FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 Query: pF1KB9548, 127 aa 1>>>pF1KB9548 127 - 127 aa - 127 aa Library: human.CCDS.faa 18511270 residues in 32554 sequences Statistics: Expectation_n fit: rho(ln(x))= 5.6331+/-0.000675; mu= 9.9785+/- 0.041 mean_var=80.9918+/-16.119, 0's: 0 Z-trim(111.4): 12 B-trim: 0 in 0/52 Lambda= 0.142513 statistics sampled from 12326 (12331) to 12326 sequences Algorithm: FASTA (3.7 Nov 2010) [optimized] Parameters: BL50 matrix (15:-5), open/ext: -10/-2 ktup: 2, E-join: 1 (0.762), E-opt: 0.2 (0.379), width: 16 Scan time: 1.680 The best scores are: opt bits E(32554) CCDS13963.1 POLR2F gene_id:5435|Hs108|chr22 ( 127) 842 181.7 1.1e-46 CCDS77673.1 POLR2F gene_id:5435|Hs108|chr22 ( 158) 650 142.3 9.8e-35 >>CCDS13963.1 POLR2F gene_id:5435|Hs108|chr22 (127 aa) initn: 842 init1: 842 opt: 842 Z-score: 951.8 bits: 181.7 E(32554): 1.1e-46 Smith-Waterman score: 842; 100.0% identity (100.0% similar) in 127 aa overlap (1-127:1-127) 10 20 30 40 50 60 pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS13 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV 70 80 90 100 110 120 pF1KB9 DELIITD ::::::: CCDS13 DELIITD >>CCDS77673.1 POLR2F gene_id:5435|Hs108|chr22 (158 aa) initn: 650 init1: 650 opt: 650 Z-score: 737.1 bits: 142.3 E(32554): 9.8e-35 Smith-Waterman score: 650; 99.0% identity (100.0% similar) in 100 aa overlap (1-100:1-100) 10 20 30 40 50 60 pF1KB9 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: CCDS77 MSDNEDNFDGDDFDDVEEDEGLDDLENAEEEGQENVEILPSGERPQANQKRITTPYMTKY 10 20 30 40 50 60 70 80 90 100 110 120 pF1KB9 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELKARKIPIIIRRYLPDGSYEDWGV :::::::::::::::::::::::::::::::::::::.:: CCDS77 ERARVLGTRALQIAMCAPVMVELEGETDPLLIAMKELNARSASEPPGEEPPWMDRGTRDE 70 80 90 100 110 120 pF1KB9 DELIITD CCDS77 HLPSCPGCPAVASNTRCCPPAACLPGISLSRRRRLREE 130 140 150 127 residues in 1 query sequences 18511270 residues in 32554 library sequences Tcomplib [36.3.4 Apr, 2011] (8 proc) start: Fri Nov 4 17:09:35 2016 done: Fri Nov 4 17:09:36 2016 Total Scan time: 1.680 Total Display time: -0.020 Function used was FASTA [36.3.4 Apr, 2011]