Result of FASTA (omim) for
pFN21AB6805
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6805, 159 aa
1>>>pF1KB6805 159 - 159 aa - 159 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8419+/-0.000353; mu= 14.3918+/- 0.022
mean_var=55.7960+/-11.323, 0's: 0 Z-trim(113.3): 12 B-trim: 1211 in 1/47
Lambda= 0.171701
statistics sampled from 22612 (22624) to 22612 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.659), E-opt: 0.2 (0.265), width: 16
Scan time: 4.590
The best scores are: opt bits E(85289)
XP_011530227 (OMIM: 147790) PREDICTED: immunoglobu ( 159) 1070 272.8 1.7e-73
XP_006714274 (OMIM: 147790) PREDICTED: immunoglobu ( 159) 1070 272.8 1.7e-73
XP_006714275 (OMIM: 147790) PREDICTED: immunoglobu ( 159) 1070 272.8 1.7e-73
XP_011530228 (OMIM: 147790) PREDICTED: immunoglobu ( 159) 1070 272.8 1.7e-73
NP_653247 (OMIM: 147790) immunoglobulin J chain pr ( 159) 1070 272.8 1.7e-73
>>XP_011530227 (OMIM: 147790) PREDICTED: immunoglobulin (159 aa)
initn: 1070 init1: 1070 opt: 1070 Z-score: 1440.7 bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
70 80 90 100 110 120
130 140 150
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
:::::::::::::::::::::::::::::::::::::::
XP_011 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
130 140 150
>>XP_006714274 (OMIM: 147790) PREDICTED: immunoglobulin (159 aa)
initn: 1070 init1: 1070 opt: 1070 Z-score: 1440.7 bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
70 80 90 100 110 120
130 140 150
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
:::::::::::::::::::::::::::::::::::::::
XP_006 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
130 140 150
>>XP_006714275 (OMIM: 147790) PREDICTED: immunoglobulin (159 aa)
initn: 1070 init1: 1070 opt: 1070 Z-score: 1440.7 bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
70 80 90 100 110 120
130 140 150
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
:::::::::::::::::::::::::::::::::::::::
XP_006 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
130 140 150
>>XP_011530228 (OMIM: 147790) PREDICTED: immunoglobulin (159 aa)
initn: 1070 init1: 1070 opt: 1070 Z-score: 1440.7 bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
70 80 90 100 110 120
130 140 150
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
:::::::::::::::::::::::::::::::::::::::
XP_011 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
130 140 150
>>NP_653247 (OMIM: 147790) immunoglobulin J chain precur (159 aa)
initn: 1070 init1: 1070 opt: 1070 Z-score: 1440.7 bits: 272.8 E(85289): 1.7e-73
Smith-Waterman score: 1070; 100.0% identity (100.0% similar) in 159 aa overlap (1-159:1-159)
10 20 30 40 50 60
pF1KB6 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 MKNHLLFWGVLAVFIKAVHVKAQEDERIVLVDNKCKCARITSRIIRSSEDPNEDIVERNI
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_653 RIIVPLNNRENISDPTSPLRTRFVYHLSDLCKKCDPTEVELDNQIVTATQSNICDEDSAT
70 80 90 100 110 120
130 140 150
pF1KB6 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
:::::::::::::::::::::::::::::::::::::::
NP_653 ETCYTYDRNKCYTAVVPLVYGGETKMVETALTPDACYPD
130 140 150
159 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 14:04:08 2016 done: Sat Nov 5 14:04:09 2016
Total Scan time: 4.590 Total Display time: -0.040
Function used was FASTA [36.3.4 Apr, 2011]