FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB6661, 424 aa 1>>>pF1KB6661 424 - 424 aa - 424 aa Library: /omim/omim.rfq.tfa 60827320 residues in 85289 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.5784+/-0.000311; mu= 18.1384+/- 0.020 mean_var=98.5080+/-19.996, 0's: 0 Z-trim(119.1): 10 B-trim: 713 in 1/53 Lambda= 0.129223 statistics sampled from 32786 (32796) to 32786 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.709), E-opt: 0.2 (0.385), width: 16 Scan time: 9.870 The best scores are: opt bits E(85289) NP_000264 (OMIM: 300500,300808,300814) G-protein c ( 404) 2737 520.2 3.6e-147 XP_005274598 (OMIM: 300500,300808,300814) PREDICTE ( 386) 2528 481.2 1.9e-135 NP_001291451 (OMIM: 601970) vasoactive intestinal ( 358) 170 41.6 0.0038 XP_006716171 (OMIM: 601970) PREDICTED: vasoactive ( 392) 164 40.5 0.0089 XP_011514852 (OMIM: 601970) PREDICTED: vasoactive ( 439) 164 40.6 0.0096 XP_006716170 (OMIM: 601970) PREDICTED: vasoactive ( 455) 164 40.6 0.0099 >>NP_000264 (OMIM: 300500,300808,300814) G-protein coupl (404 aa) initn: 2737 init1: 2737 opt: 2737 Z-score: 2763.1 bits: 520.2 E(85289): 3.6e-147 Smith-Waterman score: 2737; 100.0% identity (100.0% similar) in 404 aa overlap (21-424:1-404) 10 20 30 40 50 60 pF1KB6 MTQAGRRGPGTPEPRPRTQPMASPRLGTFCCPTRDAATQLVLSFQPRAFHALCLGSGGLR :::::::::::::::::::::::::::::::::::::::: NP_000 MASPRLGTFCCPTRDAATQLVLSFQPRAFHALCLGSGGLR 10 20 30 40 70 80 90 100 110 120 pF1KB6 LALGLLQLLPGRRPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LALGLLQLLPGRRPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVD 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB6 SVSDMNHTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILLYHIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 SVSDMNHTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILLYHIM 110 120 130 140 150 160 190 200 210 220 230 240 pF1KB6 AWGLATLLCVEGAAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 AWGLATLLCVEGAAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAV 170 180 190 200 210 220 250 260 270 280 290 300 pF1KB6 ASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICWLSNIINESLLFYLEMQTDINGGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 ASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICWLSNIINESLLFYLEMQTDINGGS 230 240 250 260 270 280 310 320 330 340 350 360 pF1KB6 LKPVRTAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 LKPVRTAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGA 290 300 310 320 330 340 370 380 390 400 410 420 pF1KB6 HPSPLMPHENPASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPT :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: NP_000 HPSPLMPHENPASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPT 350 360 370 380 390 400 pF1KB6 HGDL :::: NP_000 HGDL >>XP_005274598 (OMIM: 300500,300808,300814) PREDICTED: G (386 aa) initn: 2528 init1: 2528 opt: 2528 Z-score: 2552.8 bits: 481.2 E(85289): 1.9e-135 Smith-Waterman score: 2528; 100.0% identity (100.0% similar) in 373 aa overlap (21-393:1-373) 10 20 30 40 50 60 pF1KB6 MTQAGRRGPGTPEPRPRTQPMASPRLGTFCCPTRDAATQLVLSFQPRAFHALCLGSGGLR :::::::::::::::::::::::::::::::::::::::: XP_005 MASPRLGTFCCPTRDAATQLVLSFQPRAFHALCLGSGGLR 10 20 30 40 70 80 90 100 110 120 pF1KB6 LALGLLQLLPGRRPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVD :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LALGLLQLLPGRRPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVD 50 60 70 80 90 100 130 140 150 160 170 180 pF1KB6 SVSDMNHTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILLYHIM :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 SVSDMNHTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVDAYLVIRRSAGLSTILLYHIM 110 120 130 140 150 160 190 200 210 220 230 240 pF1KB6 AWGLATLLCVEGAAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 AWGLATLLCVEGAAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAV 170 180 190 200 210 220 250 260 270 280 290 300 pF1KB6 ASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICWLSNIINESLLFYLEMQTDINGGS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 ASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICWLSNIINESLLFYLEMQTDINGGS 230 240 250 260 270 280 310 320 330 340 350 360 pF1KB6 LKPVRTAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGA :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: XP_005 LKPVRTAAKTTWFIMGILNPAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGA 290 300 310 320 330 340 370 380 390 400 410 420 pF1KB6 HPSPLMPHENPASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPT ::::::::::::::::::::::::::::::::: XP_005 HPSPLMPHENPASGKVSQVGGQTSDEALSMLSEDEMNARTLTKVGP 350 360 370 380 pF1KB6 HGDL >>NP_001291451 (OMIM: 601970) vasoactive intestinal poly (358 aa) initn: 143 init1: 86 opt: 170 Z-score: 177.4 bits: 41.6 E(85289): 0.0038 Smith-Waterman score: 170; 27.7% identity (53.6% similar) in 166 aa overlap (73-233:63-219) 50 60 70 80 90 100 pF1KB6 SFQPRAFHALCLGSGGLRLALGLLQLLPGRRPAGPGSPATSP-PASVRILRAAAACDLLG :::. : .: : : . . :. . NP_001 EEETKCAELLRSQTEKHKACSGVWDNITCWRPANVGETVTVPCPKVFSNFYSKAGNISKN 40 50 60 70 80 90 110 120 130 140 150 160 pF1KB6 CLGMVIRSTVWL-GFPNFVDSVSDMNHTEIWPAAFCVGSAMWIQLLYSACFWWLFCYAVD : : : ::.:::. . .. : . : : ...: : :.::. .. NP_001 C-----TSDGWSETFPDFVDACG-YSDPEDESKVGCKLSLVFLQYCIMANFFWLLVEGLY 100 110 120 130 140 170 180 190 200 210 pF1KB6 AY-LVIRRSAGLSTILLYHIMAWGLATLLCVEG--AAMLYYPSVSRCERGLDHAIPHYVT . :.. .: : ...::: :. :. . :: :: ... : ::..: .: NP_001 LHTLLVAMLPPRRCFLAYLLIGWGLPTV-CIGAWTAARLYLEDTG-CWDTNDHSVPWWV- 150 160 170 180 190 200 220 230 240 250 260 270 pF1KB6 MYLPLLLVLVANPILFQKTVTAVASLLKGRQGIYTENERRMGAVIKIRFFKIMLVLIICW . .:.:. ...: .:: NP_001 IRIPILISIIVNFVLFISIIRILLQKLTSPDVGGNDQSQYKRLAKSTLLLIPLFGVHYMV 210 220 230 240 250 260 >>XP_006716171 (OMIM: 601970) PREDICTED: vasoactive inte (392 aa) initn: 104 init1: 73 opt: 164 Z-score: 170.9 bits: 40.5 E(85289): 0.0089 Smith-Waterman score: 164; 21.9% identity (52.1% similar) in 292 aa overlap (103-383:104-382) 80 90 100 110 120 130 pF1KB6 RPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVDSVSDMNHTEIWP :....:. : . . : : : : XP_006 SLMSLATGSIILCLFRKLHCTRNYIHLNLFLSFILRAISVLVKDDVLYSSSGTLHCPDQP 80 90 100 110 120 130 140 150 160 170 180 pF1KB6 AAF--CVGSAMWIQLLYSACFWWLFCYAVDAY-LVIRRSAGLSTILLYHIMAWGLATLLC ... : : ...: : :.::. .. . :.. .: : ...::: :. : XP_006 SSWVGCKLSLVFLQYCIMANFFWLLVEGLYLHTLLVAMLPPRRCFLAYLLIGWGLPTV-C 140 150 160 170 180 190 190 200 210 220 230 240 pF1KB6 VEG--AAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAVASLLKGR . . :: :: ... : ::..: .: . .:.:. ...: .:: . . . . : . XP_006 IGAWTAARLYLEDTG-CWDTNDHSVPWWV-IRIPILISIIVNFVLFISIIRILLQKLTSP 200 210 220 230 240 250 250 260 270 280 290 300 pF1KB6 Q--GIYTENERRMG--AVIKIRFFKI-MLVLIICWLSNIINESLLFYLEMQTDINGGSLK . : . .:.. ... : .: . ..:. . .: . ..:: : . ::.. XP_006 DVGGNDQSQYKRLAKSTLLLIPLFGVHYMVFAVFPISISSKYQILFELCL------GSFQ 260 270 280 290 300 310 320 330 340 350 360 pF1KB6 PVRTAAKTTWFIMGILN-PAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGAH . .:. .. . . : . :. . : .::. .. : .: : : XP_006 GLVVAVLYCFLNSEVSSWPPWNQAQVLTCF-LRCCPAWCRSPHTCLS--SAGSSYCPGPH 310 320 330 340 350 360 370 380 390 400 410 420 pF1KB6 PSPLMPHENPASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPTH : . : ::: . .. .: . XP_006 -SSVSPSENPQRHRQTHSSGPSFQTPPSFRPP 370 380 390 >>XP_011514852 (OMIM: 601970) PREDICTED: vasoactive inte (439 aa) initn: 104 init1: 73 opt: 164 Z-score: 170.2 bits: 40.6 E(85289): 0.0096 Smith-Waterman score: 164; 21.9% identity (52.1% similar) in 292 aa overlap (103-383:151-429) 80 90 100 110 120 130 pF1KB6 RPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVDSVSDMNHTEIWP :....:. : . . : : : : XP_011 SLMSLATGSIILCLFRKLHCTRNYIHLNLFLSFILRAISVLVKDDVLYSSSGTLHCPDQP 130 140 150 160 170 180 140 150 160 170 180 pF1KB6 AAF--CVGSAMWIQLLYSACFWWLFCYAVDAY-LVIRRSAGLSTILLYHIMAWGLATLLC ... : : ...: : :.::. .. . :.. .: : ...::: :. : XP_011 SSWVGCKLSLVFLQYCIMANFFWLLVEGLYLHTLLVAMLPPRRCFLAYLLIGWGLPTV-C 190 200 210 220 230 190 200 210 220 230 240 pF1KB6 VEG--AAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAVASLLKGR . . :: :: ... : ::..: .: . .:.:. ...: .:: . . . . : . XP_011 IGAWTAARLYLEDTG-CWDTNDHSVPWWV-IRIPILISIIVNFVLFISIIRILLQKLTSP 240 250 260 270 280 290 250 260 270 280 290 300 pF1KB6 Q--GIYTENERRMG--AVIKIRFFKI-MLVLIICWLSNIINESLLFYLEMQTDINGGSLK . : . .:.. ... : .: . ..:. . .: . ..:: : . ::.. XP_011 DVGGNDQSQYKRLAKSTLLLIPLFGVHYMVFAVFPISISSKYQILFELCL------GSFQ 300 310 320 330 340 350 310 320 330 340 350 360 pF1KB6 PVRTAAKTTWFIMGILN-PAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGAH . .:. .. . . : . :. . : .::. .. : .: : : XP_011 GLVVAVLYCFLNSEVSSWPPWNQAQVLTCF-LRCCPAWCRSPHTCLS--SAGSSYCPGPH 360 370 380 390 400 370 380 390 400 410 420 pF1KB6 PSPLMPHENPASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPTH : . : ::: . .. .: . XP_011 -SSVSPSENPQRHRQTHSSGPSFQTPPSFRPP 410 420 430 >>XP_006716170 (OMIM: 601970) PREDICTED: vasoactive inte (455 aa) initn: 104 init1: 73 opt: 164 Z-score: 170.0 bits: 40.6 E(85289): 0.0099 Smith-Waterman score: 164; 21.9% identity (52.1% similar) in 292 aa overlap (103-383:167-445) 80 90 100 110 120 130 pF1KB6 RPAGPGSPATSPPASVRILRAAAACDLLGCLGMVIRSTVWLGFPNFVDSVSDMNHTEIWP :....:. : . . : : : : XP_006 SLMSLATGSIILCLFRKLHCTRNYIHLNLFLSFILRAISVLVKDDVLYSSSGTLHCPDQP 140 150 160 170 180 190 140 150 160 170 180 pF1KB6 AAF--CVGSAMWIQLLYSACFWWLFCYAVDAY-LVIRRSAGLSTILLYHIMAWGLATLLC ... : : ...: : :.::. .. . :.. .: : ...::: :. : XP_006 SSWVGCKLSLVFLQYCIMANFFWLLVEGLYLHTLLVAMLPPRRCFLAYLLIGWGLPTV-C 200 210 220 230 240 250 190 200 210 220 230 240 pF1KB6 VEG--AAMLYYPSVSRCERGLDHAIPHYVTMYLPLLLVLVANPILFQKTVTAVASLLKGR . . :: :: ... : ::..: .: . .:.:. ...: .:: . . . . : . XP_006 IGAWTAARLYLEDTG-CWDTNDHSVPWWV-IRIPILISIIVNFVLFISIIRILLQKLTSP 260 270 280 290 300 310 250 260 270 280 290 300 pF1KB6 Q--GIYTENERRMG--AVIKIRFFKI-MLVLIICWLSNIINESLLFYLEMQTDINGGSLK . : . .:.. ... : .: . ..:. . .: . ..:: : . ::.. XP_006 DVGGNDQSQYKRLAKSTLLLIPLFGVHYMVFAVFPISISSKYQILFELCL------GSFQ 320 330 340 350 360 310 320 330 340 350 360 pF1KB6 PVRTAAKTTWFIMGILN-PAQGFLLSLAFYGWTGCSLGFQSPRKEIQWESLTTSAAEGAH . .:. .. . . : . :. . : .::. .. : .: : : XP_006 GLVVAVLYCFLNSEVSSWPPWNQAQVLTCF-LRCCPAWCRSPHTCLS--SAGSSYCPGPH 370 380 390 400 410 420 370 380 390 400 410 420 pF1KB6 PSPLMPHENPASGKVSQVGGQTSDEALSMLSEGSDASTIEIHTASESCNKNEGDPALPTH : . : ::: . .. .: . XP_006 -SSVSPSENPQRHRQTHSSGPSFQTPPSFRPP 430 440 450 424 residues in 1 query sequences 60827320 residues in 85289 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Mon Nov 7 14:32:43 2016 done: Mon Nov 7 14:32:44 2016 Total Scan time: 9.870 Total Display time: 0.020 Function used was FASTA [36.3.4 Apr, 2011]