(Circular) (Six-base) MAPSORT of: pFN21AB7955.seq Check: 24 from: 1 to: 5473 pFN21AB7955 5473 bp With 182 enzymes: SgfI * April 15, 2010 09:29 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2200 2200 Size: 5473 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3283 278 Size: 53 83 186 936 1747 2468 Fragments arranged by size: 2468 1747 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2816 1937 Size: 879 4594 Acc65I G'GTAC_C Cuts at: 2794 2794 Size: 5473 AclI AA'CG_TT Cuts at: 1563 3600 3973 1563 Size: 2037 373 3063 Fragments arranged by size: 3063 2037 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3536 4920 5188 1632 Size: 1904 1384 268 1917 Fragments arranged by size: 1917 1904 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5276 AflIII A'CryG_T Cuts at: 1203 2050 4372 5349 1203 Size: 847 2322 977 1327 Fragments arranged by size: 2322 1327 977 847 AgeI A'CCGG_T Cuts at: 4304 4304 Size: 5473 AhdI GACnn_n'nnGTC Cuts at: 4202 4202 Size: 5473 AleI CACnn'nnGTG Cuts at: 1166 2321 1166 Size: 1155 4318 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5473 AlwNI CAG_nnn'CTG Cuts at: 3216 4788 3216 Size: 1572 3901 ApaLI G'TGCA_C Cuts at: 3530 4686 3530 Size: 1156 4317 ApoI r'AATT_y Cuts at: 1493 2128 2366 2782 3008 3160 5269 1493 Size: 635 238 416 226 152 2109 1697 Fragments arranged by size: 2109 1697 635 416 238 226 152 AseI AT'TA_AT Cuts at: 160 1032 4027 160 Size: 872 2995 1606 Fragments arranged by size: 2995 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5473 AvaI C'yCGr_G Cuts at: 1870 1943 2511 2798 1870 Size: 73 568 287 4545 Fragments arranged by size: 4545 568 287 73 BaeI ACnnnnGTAyCnnnnnnn_nnnnn' Cuts at: 2217 2250 2217 Size: 33 5440 BamHI G'GATC_C Cuts at: 2803 3170 2803 Size: 367 5106 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2794 4249 618 Size: 325 217 627 1007 1455 1842 Fragments arranged by size: 1842 1455 1007 627 325 217 BanII G_rGCy'C Cuts at: 1391 2792 1391 Size: 1401 4072 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4502 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3664 3698 1903 Size: 34 1727 34 3678 Fragments arranged by size: 3678 1727 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3365 4575 3365 Size: 1210 4263 BclI T'GATC_A Cuts at: 1548 1548 Size: 5473 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2009 4084 136 Size: 107 122 71 631 605 337 2075 1525 Fragments arranged by size: 2075 1525 631 605 337 122 107 71 BglII A'GATC_T Cuts at: 5468 5468 Size: 5473 BlpI GC'TnA_GC Cuts at: 2890 2890 Size: 5473 Bme1580I G_kGCm'C Cuts at: 1790 3534 4690 1790 Size: 1744 1156 2573 Fragments arranged by size: 2573 1744 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5473 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2609 3204 4162 Size: 416 53 83 399 24 1192 595 958 Cuts at: 4162 442 Size: 1753 Fragments arranged by size: 1753 1192 958 595 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5473 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4133 1239 Size: 2894 2579 Bpu10I CC'TnA_GC Cuts at: 2258 2258 Size: 5473 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3598 4463 4761 3598 Size: 865 298 4310 Fragments arranged by size: 4310 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2564 4136 882 Size: 617 1065 1572 2219 Fragments arranged by size: 2219 1572 1065 617 BsaAI yAC'GTr Cuts at: 493 1204 3264 493 Size: 711 2060 2702 Fragments arranged by size: 2702 2060 711 BsaBI GATnn'nnATC Cuts at: 5467 5467 Size: 5473 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3280 3662 4297 275 Size: 53 83 186 936 1747 382 635 1451 Fragments arranged by size: 1747 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 2707 3906 4304 4578 4725 5136 2707 Size: 1199 398 274 147 411 3044 Fragments arranged by size: 3044 1199 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2013 2043 1178 Size: 30 165 30 610 30 4608 Fragments arranged by size: 4608 610 165 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 5473 BseYI C'CCAG_C Cuts at: 2202 2692 4676 5172 2202 Size: 490 1984 496 2503 Fragments arranged by size: 2503 1984 496 490 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 4900 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2923 3684 4712 1540 Size: 275 186 922 761 1028 2301 Fragments arranged by size: 2301 1028 922 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3534 3619 4690 3534 Size: 85 1071 4317 Fragments arranged by size: 4317 1071 85 BsmI GAATG_Cn' Cuts at: 2984 3077 2984 Size: 93 5380 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2792 3534 3619 4690 1391 Size: 399 1002 742 85 1071 2174 Fragments arranged by size: 2174 1071 1002 742 399 85 BspEI T'CCGG_A Cuts at: 5136 5136 Size: 5473 BspHI T'CATG_A Cuts at: 3362 5092 3362 Size: 1730 3743 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2200 2828 844 Size: 1356 628 3489 Fragments arranged by size: 3489 1356 628 BsrBI CCG'CTC Cuts at: 1394 1823 3360 1394 Size: 429 1537 3507 Fragments arranged by size: 3507 1537 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3968 4142 65 Size: 1183 2720 174 1396 Fragments arranged by size: 2720 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4117 4304 1700 Size: 110 2307 187 2869 Fragments arranged by size: 2869 2307 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5473 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5473 BssSI C'ACGA_G Cuts at: 3533 4545 3533 Size: 1012 4461 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5473 BstBI TT'CG_AA Cuts at: 4277 4277 Size: 5473 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5473 BstXI CCAn_nnnn'nTGG Cuts at: 2700 2700 Size: 5473 BstYI r'GATC_y Cuts at: 1972 2803 3170 3555 3572 5024 5110 5122 5468 Size: 831 367 385 17 1452 86 12 346 Cuts at: 5468 1972 Size: 1977 Fragments arranged by size: 1977 1452 831 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2093 2093 Size: 5473 BtgI C'CryG_G Cuts at: 513 1065 2004 513 Size: 552 939 3982 Fragments arranged by size: 3982 939 552 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 2461 487 Size: 683 56 1235 3499 Fragments arranged by size: 3499 1235 683 56 BtsI GCAGTG_nn' Cuts at: 2082 2989 3783 3803 2082 Size: 907 794 20 3752 Fragments arranged by size: 3752 907 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5473 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5438 DraI TTT'AAA Cuts at: 2777 2777 Size: 5473 DraIII CAC_nnn'GTG Cuts at: 2377 2377 Size: 5473 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4480 809 Size: 507 3164 1802 Fragments arranged by size: 3164 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2920 3809 5438 Size: 54 1425 50 275 18 1090 889 1629 Cuts at: 5438 8 Size: 43 Fragments arranged by size: 1629 1425 1090 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2920 1537 Size: 275 1108 4090 Fragments arranged by size: 4090 1108 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2567 3403 1353 Size: 1214 836 3423 Fragments arranged by size: 3423 1214 836 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4060 4434 4580 387 Size: 1064 138 2471 374 146 1280 Fragments arranged by size: 2471 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 3536 4133 4920 5188 1239 Size: 393 1904 597 787 268 1524 Fragments arranged by size: 1904 1524 787 597 393 268 EcoRI G'AATT_C Cuts at: 2782 3160 2782 Size: 378 5095 FspI TGC'GCA Cuts at: 3979 3979 Size: 5473 HaeII r_GCGC'y Cuts at: 1678 4620 1678 Size: 2942 2531 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2013 2045 4114 4146 4188 Size: 32 135 32 441 32 2069 32 42 Cuts at: 4188 4220 1373 Size: 32 2626 Fragments arranged by size: 2626 2069 441 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2605 2817 3063 669 Size: 988 281 667 212 246 3079 Fragments arranged by size: 3079 988 667 281 246 212 HindIII A'AGCT_T Cuts at: 748 748 Size: 5473 HpaI GTT'AAC Cuts at: 3063 3063 Size: 5473 KpnI G_GTAC'C Cuts at: 2798 2798 Size: 5473 MfeI C'AATT_G Cuts at: 3072 3072 Size: 5473 MluI A'CGCG_T Cuts at: 5349 5349 Size: 5473 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4587 4771 1305 Size: 3282 184 2007 Fragments arranged by size: 3282 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3651 Fragments arranged by size: 3651 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2055 2321 3431 3790 3949 518 Size: 648 889 266 1110 359 159 2042 Fragments arranged by size: 2042 1110 889 648 359 266 159 MspA1I CmG'CkG Cuts at: 1606 2738 2889 3566 4714 4959 1606 Size: 1132 151 677 1148 245 2120 Fragments arranged by size: 2120 1148 1132 677 245 151 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 3982 Fragments arranged by size: 3982 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 5473 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5473 NotI GC'GGCC_GC Cuts at: 2920 2920 Size: 5473 NspI r_CATG'y Cuts at: 1132 1229 2054 2109 2210 2831 4376 1132 Size: 97 825 55 101 621 1545 2229 Fragments arranged by size: 2229 1545 825 621 101 97 55 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5473 PciI A'CATG_T Cuts at: 2050 4372 2050 Size: 2322 3151 PflMI CCAn_nnn'nTGG Cuts at: 1108 2067 1108 Size: 959 4514 PmeI GTTT'AAAC Cuts at: 2777 2777 Size: 5473 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3542 3574 5055 5087 3542 Size: 32 1481 32 3928 Fragments arranged by size: 3928 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5473 PsiI TTA'TAA Cuts at: 3043 3043 Size: 5473 PstI C_TGCA'G Cuts at: 830 2089 2825 830 Size: 1259 736 3478 Fragments arranged by size: 3478 1259 736 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5473 PvuII CAG'CTG Cuts at: 2738 2738 Size: 5473 SalI G'TCGA_C Cuts at: 1936 2815 1936 Size: 879 4594 SbfI CC_TGCA'GG Cuts at: 2825 2825 Size: 5473 ScaI AGT'ACT Cuts at: 2753 3721 5433 2753 Size: 968 1712 2793 Fragments arranged by size: 2793 1712 968 SfcI C'TryA_G Cuts at: 826 1045 2016 2085 2331 2821 3956 4637 4828 Size: 219 971 69 246 490 1135 681 191 Cuts at: 4828 826 Size: 1471 Fragments arranged by size: 1471 1135 971 681 490 246 219 191 69 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5473 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5473 SmaI CCC'GGG Cuts at: 1872 2800 1872 Size: 928 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3577 4478 4740 820 Size: 197 926 1634 901 262 1553 Fragments arranged by size: 1634 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3264 493 Size: 2771 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5473 SphI G_CATG'C Cuts at: 1132 2210 2831 1132 Size: 1078 621 3774 Fragments arranged by size: 3774 1078 621 SspI AAT'ATT Cuts at: 5 52 2285 3397 5 Size: 47 2233 1112 2081 Fragments arranged by size: 2233 2081 1112 47 StuI AGG'CCT Cuts at: 1517 2098 1517 Size: 581 4892 StyI C'CwwG_G Cuts at: 513 1065 2004 2066 2912 513 Size: 552 939 62 846 3074 Fragments arranged by size: 3074 939 846 552 62 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2216 3500 3517 3670 3855 4300 325 Size: 1255 636 1284 17 153 185 445 1498 Fragments arranged by size: 1498 1284 1255 636 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2751 3719 5431 Size: 274 80 33 51 1443 774 968 1712 Cuts at: 5431 96 Size: 138 Fragments arranged by size: 1712 1443 968 774 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5433 5465 5433 Size: 32 5441 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5473 XbaI T'CTAG_A Cuts at: 2809 2809 Size: 5473 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5473 XmaI C'CCGG_G Cuts at: 1870 2798 1870 Size: 928 4545 XmnI GAAnn'nnTTC Cuts at: 2657 3602 2657 Size: 945 4528 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3281 276 Size: 53 83 186 936 1747 2468 Fragments arranged by size: 2468 1747 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BaeI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DraIII DrdI EaeI EagI EarI EciI Eco57MI EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI ApaI AscI AvrII BbeI BbvCI BfrBI BplI BsiWI BsmBI BstZ17I EcoICRI EcoNI EcoO109I EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PpuMI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SexAI SfiI SfoI SrfI SwaI XcmI