDDESEP
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB7 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS43 PENPPPVLMEPRKKLRVDKAPLTPTGNRRGRPRKYPVSAPMAPPAVGGGEPCAAPCCCLP
              250       260       270       280       290       300

              310       320       330       340     
pF1KB7 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
       :::::::::::::::::::::::::::::::::::::::::::::
CCDS43 QEETVAWVQCDGCDVWFHVACVGCSIQAAREADFRCPGCRAGIQT
              310       320       330       340     




345 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:37:21 2016 done: Sat Nov  5 14:37:22 2016
 Total Scan time:  2.190 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]