(Circular) (Six-base) MAPSORT of: pFN21AB9667.seq Check: 2453 from: 1 to: 5635 pFN21AB9667 5635 bp With 182 enzymes: SgfI * January 16, 2009 15:28 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3445 278 Size: 53 83 186 936 1909 2468 Fragments arranged by size: 2468 1909 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2978 1937 Size: 1041 4594 Acc65I G'GTAC_C Cuts at: 2956 2956 Size: 5635 AclI AA'CG_TT Cuts at: 1563 2824 3762 4135 1563 Size: 1261 938 373 3063 Fragments arranged by size: 3063 1261 938 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2039 3698 5082 5350 1632 Size: 407 1659 1384 268 1917 Fragments arranged by size: 1917 1659 1384 407 268 AfeI AGC'GCT Cuts at: 2768 2768 Size: 5635 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5438 AflIII A'CryG_T Cuts at: 1203 4534 5511 1203 Size: 3331 977 1327 Fragments arranged by size: 3331 1327 977 AgeI A'CCGG_T Cuts at: 4466 4466 Size: 5635 AhdI GACnn_n'nnGTC Cuts at: 4364 4364 Size: 5635 AleI CACnn'nnGTG Cuts at: 1166 2658 1166 Size: 1492 4143 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5635 AlwNI CAG_nnn'CTG Cuts at: 2017 3378 4950 2017 Size: 1361 1572 2702 Fragments arranged by size: 2702 1572 1361 ApaLI G'TGCA_C Cuts at: 2743 3692 4848 2743 Size: 949 1156 3530 Fragments arranged by size: 3530 1156 949 ApoI r'AATT_y Cuts at: 1493 2419 2513 2944 3170 3322 5431 1493 Size: 926 94 431 226 152 2109 1697 Fragments arranged by size: 2109 1697 926 431 226 152 94 AseI AT'TA_AT Cuts at: 160 1032 4189 160 Size: 872 3157 1606 Fragments arranged by size: 3157 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5635 AvaI C'yCGr_G Cuts at: 1870 1943 2646 2960 1870 Size: 73 703 314 4545 Fragments arranged by size: 4545 703 314 73 BamHI G'GATC_C Cuts at: 2965 3332 2965 Size: 367 5268 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2956 4411 618 Size: 325 217 627 1169 1455 1842 Fragments arranged by size: 1842 1455 1169 627 325 217 BanII G_rGCy'C Cuts at: 1391 2068 2693 2954 1391 Size: 677 625 261 4072 Fragments arranged by size: 4072 677 625 261 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 928 Size: 971 4664 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3826 3860 1903 Size: 34 1889 34 3678 Fragments arranged by size: 3678 1889 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3527 4737 3527 Size: 1210 4425 BclI T'GATC_A Cuts at: 1548 1548 Size: 5635 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4246 136 Size: 107 122 71 631 605 2574 1525 Fragments arranged by size: 2574 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 5630 5630 Size: 5635 BlpI GC'TnA_GC Cuts at: 2079 3052 2079 Size: 973 4662 Bme1580I G_kGCm'C Cuts at: 1790 2747 3696 4852 1790 Size: 957 949 1156 2573 Fragments arranged by size: 2573 1156 957 949 BmgBI CAC'GTC Cuts at: 1318 2656 1318 Size: 1338 4297 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2064 3366 4324 Size: 416 53 83 399 24 647 1302 958 Cuts at: 4324 442 Size: 1753 Fragments arranged by size: 1753 1302 958 647 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5635 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2487 2745 4295 1239 Size: 1248 258 1550 2579 Fragments arranged by size: 2579 1550 1248 258 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 2447 3760 4625 4923 2447 Size: 1313 865 298 3159 Fragments arranged by size: 3159 1313 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 2643 4298 882 Size: 617 1144 1655 2219 Fragments arranged by size: 2219 1655 1144 617 BsaAI yAC'GTr Cuts at: 493 1204 2800 3426 493 Size: 711 1596 626 2702 Fragments arranged by size: 2702 1596 711 626 BsaBI GATnn'nnATC Cuts at: 5629 5629 Size: 5635 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3442 3824 4459 275 Size: 53 83 186 936 1909 382 635 1451 Fragments arranged by size: 1909 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4068 4466 4740 4887 5298 4068 Size: 398 274 147 411 4405 Fragments arranged by size: 4405 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 1178 Size: 30 165 30 5410 Fragments arranged by size: 5410 165 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2621 1186 Size: 1435 4200 BseYI C'CCAG_C Cuts at: 4838 5334 4838 Size: 496 5139 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5062 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3085 3846 4874 1540 Size: 275 186 1084 761 1028 2301 Fragments arranged by size: 2301 1084 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 2693 2747 3696 3781 4852 2693 Size: 54 949 85 1071 3476 Fragments arranged by size: 3476 1071 949 85 54 BsiWI C'GTAC_G Cuts at: 2792 2792 Size: 5635 BsmI GAATG_Cn' Cuts at: 2231 3146 3239 2231 Size: 915 93 4627 Fragments arranged by size: 4627 915 93 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2068 2693 2747 2954 3696 3781 4852 Size: 399 278 625 54 207 742 85 1071 Cuts at: 4852 1391 Size: 2174 Fragments arranged by size: 2174 1071 742 625 399 278 207 85 54 BspEI T'CCGG_A Cuts at: 5298 5298 Size: 5635 BspHI T'CATG_A Cuts at: 3524 5254 3524 Size: 1730 3905 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2118 2990 844 Size: 1274 872 3489 Fragments arranged by size: 3489 1274 872 BsrBI CCG'CTC Cuts at: 1394 1823 3522 1394 Size: 429 1699 3507 Fragments arranged by size: 3507 1699 429 BsrDI GCAATG_nn' Cuts at: 65 1248 4130 4304 65 Size: 1183 2882 174 1396 Fragments arranged by size: 2882 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4279 4466 1700 Size: 110 2469 187 2869 Fragments arranged by size: 2869 2469 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5635 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5635 BssSI C'ACGA_G Cuts at: 3695 4707 3695 Size: 1012 4623 BstAPI GCAn_nnn'nTGC Cuts at: 794 2516 794 Size: 1722 3913 BstBI TT'CG_AA Cuts at: 2337 4439 2337 Size: 2102 3533 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5635 BstYI r'GATC_y Cuts at: 1972 2494 2965 3332 3717 3734 5186 5272 5284 Size: 522 471 367 385 17 1452 86 12 Cuts at: 5284 5630 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 522 471 385 367 346 86 17 12 Bsu36I CC'TnA_GG Cuts at: 2184 2184 Size: 5635 BtgI C'CryG_G Cuts at: 513 1065 513 Size: 552 5083 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4896 Fragments arranged by size: 4896 683 56 BtsI GCAGTG_nn' Cuts at: 3151 3945 3965 3151 Size: 794 20 4821 Fragments arranged by size: 4821 794 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5635 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5600 DraI TTT'AAA Cuts at: 2939 2939 Size: 5635 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4642 809 Size: 507 3326 1802 Fragments arranged by size: 3326 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3082 3971 5600 Size: 54 1425 50 275 18 1252 889 1629 Cuts at: 5600 8 Size: 43 Fragments arranged by size: 1629 1425 1252 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3082 1537 Size: 275 1270 4090 Fragments arranged by size: 4090 1270 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2056 2259 3565 1353 Size: 703 203 1306 3423 Fragments arranged by size: 3423 1306 703 203 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 2132 2451 4222 4596 4742 387 Size: 1064 138 543 319 1771 374 146 1280 Fragments arranged by size: 1771 1280 1064 543 374 319 146 138 EcoICRI GAG'CTC Cuts at: 2691 2691 Size: 5635 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2039 2487 2745 3698 4295 5082 5350 Size: 393 407 448 258 953 597 787 268 Cuts at: 5350 1239 Size: 1524 Fragments arranged by size: 1524 953 787 597 448 407 393 268 258 EcoNI CCTnn'n_nnAGG Cuts at: 2264 2264 Size: 5635 EcoRI G'AATT_C Cuts at: 2419 2944 3322 2419 Size: 525 378 4732 Fragments arranged by size: 4732 525 378 FspI TGC'GCA Cuts at: 2804 4141 2804 Size: 1337 4298 FspAI rTGC'GCAy Cuts at: 2804 2804 Size: 5635 HaeII r_GCGC'y Cuts at: 1678 2770 4782 1678 Size: 1092 2012 2531 Fragments arranged by size: 2531 2012 1092 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2192 2224 2611 2640 2643 Size: 32 135 32 620 32 387 29 3 Cuts at: 2643 2672 4276 4308 4350 4382 1373 Size: 29 1604 32 42 32 2626 Fragments arranged by size: 2626 1604 620 387 135 42 32 32 32 32 32 29 29 3 HincII GTy'rAC Cuts at: 669 1657 1938 2979 3225 669 Size: 988 281 1041 246 3079 Fragments arranged by size: 3079 1041 988 281 246 HindIII A'AGCT_T Cuts at: 748 2456 748 Size: 1708 3927 HpaI GTT'AAC Cuts at: 3225 3225 Size: 5635 KpnI G_GTAC'C Cuts at: 2960 2960 Size: 5635 MfeI C'AATT_G Cuts at: 3234 3234 Size: 5635 MluI A'CGCG_T Cuts at: 5511 5511 Size: 5635 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2392 4749 4933 1305 Size: 1087 2357 184 2007 Fragments arranged by size: 2357 2007 1087 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 3813 Fragments arranged by size: 3813 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2658 3593 3952 4111 518 Size: 648 1492 935 359 159 2042 Fragments arranged by size: 2042 1492 935 648 359 159 MspA1I CmG'CkG Cuts at: 1606 3051 3728 4876 5121 1606 Size: 1445 677 1148 245 2120 Fragments arranged by size: 2120 1445 1148 677 245 NcoI C'CATG_G Cuts at: 513 1065 513 Size: 552 5083 NdeI CA'TA_TG Cuts at: 387 387 Size: 5635 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5635 NotI GC'GGCC_GC Cuts at: 3082 3082 Size: 5635 NspI r_CATG'y Cuts at: 1132 1229 2903 2993 4538 1132 Size: 97 1674 90 1545 2229 Fragments arranged by size: 2229 1674 1545 97 90 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 5635 PciI A'CATG_T Cuts at: 4534 4534 Size: 5635 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5635 PfoI T'CCnGG_A Cuts at: 2259 2259 Size: 5635 PmeI GTTT'AAAC Cuts at: 2939 2939 Size: 5635 PmlI CAC'GTG Cuts at: 2800 2800 Size: 5635 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3704 3736 5217 5249 3704 Size: 32 1481 32 4090 Fragments arranged by size: 4090 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5635 PsiI TTA'TAA Cuts at: 3205 3205 Size: 5635 PstI C_TGCA'G Cuts at: 830 2115 2987 830 Size: 1285 872 3478 Fragments arranged by size: 3478 1285 872 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5635 SacI G_AGCT'C Cuts at: 2693 2693 Size: 5635 SalI G'TCGA_C Cuts at: 1936 2977 1936 Size: 1041 4594 SapI GCTCTTCn'nnn_ Cuts at: 2056 2056 Size: 5635 SbfI CC_TGCA'GG Cuts at: 2115 2987 2115 Size: 872 4763 ScaI AGT'ACT Cuts at: 3883 5595 3883 Size: 1712 3923 SfcI C'TryA_G Cuts at: 826 1045 2111 2983 4118 4799 4990 826 Size: 219 1066 872 1135 681 191 1471 Fragments arranged by size: 1471 1135 1066 872 681 219 191 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5635 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5635 SmaI CCC'GGG Cuts at: 1872 2962 1872 Size: 1090 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 2426 3739 4640 4902 820 Size: 197 926 483 1313 901 262 1553 Fragments arranged by size: 1553 1313 926 901 483 262 197 SnaBI TAC'GTA Cuts at: 493 3426 493 Size: 2933 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5635 SphI G_CATG'C Cuts at: 1132 2903 2993 1132 Size: 1771 90 3774 Fragments arranged by size: 3774 1771 90 SspI AAT'ATT Cuts at: 5 52 3559 5 Size: 47 3507 2081 Fragments arranged by size: 3507 2081 47 StuI AGG'CCT Cuts at: 1517 2052 1517 Size: 535 5100 StyI C'CwwG_G Cuts at: 513 1065 2286 3074 513 Size: 552 1221 788 3074 Fragments arranged by size: 3074 1221 788 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 2045 3662 3679 3832 4017 4462 325 Size: 1255 465 1617 17 153 185 445 1498 Fragments arranged by size: 1617 1498 1255 465 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2439 3881 5593 Size: 274 80 33 51 1443 462 1442 1712 Cuts at: 5593 96 Size: 138 Fragments arranged by size: 1712 1443 1442 462 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 5595 5627 5595 Size: 32 5603 Tth111I GACn'n_nGTC Cuts at: 1316 2654 1316 Size: 1338 4297 XbaI T'CTAG_A Cuts at: 2971 2971 Size: 5635 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5635 XmaI C'CCGG_G Cuts at: 1870 2960 1870 Size: 1090 4545 XmnI GAAnn'nnTTC Cuts at: 2678 2825 3764 2678 Size: 147 939 4549 Fragments arranged by size: 4549 939 147 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3443 276 Size: 53 83 186 936 1909 2468 Fragments arranged by size: 2468 1909 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AfeI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsiWI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI Bsu36I BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI EcoICRI Eco57MI EcoNI EcoRI FspI FspAI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PmlI PpiI PshAI PsiI PstI PvuI SacI SalI SapI SbfI ScaI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsmBI BstXI BstZ17I DraIII EcoO109I EcoRV FalI FseI KasI NaeI NarI NgoMIV NruI NsiI PacI PpuMI PspOMI PspXI PsrI PvuII RsrII SacII SanDI SexAI SfiI SfoI SrfI SwaI XcmI