Result of FASTA (ccds) for
pFN21AB8935
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8935, 284 aa
1>>>pF1KB8935 284 - 284 aa - 284 aa
Library: human.CCDS.faa
18511270 residues in 32554 sequences
Statistics: Expectation_n fit: rho(ln(x))= 7.8766+/-0.000944; mu= 3.6884+/- 0.057
mean_var=124.1766+/-26.969, 0's: 0 Z-trim(108.4): 16 B-trim: 611 in 1/52
Lambda= 0.115094
statistics sampled from 10199 (10215) to 10199 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.679), E-opt: 0.2 (0.314), width: 16
Scan time: 2.200
The best scores are: opt bits E(32554)
CCDS47857.1 TCEA1 gene_id:6917|Hs108|chr8 ( 280) 1739 299.6 1.7e-81
CCDS47858.1 TCEA1 gene_id:6917|Hs108|chr8 ( 301) 1731 298.2 4.6e-81
CCDS13554.1 TCEA2 gene_id:6919|Hs108|chr20 ( 272) 1148 201.4 5.9e-52
CCDS13553.1 TCEA2 gene_id:6919|Hs108|chr20 ( 299) 1148 201.4 6.4e-52
CCDS44086.1 TCEA3 gene_id:6920|Hs108|chr1 ( 348) 843 150.8 1.3e-36
>>CCDS47857.1 TCEA1 gene_id:6917|Hs108|chr8 (280 aa)
initn: 1752 init1: 1669 opt: 1739 Z-score: 1576.5 bits: 299.6 E(32554): 1.7e-81
Smith-Waterman score: 1739; 95.4% identity (96.8% similar) in 284 aa overlap (1-284:1-280)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
::::::::::::::: . . :::::::::::::::::::::::::::::::::::
CCDS47 MEDEVVRFAKKMDKM----VQKKNASTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
10 20 30 40 50
70 80 90 100 110 120
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDTYVSSFPRAPSTS
60 70 80 90 100 110
130 140 150 160 170 180
pF1KB8 DSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
:::.::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 DSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISN
120 130 140 150 160 170
190 200 210 220 230 240
pF1KB8 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQ
::::::::::::::::::::::::::::::::::::::: ::::::::::::::::::::
CCDS47 LKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNLTKEAIREHQMAKTGGTQ
180 190 200 210 220 230
250 260 270 280
pF1KB8 TDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
:::::::::::::::::::::::::::.::::::::::::::::
CCDS47 TDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKFC
240 250 260 270 280
>>CCDS47858.1 TCEA1 gene_id:6917|Hs108|chr8 (301 aa)
initn: 1814 init1: 1731 opt: 1731 Z-score: 1568.8 bits: 298.2 E(32554): 4.6e-81
Smith-Waterman score: 1784; 93.4% identity (94.0% similar) in 301 aa overlap (1-284:1-301)
10 20 30 40
pF1KB8 MEDEVVRFAKKMDKM-----------------NIPMTLELLQSTRIGMSVNAIRKQSTDE
::::::::::::::: ::::::::::::::::::::::::::::
CCDS47 MEDEVVRFAKKMDKMVQKKNAAGALDLLKELKNIPMTLELLQSTRIGMSVNAIRKQSTDE
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS47 EVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDET
70 80 90 100 110 120
110 120 130 140 150 160
pF1KB8 NARDTYVSSFPRAPSTSDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
::::::::::::::::::::.:::::::::::::::::::::::::::::::::::::::
CCDS47 NARDTYVSSFPRAPSTSDSVRLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEI
130 140 150 160 170 180
170 180 190 200 210 220
pF1KB8 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNL
:::::::::::::::::::::::::::::::::::::::::::::::::::::::: :::
CCDS47 RNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMRKNL
190 200 210 220 230 240
230 240 250 260 270 280
pF1KB8 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKF
::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::::
CCDS47 TKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPMTTFVVCNECGNRWKF
250 260 270 280 290 300
pF1KB8 C
:
CCDS47 C
>>CCDS13554.1 TCEA2 gene_id:6919|Hs108|chr20 (272 aa)
initn: 1135 init1: 918 opt: 1148 Z-score: 1046.3 bits: 201.4 E(32554): 5.9e-52
Smith-Waterman score: 1148; 66.5% identity (83.3% similar) in 269 aa overlap (17-284:10-272)
10 20 30 40 50 60
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSLAKSLIKSWKKLL
.:.::.::::::.::::::.::::.:::: .:::::::::::::
CCDS13 MDLLRELKAMPITLHLLQSTRVGMSVNALRKQSSDEEVIALAKSLIKSWKKLL
10 20 30 40 50
70 80 90 100 110
pF1KB8 DGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRKDETNARDT-YVSSFPRAPST
:. : : .. . : :: .:. : . .: . : .: ...:: .: :
CCDS13 DA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRPELPRAPSTPRITTFPPVPVT
60 70 80 90 100
120 130 140 150 160 170
pF1KB8 SDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRIS
:.:. ::::::.:::.: :..::::: :.:..:::: :.... :::::::::::::::
CCDS13 CDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECIFRDVGNTDMKYKNRVRSRIS
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 NLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGT
::::::::.::.::::: : :. .: ::.::::::::::. : .:::::::::::.::::
CCDS13 NLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEIRKAMTKEAIREHQMARTGGT
170 180 190 200 210 220
240 250 260 270 280
pF1KB8 QTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
::::::::::.:::::::::::::.:::.::::::::::::::::
CCDS13 QTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGNRWKFC
230 240 250 260 270
>>CCDS13553.1 TCEA2 gene_id:6919|Hs108|chr20 (299 aa)
initn: 1135 init1: 918 opt: 1148 Z-score: 1045.6 bits: 201.4 E(32554): 6.4e-52
Smith-Waterman score: 1163; 61.8% identity (79.1% similar) in 301 aa overlap (2-284:5-299)
10 20 30 40
pF1KB8 MEDEVVRFAKKMDKM-----------------NIPMTLELLQSTRIGMSVNAIRKQS
:.:..:.:...::: .:.::.::::::.::::::.::::
CCDS13 MMGKEEEIARIARRLDKMVTKKSAEGAMDLLRELKAMPITLHLLQSTRVGMSVNALRKQS
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 TDEEVTSLAKSLIKSWKKLLDGPSTEKDLDEKKKEPAITSQNSPEAREESTSSGNVSNRK
.:::: .::::::::::::::. : : .. . : :: .:. : . .:
CCDS13 SDEEVIALAKSLIKSWKKLLDA-SDAKARERGRGMPLPTS-----SRDASEAPDPSRKRP
70 80 90 100 110
110 120 130 140 150
pF1KB8 DETNARDT-YVSSFPRAPSTSDSVQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAI
. : .: ...:: .: : :.:. ::::::.:::.: :..::::: :.:..:::: :
CCDS13 ELPRAPSTPRITTFPPVPVTCDAVRNKCREMLTAALQTDHDHVAIGADCERLSAQIEECI
120 130 140 150 160 170
160 170 180 190 200 210
pF1KB8 YQEIRNTDMKYKNRVRSRISNLKDAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEM
.... :::::::::::::::::::::::.::.::::: : :. .: ::.::::::::::.
CCDS13 FRDVGNTDMKYKNRVRSRISNLKDAKNPDLRRNVLCGAITPQQIAVMTSEEMASDELKEI
180 190 200 210 220 230
220 230 240 250 260 270
pF1KB8 WKNLTKEAIREHQMAKTGGTQTDLFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGN
: .:::::::::::.::::::::::::::.:::::::::::::.:::.:::::::::::
CCDS13 RKAMTKEAIREHQMARTGGTQTDLFTCGKCRKKNCTYTQVQTRSSDEPMTTFVVCNECGN
240 250 260 270 280 290
280
pF1KB8 RWKFC
:::::
CCDS13 RWKFC
>>CCDS44086.1 TCEA3 gene_id:6920|Hs108|chr1 (348 aa)
initn: 1045 init1: 809 opt: 843 Z-score: 770.9 bits: 150.8 E(32554): 1.3e-36
Smith-Waterman score: 967; 52.9% identity (74.4% similar) in 312 aa overlap (19-284:38-348)
10 20 30 40
pF1KB8 MEDEVVRFAKKMDKMNIPMTLELLQSTRIGMSVNAIRKQSTDEEVTSL
:...:::.::::..::..::. .:.::.::
CCDS44 LRIAKKLEKMVARKNTEGALDLLKKLHSCQMSIQLLQTTRIGVAVNGVRKHCSDKEVVSL
10 20 30 40 50 60
50 60 70 80
pF1KB8 AKSLIKSWKKLLDGPST---EKDLDE---KKKEPAITSQN-SPEA--------REE----
:: :::.::.:::.:. :: .. :::: .. .. .::: ::.
CCDS44 AKVLIKNWKRLLDSPGPPKGEKGEEREKAKKKEKGLECSDWKPEAGLSPPRKKREDPKTR
70 80 90 100 110 120
90 100 110 120
pF1KB8 -----STSSGNVSNRK---DETNARDTYVSSFPRAPS-------------------TSDS
: ::.. : .. ...:. . . : :..:: :.::
CCDS44 RDSVDSKSSASSSPKRPSVERSNSSKSKAES-PKTPSSPLTPTFASSMCLLAPCYLTGDS
130 140 150 160 170 180
130 140 150 160 170 180
pF1KB8 VQLKCREMLAAALRTGDDYIAIGADEEELGSQIEEAIYQEIRNTDMKYKNRVRSRISNLK
:. :: :::.:::.. ::: :.. ....:.::. ::::...:::::.:::::::::::
CCDS44 VRDKCVEMLSAALKADDDYKDYGVNCDKMASEIEDHIYQELKSTDMKYRNRVRSRISNLK
190 200 210 220 230 240
190 200 210 220 230 240
pF1KB8 DAKNPNLRKNVLCGNIPPDLFARMTAEEMASDELKEMWKNLTKEAIREHQMAKTGGTQTD
: .::.::.::: : : :.:.:::::::::::.:. . .:.:::::::::::::: ::
CCDS44 DPRNPGLRRNVLSGAISAGLIAKMTAEEMASDELRELRNAMTQEAIREHQMAKTGGTTTD
250 260 270 280 290 300
250 260 270 280
pF1KB8 LFTCGKCKKKNCTYTQVQTRSADEPVTTFVVCNECGNRWKFC
:: :.:::::::::.::::::::::.::::.:::::::::::
CCDS44 LFQCSKCKKKNCTYNQVQTRSADEPMTTFVLCNECGNRWKFC
310 320 330 340
284 residues in 1 query sequences
18511270 residues in 32554 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:35:04 2016 done: Fri Nov 4 16:35:04 2016
Total Scan time: 2.200 Total Display time: -0.020
Function used was FASTA [36.3.4 Apr, 2011]