Result of FASTA (omim) for
pFN21AB6607
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB6607, 409 aa
1>>>pF1KB6607 409 - 409 aa - 409 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 11.0985+/-0.000401; mu= -7.7901+/- 0.025
mean_var=329.3157+/-65.959, 0's: 0 Z-trim(121.8): 10 B-trim: 64 in 1/60
Lambda= 0.070675
statistics sampled from 38874 (38886) to 38874 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.745), E-opt: 0.2 (0.456), width: 16
Scan time: 6.400
The best scores are: opt bits E(85289)
NP_002865 (OMIM: 600062) UV excision repair protei ( 409) 2597 278.1 2.7e-74
NP_001231642 (OMIM: 600062) UV excision repair pro ( 388) 2459 264.0 4.5e-70
NP_001231653 (OMIM: 600062) UV excision repair pro ( 337) 2150 232.5 1.2e-60
NP_001257292 (OMIM: 600061) UV excision repair pro ( 308) 467 60.8 5.2e-09
NP_001257291 (OMIM: 600061) UV excision repair pro ( 362) 467 60.9 5.9e-09
NP_005044 (OMIM: 600061) UV excision repair protei ( 363) 467 60.9 5.9e-09
>>NP_002865 (OMIM: 600062) UV excision repair protein RA (409 aa)
initn: 2597 init1: 2597 opt: 2597 Z-score: 1454.7 bits: 278.1 E(85289): 2.7e-74
Smith-Waterman score: 2597; 100.0% identity (100.0% similar) in 409 aa overlap (1-409:1-409)
10 20 30 40 50 60
pF1KB6 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB6 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB6 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB6 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB6 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB6 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
310 320 330 340 350 360
370 380 390 400
pF1KB6 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_002 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
370 380 390 400
>>NP_001231642 (OMIM: 600062) UV excision repair protein (388 aa)
initn: 2459 init1: 2459 opt: 2459 Z-score: 1379.0 bits: 264.0 E(85289): 4.5e-70
Smith-Waterman score: 2459; 100.0% identity (100.0% similar) in 387 aa overlap (23-409:2-388)
10 20 30 40 50 60
pF1KB6 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
::::::::::::::::::::::::::::::::::::::
NP_001 MVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALK
10 20 30
70 80 90 100 110 120
pF1KB6 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALAPT
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB6 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFEDA
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB6 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAVVD
160 170 180 190 200 210
250 260 270 280 290 300
pF1KB6 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSLLP
220 230 240 250 260 270
310 320 330 340 350 360
pF1KB6 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMNYI
280 290 300 310 320 330
370 380 390 400
pF1KB6 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
:::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
340 350 360 370 380
>>NP_001231653 (OMIM: 600062) UV excision repair protein (337 aa)
initn: 2150 init1: 2150 opt: 2150 Z-score: 1209.6 bits: 232.5 E(85289): 1.2e-60
Smith-Waterman score: 2150; 100.0% identity (100.0% similar) in 337 aa overlap (73-409:1-337)
50 60 70 80 90 100
pF1KB6 GQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSS
::::::::::::::::::::::::::::::
NP_001 MVTKPKAVSTPAPATTQQSAPASTTAVTSS
10 20 30
110 120 130 140 150 160
pF1KB6 TTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 TTTTVAQAPTPVPALAPTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPT
40 50 60 70 80 90
170 180 190 200 210 220
pF1KB6 ATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ATDSTSGDSSRSNLFEDATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAV
100 110 120 130 140 150
230 240 250 260 270 280
pF1KB6 EYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQ
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 EYLLMGIPGDRESQAVVDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQ
160 170 180 190 200 210
290 300 310 320 330 340
pF1KB6 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGG
220 230 240 250 260 270
350 360 370 380 390 400
pF1KB6 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GGGSGGIAEAGSGHMNYIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLL
280 290 300 310 320 330
pF1KB6 QQNFDED
:::::::
NP_001 QQNFDED
>>NP_001257292 (OMIM: 600061) UV excision repair protein (308 aa)
initn: 965 init1: 409 opt: 467 Z-score: 282.7 bits: 60.8 E(85289): 5.2e-09
Smith-Waterman score: 1054; 50.9% identity (64.9% similar) in 407 aa overlap (3-409:5-308)
10 20 30 40 50
pF1KB6 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA
.:::::::::::: ..:.::::.::::::.:::.:::::::::::::::::.::.
NP_001 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALA
...:.::::::::::::: :: ::: : :. :
NP_001 IRDYRIDEKNFVVVMVTKTKA-------GQGTSAP-----------------PEASPTAA
70 80 90
120 130 140 150 160 170
pF1KB6 PTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE
: :. .:. :: ... :.: :: : ....:.:. : : : ... .::.:.: :
NP_001 PESS-TSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSSGSSGRE---E
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV
::.:.::::. ::.:.:::::::::::.:.::::::.::: ::::::: ::::. :
NP_001 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE----
160 170 180 190 200
240 250 260 270 280 290
pF1KB6 VDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL
: . :. : : :. :: .: : .::::::.:::::.:::.:::::.:
NP_001 --PEH----GSVQESQVSEQPATEAA-------GENPLEFLRDQPQFQNMRQVIQQNPAL
210 220 230 240 250
300 310 320 330 340 350
pF1KB6 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN
:::::::.:.:::::::
NP_001 LPALLQQLGQENPQLLQ-------------------------------------------
260 270
360 370 380 390 400
pF1KB6 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
::::::::.:::::::::::::::::::::.::::..
NP_001 --------------LKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
280 290 300
>>NP_001257291 (OMIM: 600061) UV excision repair protein (362 aa)
initn: 1398 init1: 400 opt: 467 Z-score: 281.7 bits: 60.9 E(85289): 5.9e-09
Smith-Waterman score: 1355; 59.2% identity (75.2% similar) in 407 aa overlap (3-409:5-362)
10 20 30 40 50
pF1KB6 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA
.:::::::::::: ..:.::::.::::::.:::.:::::::::::::::::.::.
NP_001 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALA
...:.::::::::::::: :: ::: : :. :
NP_001 IRDYRIDEKNFVVVMVTKTKA-------GQGTSAP-----------------PEASPTAA
70 80 90
120 130 140 150 160 170
pF1KB6 PTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE
: :. .:. :: ... :.: :: : ....:.:. : : : ... .::.:.: :
NP_001 PESS-TSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSSGSSGRE---E
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV
::.:.::::. ::.:.:::::::::::.:.::::::.::: ::::::: ::::. :
NP_001 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE----
160 170 180 190 200
240 250 260 270 280 290
pF1KB6 VDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL
: . :. : : :. : : .: .::::::.:::::.:::.:::::.:
NP_001 --PEH----GSVQESQVSEQPA--------TEAGENPLEFLRDQPQFQNMRQVIQQNPAL
210 220 230 240 250
300 310 320 330 340 350
pF1KB6 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN
:::::::.:.::::::::::.:::.:::::::: : . . : :.:.: . .::
NP_001 LPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE-VGAIGEEAP-QMN
260 270 280 290 300 310
360 370 380 390 400
pF1KB6 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
::::::::::::::::::::::.:::::::::::::::::::::.::::..
NP_001 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
320 330 340 350 360
>>NP_005044 (OMIM: 600061) UV excision repair protein RA (363 aa)
initn: 1399 init1: 400 opt: 467 Z-score: 281.7 bits: 60.9 E(85289): 5.9e-09
Smith-Waterman score: 1361; 59.5% identity (75.4% similar) in 407 aa overlap (3-409:5-363)
10 20 30 40 50
pF1KB6 MQVTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTA
.:::::::::::: ..:.::::.::::::.:::.:::::::::::::::::.::.
NP_005 MAVTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVP
10 20 30 40 50 60
60 70 80 90 100 110
pF1KB6 LKEYKIDEKNFVVVMVTKPKAVSTPAPATTQQSAPASTTAVTSSTTTTVAQAPTPVPALA
...:.::::::::::::: :: ::: : :. :
NP_005 IRDYRIDEKNFVVVMVTKTKA-------GQGTSAP-----------------PEASPTAA
70 80 90
120 130 140 150 160 170
pF1KB6 PTSTPASITPASATASSEPAPASAAKQEKPAEKPAETPVATSPTATDSTSGDSSRSNLFE
: :. .:. :: ... :.: :: : ....:.:. : : : ... .::.:.: :
NP_005 PESS-TSFPPAPTSGMSHPPPA-AREDKSPSEESAPTTSPESVSGSVPSSGSSGRE---E
100 110 120 130 140 150
180 190 200 210 220 230
pF1KB6 DATSALVTGQSYENMVTEIMSMGYEREQVIAALRASFNNPDRAVEYLLMGIPGDRESQAV
::.:.::::. ::.:.:::::::::::.:.::::::.::: ::::::: ::::. :
NP_005 DAASTLVTGSEYETMLTEIMSMGYERERVVAALRASYNNPHRAVEYLLTGIPGSPE----
160 170 180 190 200
240 250 260 270 280 290
pF1KB6 VDPPQAASTGAPQSSAVAAAAATTTATTTTTSSGGHPLEFLRNQPQFQQMRQIIQQNPSL
: . :. : : :. :: .: : .::::::.:::::.:::.:::::.:
NP_005 --PEH----GSVQESQVSEQPATEAA-------GENPLEFLRDQPQFQNMRQVIQQNPAL
210 220 230 240 250
300 310 320 330 340 350
pF1KB6 LPALLQQIGRENPQLLQQISQHQEHFIQMLNEPVQEAGGQGGGGGGGSGGIAEAGSGHMN
:::::::.:.::::::::::.:::.:::::::: : . . : :.:.: . .::
NP_005 LPALLQQLGQENPQLLQQISRHQEQFIQMLNEPPGELADISDVEGE-VGAIGEEAP-QMN
260 270 280 290 300 310
360 370 380 390 400
pF1KB6 YIQVTPQEKEAIERLKALGFPEGLVIQAYFACEKNENLAANFLLQQNFDED
::::::::::::::::::::::.:::::::::::::::::::::.::::..
NP_005 YIQVTPQEKEAIERLKALGFPESLVIQAYFACEKNENLAANFLLSQNFDDE
320 330 340 350 360
409 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Sat Nov 5 11:04:27 2016 done: Sat Nov 5 11:04:28 2016
Total Scan time: 6.400 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]