Result of FASTA (omim) for
pFN21AB8935
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8935, 284 aa
1>>>pF1KB8935 284 - 284 aa - 284 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.0102+/-0.000362; mu= 8.3193+/- 0.023
mean_var=117.4477+/-25.384, 0's: 0 Z-trim(115.8): 40 B-trim: 1411 in 1/56
Lambda= 0.118346
statistics sampled from 26438 (26478) to 26438 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.672), E-opt: 0.2 (0.31), width: 16
Scan time: 6.270
The best scores are: opt bits E(85289)
NP_958845 (OMIM: 601425) transcription elongation ( 280) 1739 307.5 1.8e-83
NP_006747 (OMIM: 601425) transcription elongation ( 301) 1731 306.2 4.9e-83
XP_011515880 (OMIM: 601425) PREDICTED: transcripti ( 266) 1709 302.4 5.9e-82
XP_006716530 (OMIM: 601425) PREDICTED: transcripti ( 254) 1639 290.4 2.3e-78
XP_016883525 (OMIM: 604784) PREDICTED: transcripti ( 272) 1148 206.6 4.1e-53
NP_942016 (OMIM: 604784) transcription elongation ( 272) 1148 206.6 4.1e-53
XP_016883526 (OMIM: 604784) PREDICTED: transcripti ( 272) 1148 206.6 4.1e-53
NP_003186 (OMIM: 604784) transcription elongation ( 299) 1148 206.7 4.5e-53
XP_011527329 (OMIM: 604784) PREDICTED: transcripti ( 297) 1127 203.1 5.3e-52
XP_011527324 (OMIM: 604784) PREDICTED: transcripti ( 297) 1127 203.1 5.3e-52
XP_011527325 (OMIM: 604784) PREDICTED: transcripti ( 297) 1127 203.1 5.3e-52
XP_005260286 (OMIM: 604784) PREDICTED: transcripti ( 324) 1127 203.1 5.7e-52
NP_003187 (OMIM: 604128) transcription elongation ( 348) 843 154.6 2.4e-37
XP_016857693 (OMIM: 604128) PREDICTED: transcripti ( 327) 836 153.4 5.2e-37
XP_006710927 (OMIM: 604128) PREDICTED: transcripti ( 351) 822 151.0 2.9e-36
XP_011540355 (OMIM: 604128) PREDICTED: transcripti ( 364) 822 151.0 3e-36
XP_016857692 (OMIM: 604128) PREDICTED: transcripti ( 450) 822 151.1 3.6e-36
XP_016857690 (OMIM: 604128) PREDICTED: transcripti ( 466) 822 151.1 3.7e-36
XP_016857689 (OMIM: 604128) PREDICTED: transcripti ( 487) 822 151.1 3.8e-36
XP_016857691 (OMIM: 604128) PREDICTED: transcripti ( 466) 815 149.9 8.4e-36
XP_016866115 (OMIM: 607789) PREDICTED: PHD finger (1308) 238 51.6 9e-06
XP_005248760 (OMIM: 607789) PREDICTED: PHD finger (1308) 238 51.6 9e-06
XP_005248759 (OMIM: 607789) PREDICTED: PHD finger (1951) 238 51.7 1.3e-05
NP_001277188 (OMIM: 607789) PHD finger protein 3 i (1951) 238 51.7 1.3e-05
XP_005248758 (OMIM: 607789) PREDICTED: PHD finger (2039) 238 51.8 1.3e-05
NP_055968 (OMIM: 607789) PHD finger protein 3 isof (2039) 238 51.8 1.3e-05
XP_006715489 (OMIM: 607789) PREDICTED: PHD finger (2039) 238 51.8 1.3e-05
XP_011533950 (OMIM: 607789) PREDICTED: PHD finger (2048) 238 51.8 1.3e-05
>>NP_958845 (OMIM: 601425) transcription elongation fact (280 aa)
initn: 1752 init1: 1669 opt: 1739 Z-score: 1619.6 bits: 307.5 E(85289): 1.8e-83
Smith-Waterman score: 1739; 95.4% identity (96.8% similar) in 284 aa overlap (1-284:1-280)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
::::::::::::::: . . :::::::::::::::::::::::::::::::::::
NP_958 MEDEVVRFAKKMDKM----VQKKNASTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 DSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_958 DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQ
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
NP_958 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQ
180 190 200 210 220 230
250 260 270 280
pF1KB8 TDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::.::::::::::::::::
NP_958 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
240 250 260 270 280
>>NP_006747 (OMIM: 601425) transcription elongation fact (301 aa)
initn: 1814 init1: 1731 opt: 1731 Z-score: 1611.8 bits: 306.2 E(85289): 4.9e-83
Smith-Waterman score: 1784; 93.4% identity (94.0% similar) in 301 aa overlap (1-284:1-301)
10 20 30 40
pF1KB8 MEDEVVRFAKKMDKM-----------------NIPMTLELLQSTRIGMSVNAIRKQSTDE
::::::::::::::: ::::::::::::::::::::::::::::
NP_006 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_006 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 NARDTYVSSFPRAPSTSDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
NP_006 NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
NP_006 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKF
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
NP_006 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
250 260 270 280 290 300
pF1KB8 C
:
NP_006 C
>>XP_011515880 (OMIM: 601425) PREDICTED: transcription e (266 aa)
initn: 1709 init1: 1709 opt: 1709 Z-score: 1592.3 bits: 302.4 E(85289): 5.9e-82
Smith-Waterman score: 1709; 98.9% identity (99.6% similar) in 266 aa overlap (19-284:1-266)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
::::::::::::::::::::::::::::::::::::::::::
XP_011 MTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
10 20 30 40
70 80 90 100 110 120
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 DSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_011 DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQ
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_011 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQ
170 180 190 200 210 220
250 260 270 280
pF1KB8 TDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::.::::::::::::::::
XP_011 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
230 240 250 260
>>XP_006716530 (OMIM: 601425) PREDICTED: transcription e (254 aa)
initn: 1639 init1: 1639 opt: 1639 Z-score: 1528.0 bits: 290.4 E(85289): 2.3e-78
Smith-Waterman score: 1639; 98.8% identity (99.6% similar) in 254 aa overlap (31-284:1-254)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
::::::::::::::::::::::::::::::
XP_006 MSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
10 20 30
70 80 90 100 110 120
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
40 50 60 70 80 90
130 140 150 160 170 180
pF1KB8 DSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_006 DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
100 110 120 130 140 150
190 200 210 220 230 240
pF1KB8 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQ
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
XP_006 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQ
160 170 180 190 200 210
250 260 270 280
pF1KB8 TDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::.::::::::::::::::
XP_006 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
220 230 240 250
>>XP_016883525 (OMIM: 604784) PREDICTED: transcription e (272 aa)
initn: 1135 init1: 918 opt: 1148 Z-score: 1074.5 bits: 206.6 E(85289): 4.1e-53
Smith-Waterman score: 1148; 66.5% identity (83.3% similar) in 269 aa overlap (17-284:10-272)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
.:.::.::::::.::::::.::::.:::: .:::::::::::::
XP_016 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
10 20 30 40 50
70 80 90 100 110
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
:. : : .. . : :: .:. : . .: . : .: ...:: .: :
XP_016 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
:.:. ::::::.:::.: :..::::: :.:..:::: :.... :::::::::::::::
XP_016 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
XP_016 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
::::::::::.:::::::::::::.:::.::::::::::::::::
XP_016 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
230 240 250 260 270
>>NP_942016 (OMIM: 604784) transcription elongation fact (272 aa)
initn: 1135 init1: 918 opt: 1148 Z-score: 1074.5 bits: 206.6 E(85289): 4.1e-53
Smith-Waterman score: 1148; 66.5% identity (83.3% similar) in 269 aa overlap (17-284:10-272)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
.:.::.::::::.::::::.::::.:::: .:::::::::::::
NP_942 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
10 20 30 40 50
70 80 90 100 110
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
:. : : .. . : :: .:. : . .: . : .: ...:: .: :
NP_942 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
:.:. ::::::.:::.: :..::::: :.:..:::: :.... :::::::::::::::
NP_942 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
NP_942 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
::::::::::.:::::::::::::.:::.::::::::::::::::
NP_942 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
230 240 250 260 270
>>XP_016883526 (OMIM: 604784) PREDICTED: transcription e (272 aa)
initn: 1135 init1: 918 opt: 1148 Z-score: 1074.5 bits: 206.6 E(85289): 4.1e-53
Smith-Waterman score: 1148; 66.5% identity (83.3% similar) in 269 aa overlap (17-284:10-272)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
.:.::.::::::.::::::.::::.:::: .:::::::::::::
XP_016 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
10 20 30 40 50
70 80 90 100 110
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
:. : : .. . : :: .:. : . .: . : .: ...:: .: :
XP_016 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
:.:. ::::::.:::.: :..::::: :.:..:::: :.... :::::::::::::::
XP_016 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
XP_016 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
::::::::::.:::::::::::::.:::.::::::::::::::::
XP_016 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
230 240 250 260 270
>>NP_003186 (OMIM: 604784) transcription elongation fact (299 aa)
initn: 1135 init1: 918 opt: 1148 Z-score: 1073.9 bits: 206.7 E(85289): 4.5e-53
Smith-Waterman score: 1163; 61.8% identity (79.1% similar) in 301 aa overlap (2-284:5-299)
10 20 30 40
pF1KB8 MEDEVVRFAKKMDKM-----------------NIPMTLELLQSTRIGMSVNAIRKQS
:.:..:.:...::: .:.::.::::::.::::::.::::
NP_003 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 TDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK
.:::: .::::::::::::::. : : .. . : :: .:. : . .:
NP_003 SDEEVIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRP
70 80 90 100 110
110 120 130 140 150
pF1KB8 DETNARDT-YVSSFPRAPSTSDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAI
. : .: ...:: .: : :.:. ::::::.:::.: :..::::: :.:..:::: :
NP_003 ELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECI
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 YQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEM
.... :::::::::::::::::::::::.::.::::: : :. .: ::.::::::::::.
NP_003 FRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEI
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 WKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGN
: .:::::::::::.::::::::::::::.:::::::::::::.:::.:::::::::::
NP_003 RKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGN
240 250 260 270 280 290
280
pF1KB8 RWKFC
:::::
NP_003 RWKFC
>>XP_011527329 (OMIM: 604784) PREDICTED: transcription e (297 aa)
initn: 1114 init1: 897 opt: 1127 Z-score: 1054.5 bits: 203.1 E(85289): 5.3e-52
Smith-Waterman score: 1127; 66.3% identity (83.1% similar) in 267 aa overlap (17-282:10-270)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
.:.::.::::::.::::::.::::.:::: .:::::::::::::
XP_011 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
10 20 30 40 50
70 80 90 100 110
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
:. : : .. . : :: .:. : . .: . : .: ...:: .: :
XP_011 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
:.:. ::::::.:::.: :..::::: :.:..:::: :.... :::::::::::::::
XP_011 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
XP_011 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
::::::::::.:::::::::::::.:::.::::::::::::::
XP_011 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKVGEQAQAAPPSSILWRW
230 240 250 260 270 280
XP_011 GVSASVGSVV
290
>>XP_011527324 (OMIM: 604784) PREDICTED: transcription e (297 aa)
initn: 1114 init1: 897 opt: 1127 Z-score: 1054.5 bits: 203.1 E(85289): 5.3e-52
Smith-Waterman score: 1127; 66.3% identity (83.1% similar) in 267 aa overlap (17-282:10-270)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
.:.::.::::::.::::::.::::.:::: .:::::::::::::
XP_011 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
10 20 30 40 50
70 80 90 100 110
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
:. : : .. . : :: .:. : . .: . : .: ...:: .: :
XP_011 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
:.:. ::::::.:::.: :..::::: :.:..:::: :.... :::::::::::::::
XP_011 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
XP_011 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
::::::::::.:::::::::::::.:::.::::::::::::::
XP_011 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKVGEQAQAAPPSSILWRW
230 240 250 260 270 280
XP_011 GVSASVGSVV
290
284 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:35:05 2016 done: Fri Nov 4 16:35:06 2016
Total Scan time: 6.270 Total Display time: 0.020
Function used was FASTA [36.3.4 Apr, 2011]