FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB7911, 147 aa
  1>>>pF1KB7911 147 - 147 aa - 147 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.6872+/-0.000965; mu= -2.2962+/- 0.059
 mean_var=211.7485+/-41.971, 0's: 0 Z-trim(113.0): 10  B-trim: 132 in 1/50
 Lambda= 0.088138
 statistics sampled from 13637 (13643) to 13637 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.419), width:  16
 Scan time:  1.970

The best scores are:                                      opt bits E(32554)
CCDS6795.1 POLE3 gene_id:54107|Hs108|chr9          ( 147)  924 128.8 1.2e-30


>>CCDS6795.1 POLE3 gene_id:54107|Hs108|chr9               (147 aa)
 initn: 924 init1: 924 opt: 924  Z-score: 663.5  bits: 128.8 E(32554): 1.2e-30
Smith-Waterman score: 924; 100.0% identity (100.0% similar) in 147 aa overlap (1-147:1-147)

               10        20        30        40        50        60
pF1KB7 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 MAERPEDLNLPNAVITRIIKEALPDGVNISKEARSAISRAASVFVLYATSCANNFAMKGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB7 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS67 RKTLNASDVLSAMEEMEFQRFVTPLKEALEAYRREQKGKKEASEQKKKDKDKKTDSEEQD
               70        80        90       100       110       120

              130       140       
pF1KB7 KSRDEDNDEDEERLEEEEQNEEEEVDN
       :::::::::::::::::::::::::::
CCDS67 KSRDEDNDEDEERLEEEEQNEEEEVDN
              130       140       




147 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 14:35:22 2016 done: Sat Nov  5 14:35:23 2016
 Total Scan time:  1.970 Total Display time: -0.030

Function used was FASTA [36.3.4 Apr, 2011]