Result of FASTA (omim) for
pFN21AB9678
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB9678, 108 aa
1>>>pF1KB9678 108 - 108 aa - 108 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.7574+/-0.000243; mu= 13.7171+/- 0.015
mean_var=70.2548+/-14.768, 0's: 0 Z-trim(122.7): 70 B-trim: 2075 in 1/56
Lambda= 0.153016
statistics sampled from 41285 (41369) to 41285 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.841), E-opt: 0.2 (0.485), width: 16
Scan time: 4.890
The best scores are: opt bits E(85289)
NP_005412 (OMIM: 186855,613065) T-cell acute lymph ( 108) 727 167.9 2.8e-42
NP_001277335 (OMIM: 187040,613065) T-cell acute ly ( 172) 346 84.0 8.2e-17
XP_016857682 (OMIM: 187040,613065) PREDICTED: T-ce ( 172) 346 84.0 8.2e-17
NP_001277333 (OMIM: 187040,613065) T-cell acute ly ( 331) 346 84.3 1.3e-16
XP_016857677 (OMIM: 187040,613065) PREDICTED: T-ce ( 331) 346 84.3 1.3e-16
XP_016857676 (OMIM: 187040,613065) PREDICTED: T-ce ( 331) 346 84.3 1.3e-16
XP_016857679 (OMIM: 187040,613065) PREDICTED: T-ce ( 331) 346 84.3 1.3e-16
XP_016857678 (OMIM: 187040,613065) PREDICTED: T-ce ( 331) 346 84.3 1.3e-16
NP_003180 (OMIM: 187040,613065) T-cell acute lymph ( 331) 346 84.3 1.3e-16
XP_005271217 (OMIM: 187040,613065) PREDICTED: T-ce ( 331) 346 84.3 1.3e-16
NP_001277332 (OMIM: 187040,613065) T-cell acute ly ( 331) 346 84.3 1.3e-16
NP_001277334 (OMIM: 187040,613065) T-cell acute ly ( 331) 346 84.3 1.3e-16
XP_016857680 (OMIM: 187040,613065) PREDICTED: T-ce ( 331) 346 84.3 1.3e-16
NP_001274276 (OMIM: 187040,613065) T-cell acute ly ( 331) 346 84.3 1.3e-16
XP_005259969 (OMIM: 151440) PREDICTED: protein lyl ( 206) 330 80.5 1.1e-15
NP_005574 (OMIM: 151440) protein lyl-1 [Homo sapie ( 280) 330 80.7 1.3e-15
XP_016882306 (OMIM: 151440) PREDICTED: protein lyl ( 302) 330 80.7 1.4e-15
XP_016882305 (OMIM: 151440) PREDICTED: protein lyl ( 351) 330 80.8 1.6e-15
XP_011513798 (OMIM: 101400,123100,180750,601622) P ( 202) 209 53.8 1.2e-07
NP_000465 (OMIM: 101400,123100,180750,601622) twis ( 202) 209 53.8 1.2e-07
NP_476527 (OMIM: 200110,209885,227260,607556) twis ( 160) 207 53.3 1.3e-07
NP_001258822 (OMIM: 200110,209885,227260,607556) t ( 160) 207 53.3 1.3e-07
NP_835455 (OMIM: 607194,609069,615935) pancreas tr ( 328) 206 53.4 2.6e-07
NP_004600 (OMIM: 601010) transcription factor 15 [ ( 199) 196 50.9 8.4e-07
NP_005589 (OMIM: 162360) helix-loop-helix protein ( 133) 194 50.3 8.5e-07
NP_001104531 (OMIM: 162361) helix-loop-helix prote ( 135) 194 50.4 8.6e-07
NP_005590 (OMIM: 162361) helix-loop-helix protein ( 135) 194 50.4 8.6e-07
NP_660161 (OMIM: 609875) protein atonal homolog 7 ( 152) 186 48.6 3.2e-06
NP_068808 (OMIM: 602407) heart- and neural crest d ( 217) 186 48.8 4.1e-06
XP_006716679 (OMIM: 609067) PREDICTED: basic helix ( 201) 184 48.3 5.3e-06
NP_001073983 (OMIM: 609067) basic helix-loop-helix ( 201) 184 48.3 5.3e-06
NP_076924 (OMIM: 606624) neurogenin-2 [Homo sapien ( 272) 185 48.6 5.7e-06
NP_006152 (OMIM: 601726) neurogenin-1 [Homo sapien ( 237) 182 47.9 8.2e-06
XP_005268588 (OMIM: 602406) PREDICTED: heart- and ( 214) 177 46.8 1.6e-05
NP_004812 (OMIM: 602406) heart- and neural crest d ( 215) 177 46.8 1.6e-05
NP_005163 (OMIM: 601461) protein atonal homolog 1 ( 354) 169 45.2 8e-05
NP_066279 (OMIM: 604882,610370) neurogenin-3 [Homo ( 214) 162 43.5 0.00016
XP_016871769 (OMIM: 604882,610370) PREDICTED: neur ( 214) 162 43.5 0.00016
NP_803238 (OMIM: 608606) class A basic helix-loop- ( 189) 161 43.2 0.00017
NP_003197 (OMIM: 603306) transcription factor 21 [ ( 179) 155 41.9 0.00041
NP_938206 (OMIM: 603306) transcription factor 21 [ ( 179) 155 41.9 0.00041
NP_065697 (OMIM: 609154) achaete-scute homolog 3 [ ( 181) 154 41.6 0.00049
NP_982260 (OMIM: 609155) achaete-scute homolog 4 [ ( 173) 153 41.4 0.00055
NP_005089 (OMIM: 603628) musculin [Homo sapiens] ( 206) 153 41.5 0.00062
NP_005161 (OMIM: 601886) achaete-scute homolog 2 [ ( 193) 152 41.2 0.00069
NP_002491 (OMIM: 125853,601724,606394) neurogenic ( 356) 153 41.7 0.00093
NP_067014 (OMIM: 611635) neurogenic differentiatio ( 331) 151 41.2 0.0012
NP_006151 (OMIM: 601725) neurogenic differentiatio ( 382) 150 41.0 0.0015
NP_073565 (OMIM: 611513) neurogenic differentiatio ( 337) 148 40.6 0.0019
NP_004307 (OMIM: 100790,209880) achaete-scute homo ( 236) 144 39.5 0.0027
>>NP_005412 (OMIM: 186855,613065) T-cell acute lymphocyt (108 aa)
initn: 727 init1: 727 opt: 727 Z-score: 880.1 bits: 167.9 E(85289): 2.8e-42
Smith-Waterman score: 727; 100.0% identity (100.0% similar) in 108 aa overlap (1-108:1-108)
10 20 30 40 50 60
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGE
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MTRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPPDKKLSKNETLRLAMRYINFLVKVLGE
10 20 30 40 50 60
70 80 90 100
pF1KB9 QSLQQTGVAAQGNILGLFPQGPHLPGLEDRTLLENYQVPSPGPSHHIP
::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 QSLQQTGVAAQGNILGLFPQGPHLPGLEDRTLLENYQVPSPGPSHHIP
70 80 90 100
>>NP_001277335 (OMIM: 187040,613065) T-cell acute lympho (172 aa)
initn: 329 init1: 329 opt: 346 Z-score: 422.9 bits: 84.0 E(85289): 8.2e-17
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:27-98)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPP
..:.::::.::::::::::.:::.::::::::::
NP_001 MFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 DKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDRTLLE
:::::::: :::::.:::::.:.:..: . : : :
NP_001 DKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDD
70 80 90 100 110 120
100
pF1KB9 NYQVPSPGPSHHIP
NP_001 LLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
130 140 150 160 170
>>XP_016857682 (OMIM: 187040,613065) PREDICTED: T-cell a (172 aa)
initn: 329 init1: 329 opt: 346 Z-score: 422.9 bits: 84.0 E(85289): 8.2e-17
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:27-98)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIPTHPP
..:.::::.::::::::::.:::.::::::::::
XP_016 MFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIPTHPP
10 20 30 40 50 60
40 50 60 70 80 90
pF1KB9 DKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDRTLLE
:::::::: :::::.:::::.:.:..: . : : :
XP_016 DKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGAPPDD
70 80 90 100 110 120
100
pF1KB9 NYQVPSPGPSHHIP
XP_016 LLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
130 140 150 160 170
>>NP_001277333 (OMIM: 187040,613065) T-cell acute lympho (331 aa)
initn: 329 init1: 329 opt: 346 Z-score: 419.1 bits: 84.3 E(85289): 1.3e-16
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:186-257)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
..:.::::.::::::::::.:::.::::::
NP_001 DAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIP
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
:::::::::::: :::::.:::::.:.:..: . : : :
NP_001 THPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGA
220 230 240 250 260 270
100
pF1KB9 TLLENYQVPSPGPSHHIP
NP_001 PPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
280 290 300 310 320 330
>>XP_016857677 (OMIM: 187040,613065) PREDICTED: T-cell a (331 aa)
initn: 329 init1: 329 opt: 346 Z-score: 419.1 bits: 84.3 E(85289): 1.3e-16
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:186-257)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
..:.::::.::::::::::.:::.::::::
XP_016 DAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIP
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
:::::::::::: :::::.:::::.:.:..: . : : :
XP_016 THPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGA
220 230 240 250 260 270
100
pF1KB9 TLLENYQVPSPGPSHHIP
XP_016 PPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
280 290 300 310 320 330
>>XP_016857676 (OMIM: 187040,613065) PREDICTED: T-cell a (331 aa)
initn: 329 init1: 329 opt: 346 Z-score: 419.1 bits: 84.3 E(85289): 1.3e-16
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:186-257)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
..:.::::.::::::::::.:::.::::::
XP_016 DAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIP
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
:::::::::::: :::::.:::::.:.:..: . : : :
XP_016 THPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGA
220 230 240 250 260 270
100
pF1KB9 TLLENYQVPSPGPSHHIP
XP_016 PPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
280 290 300 310 320 330
>>XP_016857679 (OMIM: 187040,613065) PREDICTED: T-cell a (331 aa)
initn: 329 init1: 329 opt: 346 Z-score: 419.1 bits: 84.3 E(85289): 1.3e-16
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:186-257)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
..:.::::.::::::::::.:::.::::::
XP_016 DAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIP
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
:::::::::::: :::::.:::::.:.:..: . : : :
XP_016 THPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGA
220 230 240 250 260 270
100
pF1KB9 TLLENYQVPSPGPSHHIP
XP_016 PPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
280 290 300 310 320 330
>>XP_016857678 (OMIM: 187040,613065) PREDICTED: T-cell a (331 aa)
initn: 329 init1: 329 opt: 346 Z-score: 419.1 bits: 84.3 E(85289): 1.3e-16
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:186-257)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
..:.::::.::::::::::.:::.::::::
XP_016 DAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIP
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
:::::::::::: :::::.:::::.:.:..: . : : :
XP_016 THPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGA
220 230 240 250 260 270
100
pF1KB9 TLLENYQVPSPGPSHHIP
XP_016 PPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
280 290 300 310 320 330
>>NP_003180 (OMIM: 187040,613065) T-cell acute lymphocyt (331 aa)
initn: 329 init1: 329 opt: 346 Z-score: 419.1 bits: 84.3 E(85289): 1.3e-16
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:186-257)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
..:.::::.::::::::::.:::.::::::
NP_003 DAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIP
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
:::::::::::: :::::.:::::.:.:..: . : : :
NP_003 THPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGA
220 230 240 250 260 270
100
pF1KB9 TLLENYQVPSPGPSHHIP
NP_003 PPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
280 290 300 310 320 330
>>XP_005271217 (OMIM: 187040,613065) PREDICTED: T-cell a (331 aa)
initn: 329 init1: 329 opt: 346 Z-score: 419.1 bits: 84.3 E(85289): 1.3e-16
Smith-Waterman score: 346; 72.2% identity (88.9% similar) in 72 aa overlap (1-72:186-257)
10 20 30
pF1KB9 MTRKIFTNTRERWRQQNVNSAFAKLRKLIP
..:.::::.::::::::::.:::.::::::
XP_005 DAFPMFTTNNRVKRRPSPYEMEITDGPHTKVVRRIFTNSRERWRQQNVNGAFAELRKLIP
160 170 180 190 200 210
40 50 60 70 80 90
pF1KB9 THPPDKKLSKNETLRLAMRYINFLVKVLGEQSLQQTGVAAQGNILGLFPQGPHLPGLEDR
:::::::::::: :::::.:::::.:.:..: . : : :
XP_005 THPPDKKLSKNEILRLAMKYINFLAKLLNDQEEEGTQRAKTGKDPVVGAGGGGGGGGGGA
220 230 240 250 260 270
100
pF1KB9 TLLENYQVPSPGPSHHIP
XP_005 PPDDLLQDVLSPNSSCGSSLDGAASPDSYTEEPAPKHTARSLHPAMLPAADGAGPR
280 290 300 310 320 330
108 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 18:15:32 2016 done: Fri Nov 4 18:15:32 2016
Total Scan time: 4.890 Total Display time: -0.030
Function used was FASTA [36.3.4 Apr, 2011]