Result of FASTA (ccds) for pFN21AB6647
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB6647, 404 aa
  1>>>pF1KB6647 404 - 404 aa - 404 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 8.0582+/-0.000782; mu= 5.9879+/- 0.047
 mean_var=202.0396+/-40.732, 0's: 0 Z-trim(115.1): 44  B-trim: 0 in 0/53
 Lambda= 0.090231
 statistics sampled from 15585 (15623) to 15585 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.48), width:  16
 Scan time:  2.870

The best scores are:                                      opt bits E(32554)
CCDS4746.1 AGER gene_id:177|Hs108|chr6             ( 404) 2756 370.9 1.2e-102
CCDS56418.1 AGER gene_id:177|Hs108|chr6            ( 347) 2289 310.0 2.1e-84
CCDS75429.1 AGER gene_id:177|Hs108|chr6            ( 420) 1808 247.5 1.7e-65
CCDS4747.1 AGER gene_id:177|Hs108|chr6             ( 342) 1446 200.3 2.3e-51
CCDS56417.1 AGER gene_id:177|Hs108|chr6            ( 363) 1341 186.7 3.1e-47


>>CCDS4746.1 AGER gene_id:177|Hs108|chr6                  (404 aa)
 initn: 2756 init1: 2756 opt: 2756  Z-score: 1956.4  bits: 370.9 E(32554): 1.2e-102
Smith-Waterman score: 2756; 100.0% identity (100.0% similar) in 404 aa overlap (1-404:1-404)

               10        20        30        40        50        60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
              310       320       330       340       350       360

              370       380       390       400    
pF1KB6 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
       ::::::::::::::::::::::::::::::::::::::::::::
CCDS47 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
              370       380       390       400    

>>CCDS56418.1 AGER gene_id:177|Hs108|chr6                 (347 aa)
 initn: 2289 init1: 2289 opt: 2289  Z-score: 1628.7  bits: 310.0 E(32554): 2.1e-84
Smith-Waterman score: 2289; 100.0% identity (100.0% similar) in 331 aa overlap (1-331:1-331)

               10        20        30        40        50        60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
       :::::::::::::::::::::::::::::::                             
CCDS56 CVATHSSHGPQESRAVSISIIEPGEEGPTAGEGFDKVREAEDSPQHM             
              310       320       330       340                    

              370       380       390       400    
pF1KB6 ILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP

>>CCDS75429.1 AGER gene_id:177|Hs108|chr6                 (420 aa)
 initn: 1804 init1: 1804 opt: 1808  Z-score: 1289.2  bits: 247.5 E(32554): 1.7e-65
Smith-Waterman score: 2714; 96.2% identity (96.2% similar) in 420 aa overlap (1-404:1-420)

               10        20        30        40        50        60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
               70        80        90       100       110       120

              130       140                       150       160    
pF1KB6 PGKPEIVDSASELTAGVPNKV----------------GTCVSEGSYPAGTLSWHLDGKPL
       :::::::::::::::::::::                :::::::::::::::::::::::
CCDS75 PGKPEIVDSASELTAGVPNKVVEESRRSRKRPCEQEVGTCVSEGSYPAGTLSWHLDGKPL
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB6 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
              190       200       210       220       230       240

          230       240       250       260       270       280    
pF1KB6 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
              250       260       270       280       290       300

          290       300       310       320       330       340    
pF1KB6 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
              310       320       330       340       350       360

          350       360       370       380       390       400    
pF1KB6 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS75 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
              370       380       390       400       410       420

>>CCDS4747.1 AGER gene_id:177|Hs108|chr6                  (342 aa)
 initn: 1464 init1: 1440 opt: 1446  Z-score: 1035.7  bits: 200.3 E(32554): 2.3e-51
Smith-Waterman score: 1762; 94.9% identity (94.9% similar) in 274 aa overlap (1-274:1-260)

               10        20        30        40        50        60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
       :::::::::::::::::::::::::::::::::::::::::::::::::::::       
CCDS47 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKL-------
               10        20        30        40        50          

               70        80        90       100       110       120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
              :::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 -------GGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
                   60        70        80        90       100      

              130       140       150       160       170       180
pF1KB6 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PGKPEIVDSASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQTRRH
        110       120       130       140       150       160      

              190       200       210       220       230       240
pF1KB6 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 PETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAPIQPRVWEPVPLEEVQL
        170       180       190       200       210       220      

              250       260       270       280       290       300
pF1KB6 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSPVLILPEIGPQDQGTYS
       ::::::::::::::::::::::::::::::::::                          
CCDS47 VVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDVSDLERGAGRTRRGGANCRLCGRIRA
        230       240       250       260       270       280      

              310       320       330       340       350       360
pF1KB6 CVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALALGILGGLGTAALLIGV
                                                                   
CCDS47 GNSSPGPGDPGRPGDSRPAHWGHLVAKAATPRRGEEGPRKPGGRGGACRTESVGGT    
        290       300       310       320       330       340      

>>CCDS56417.1 AGER gene_id:177|Hs108|chr6                 (363 aa)
 initn: 1337 init1: 1337 opt: 1341  Z-score: 961.5  bits: 186.7 E(32554): 3.1e-47
Smith-Waterman score: 2247; 95.4% identity (95.4% similar) in 347 aa overlap (1-331:1-347)

               10        20        30        40        50        60
pF1KB6 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 MAAGTAVGAWVLVLSLWGAVVGAQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEA
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KB6 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 WKVLSPQGGGPWDSVARVLPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQI
               70        80        90       100       110       120

              130       140                       150       160    
pF1KB6 PGKPEIVDSASELTAGVPNKV----------------GTCVSEGSYPAGTLSWHLDGKPL
       :::::::::::::::::::::                :::::::::::::::::::::::
CCDS56 PGKPEIVDSASELTAGVPNKVVEESRRSRKRPCEQEVGTCVSEGSYPAGTLSWHLDGKPL
              130       140       150       160       170       180

          170       180       190       200       210       220    
pF1KB6 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 VPNEKGVSVKEQTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRHRALRTAP
              190       200       210       220       230       240

          230       240       250       260       270       280    
pF1KB6 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS56 IQPRVWEPVPLEEVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPSP
              250       260       270       280       290       300

          290       300       310       320       330       340    
pF1KB6 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGSVGGSGLGTLALA
       :::::::::::::::::::::::::::::::::::::::::::::::             
CCDS56 VLILPEIGPQDQGTYSCVATHSSHGPQESRAVSISIIEPGEEGPTAGEGFDKVREAEDSP
              310       320       330       340       350       360

          350       360       370       380       390       400    
pF1KB6 LGILGGLGTAALLIGVILWQRRQRRGEERKAPENQEEEEERAELNQSEEPEAGESSTGGP
                                                                   
CCDS56 QHM                                                         
                                                                   




404 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Sat Nov  5 11:14:44 2016 done: Sat Nov  5 11:14:45 2016
 Total Scan time:  2.870 Total Display time:  0.010

Function used was FASTA [36.3.4 Apr, 2011]
Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.com