Result of FASTA (omim) for
pFN21AB8980
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8980, 376 aa
1>>>pF1KB8980 376 - 376 aa - 376 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.5036+/-0.000329; mu= 4.9659+/- 0.021
mean_var=229.2237+/-45.931, 0's: 0 Z-trim(123.1): 196 B-trim: 36 in 1/58
Lambda= 0.084712
statistics sampled from 42104 (42357) to 42104 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.799), E-opt: 0.2 (0.497), width: 16
Scan time: 9.580
The best scores are: opt bits E(85289)
NP_006726 (OMIM: 604685,612290) homeobox protein H ( 376) 2513 319.3 9.1e-87
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 866 118.0 3.4e-26
XP_005257332 (OMIM: 142967) PREDICTED: homeobox pr ( 247) 457 67.9 2.9e-11
XP_011509368 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 401 61.2 5.1e-09
XP_005246567 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 401 61.2 5.1e-09
XP_011509367 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 401 61.2 5.1e-09
XP_005246566 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 401 61.2 5.1e-09
XP_005246570 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 401 61.2 5.1e-09
XP_006712540 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 401 61.2 5.1e-09
NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [ ( 432) 401 61.2 5.1e-09
XP_005246568 (OMIM: 142980) PREDICTED: homeobox pr ( 432) 401 61.2 5.1e-09
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 394 60.4 9.3e-09
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 394 60.4 9.3e-09
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 394 60.4 9.3e-09
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 394 60.4 9.3e-09
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 394 60.4 9.3e-09
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 394 60.4 9.3e-09
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 394 60.4 9.3e-09
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 360 56.2 1.6e-07
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 356 55.6 1.8e-07
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 356 55.7 2e-07
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 356 55.7 2e-07
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 356 55.7 2.3e-07
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 356 55.7 2.3e-07
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 356 55.7 2.3e-07
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 356 55.7 2.3e-07
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 356 55.7 2.3e-07
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 356 55.7 2.3e-07
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 356 55.8 2.5e-07
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 356 55.9 2.8e-07
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 356 55.9 2.8e-07
XP_016880050 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 356 55.9 2.8e-07
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 356 55.9 2.8e-07
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 356 55.9 2.8e-07
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 356 55.9 2.8e-07
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 356 55.9 2.8e-07
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 356 55.9 2.8e-07
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 346 54.3 3.7e-07
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 334 52.9 1.1e-06
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 330 52.3 1.4e-06
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 325 51.8 2.3e-06
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 324 51.6 2.4e-06
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 324 51.6 2.4e-06
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 312 50.1 5.8e-06
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 314 50.5 6.5e-06
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 313 50.3 6.7e-06
NP_663632 (OMIM: 616542) GS homeobox 1 [Homo sapie ( 264) 310 49.9 7.9e-06
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 307 49.5 9e-06
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 306 49.4 1e-05
NP_573574 (OMIM: 616253) GS homeobox 2 [Homo sapie ( 304) 303 49.1 1.6e-05
>>NP_006726 (OMIM: 604685,612290) homeobox protein Hox-A (376 aa)
initn: 2513 init1: 2513 opt: 2513 Z-score: 1678.7 bits: 319.3 E(85289): 9.1e-87
Smith-Waterman score: 2513; 100.0% identity (100.0% similar) in 376 aa overlap (1-376:1-376)
10 20 30 40 50 60
pF1KB8 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 PGSHPRHGAGGRPKPSPAGSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAA
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 ATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALL
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 DLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVS
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 GALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPNCLST
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 MGQNCGAGLNNDSPEALEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDISADSLD
310 320 330 340 350 360
370
pF1KB8 FFTDTLTTIDLQHLNY
::::::::::::::::
NP_006 FFTDTLTTIDLQHLNY
370
>>NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [Homo (356 aa)
initn: 921 init1: 716 opt: 866 Z-score: 591.2 bits: 118.0 E(85289): 3.4e-26
Smith-Waterman score: 1037; 50.3% identity (67.5% similar) in 378 aa overlap (1-372:1-354)
10 20 30 40 50 60
pF1KB8 MNYEFEREIGFINSQPSLAECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLN
::.::::::::::::::::::::::: : .:::.:::: ::: :::::::.:::.
NP_002 MNFEFEREIGFINSQPSLAECLTSFPAVLETFQTSSIKESTLIPP---PPPFEQTFPSLQ
10 20 30 40 50
70 80 90 100 110
pF1KB8 PGSHP--RHGAGGRPKPSPAGSRGSPVPAGALQP-PEYPWMKEKKAAKKTALLPAAAAAA
::. : . : . .:: : : : : ::.:::::::.::: . .. . :
NP_002 PGASTLQRPRSQKRAEDGPALPPPPPPPLPAAPPAPEFPWMKEKKSAKKPSQSATSPSPA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 TAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA
..:. . . : ..: . ...:::.::::::::::::::::::::::::::::::::::
NP_002 ASAVPASGVGSPADGLGLPEAGGGGARRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 ALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSEKVEEDEEEKTLFEQA
:::::::::::::::::::::::::: .: ..: : .::: . . :: :
NP_002 ALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED---ICDPAEEP-----A
180 190 200 210 220
240 250 260 270 280 290
pF1KB8 LSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNEKNLKHFQHQSPTVPN
: .: : .. . . .:.. ..: . . : ... . . :.
NP_002 ASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-----------RLEGAGASSPG
230 240 250 260 270
300 310 320 330 340 350
pF1KB8 C-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDAVSPSLPGSLDSPVDI
: : : . : .: . . : : :.. :..::::::: ..:::: ::::::: .
NP_002 CALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGGLSPSLQGSLDSPVPF
280 290 300 310 320 330
360 370
pF1KB8 SADSLDFFTDTLTTIDLQHLNY
: . :::::.:: .::::
NP_002 SEEELDFFTSTLCAIDLQFP
340 350
>>XP_005257332 (OMIM: 142967) PREDICTED: homeobox protei (247 aa)
initn: 655 init1: 450 opt: 457 Z-score: 323.1 bits: 67.9 E(85289): 2.9e-11
Smith-Waterman score: 628; 49.0% identity (66.7% similar) in 243 aa overlap (133-372:24-245)
110 120 130 140 150 160
pF1KB8 AAKKTALLPAAAAAATAAATGPACLSHKESLEIADGSGGGSRRLRTAYTNTQLLELEKEF
: . ...:::.:::::::::::::::::::
XP_005 MLCPDPGRGCRLERERRKPKSNGLGLPEAGGGGARRLRTAYTNTQLLELEKEF
10 20 30 40 50
170 180 190 200 210 220
pF1KB8 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQCKENQNSEGKCK-SLEDSE
::::::::::::::::::::::::::::::::::::::::: .: ..: : .:::
XP_005 HFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKHKRQTQHREPPDGEPACPGALED--
60 70 80 90 100 110
230 240 250 260 270 280
pF1KB8 KVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQQQAPNGHNGDSQSFPVSPLTSNE
. . :: : : .: : .. . . .:.. ..: . . :
XP_005 -ICDPAEEP-----AASPGGPSASRAAW--EACCHPPEVVPGALSADPRPLAV-------
120 130 140 150
290 300 310 320 330
pF1KB8 KNLKHFQHQSPTVPNC-LSTMGQNCGAGLNNDSPEA-LEVPSLQDFSVFSTDSCLQLSDA
... . . :.: : : . : .: . . : : :.. :..::::::: .
XP_005 ----RLEGAGASSPGCALRGAGGLEPGPLPEDVFSGRQDSPFLPDLNFFAADSCLQLSGG
160 170 180 190 200 210
340 350 360 370
pF1KB8 VSPSLPGSLDSPVDISADSLDFFTDTLTTIDLQHLNY
.:::: ::::::: .: . :::::.:: .::::
XP_005 LSPSLQGSLDSPVPFSEEELDFFTSTLCAIDLQFP
220 230 240
>>XP_011509368 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 575 init1: 359 opt: 401 Z-score: 283.0 bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)
20 30 40 50 60 70
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
::: :.: :.: : . .:: : .:
XP_011 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
100 110 120 130 140
80 90 100 110 120 130
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
:. .. ..... .:::::.. .: .: . :: : .
XP_011 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
150 160 170 180
140 150 160 170 180 190
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
: .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_011 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
:.. . :
XP_011 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
250 260 270 280 290 300
>>XP_005246567 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 575 init1: 359 opt: 401 Z-score: 283.0 bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)
20 30 40 50 60 70
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
::: :.: :.: : . .:: : .:
XP_005 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
100 110 120 130 140
80 90 100 110 120 130
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
:. .. ..... .:::::.. .: .: . :: : .
XP_005 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
150 160 170 180
140 150 160 170 180 190
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
: .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_005 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
:.. . :
XP_005 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
250 260 270 280 290 300
>>XP_011509367 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 575 init1: 359 opt: 401 Z-score: 283.0 bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)
20 30 40 50 60 70
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
::: :.: :.: : . .:: : .:
XP_011 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
100 110 120 130 140
80 90 100 110 120 130
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
:. .. ..... .:::::.. .: .: . :: : .
XP_011 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
150 160 170 180
140 150 160 170 180 190
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
: .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_011 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
:.. . :
XP_011 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
250 260 270 280 290 300
>>XP_005246566 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 575 init1: 359 opt: 401 Z-score: 283.0 bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)
20 30 40 50 60 70
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
::: :.: :.: : . .:: : .:
XP_005 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
100 110 120 130 140
80 90 100 110 120 130
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
:. .. ..... .:::::.. .: .: . :: : .
XP_005 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
150 160 170 180
140 150 160 170 180 190
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
: .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_005 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
:.. . :
XP_005 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
250 260 270 280 290 300
>>XP_005246570 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 575 init1: 359 opt: 401 Z-score: 283.0 bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)
20 30 40 50 60 70
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
::: :.: :.: : . .:: : .:
XP_005 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
100 110 120 130 140
80 90 100 110 120 130
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
:. .. ..... .:::::.. .: .: . :: : .
XP_005 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
150 160 170 180
140 150 160 170 180 190
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
: .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_005 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
:.. . :
XP_005 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
250 260 270 280 290 300
>>XP_006712540 (OMIM: 142980) PREDICTED: homeobox protei (432 aa)
initn: 575 init1: 359 opt: 401 Z-score: 283.0 bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)
20 30 40 50 60 70
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
::: :.: :.: : . .:: : .:
XP_006 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
100 110 120 130 140
80 90 100 110 120 130
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
:. .. ..... .:::::.. .: .: . :: : .
XP_006 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
150 160 170 180
140 150 160 170 180 190
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
: .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
XP_006 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
:.. . :
XP_006 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
250 260 270 280 290 300
>>NP_008829 (OMIM: 142980) homeobox protein Hox-D3 [Homo (432 aa)
initn: 575 init1: 359 opt: 401 Z-score: 283.0 bits: 61.2 E(85289): 5.1e-09
Smith-Waterman score: 435; 44.6% identity (66.9% similar) in 157 aa overlap (49-205:121-256)
20 30 40 50 60 70
pF1KB8 AECLTSFPPVADTFQSSSIKTSTLSHSTLIPPPFEQTIPSLNPGSHPRHGAGGRPKPSPA
::: :.: :.: : . .:: : .:
NP_008 MRPGTGNSQGGGGGSQPPGLNSEQQPPQPPPPP-----PTLPPSS-PTNPGGGVPAKKPK
100 110 120 130 140
80 90 100 110 120 130
pF1KB8 GSRGSPVPAGALQPPEYPWMKEKKAAKKTALLPAAAAAATAAATGPACLSHKESLEIADG
:. .. ..... .:::::.. .: .: . :: : .
NP_008 GGPNASSSSATISKQIFPWMKESRQNSKQK---------------NSCATAGESCEDKSP
150 160 170 180
140 150 160 170 180 190
pF1KB8 SGGGSRRLRTAYTNTQLLELEKEFHFNKYLCRPRRVEIAALLDLTERQVKVWFQNRRMKH
: .:.:.:::::..::.:::::::::.:::::::::.: ::.:::::.:.::::::::.
NP_008 PGPASKRVRTAYTSAQLVELEKEFHFNRYLCRPRRVEMANLLNLTERQIKIWFQNRRMKY
190 200 210 220 230 240
200 210 220 230 240 250
pF1KB8 KRQTQCKENQNSEGKCKSLEDSEKVEEDEEEKTLFEQALSVSGALLEREGYTFQQNALSQ
:.. . :
NP_008 KKDQKAKGILHSPASQSPERSPPLGGAAGHVAYSGQLPPVPGLAYDAPSPPAFAKSQPNM
250 260 270 280 290 300
376 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:49:31 2016 done: Fri Nov 4 16:49:32 2016
Total Scan time: 9.580 Total Display time: 0.010
Function used was FASTA [36.3.4 Apr, 2011]