Result of FASTA (omim) for
pFN21AB8919
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8919, 264 aa
1>>>pF1KB8919 264 - 264 aa - 264 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 8.9281+/-0.000326; mu= 2.7929+/- 0.021
mean_var=309.7680+/-61.929, 0's: 0 Z-trim(125.7): 184 B-trim: 0 in 0/62
Lambda= 0.072871
statistics sampled from 49834 (50067) to 49834 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.853), E-opt: 0.2 (0.587), width: 16
Scan time: 8.020
The best scores are: opt bits E(85289)
NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 1873 209.1 6.9e-54
NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [ ( 264) 1873 209.1 6.9e-54
NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [ ( 251) 925 109.4 6.7e-24
NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [ ( 255) 909 107.7 2.2e-23
NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [ ( 320) 705 86.4 7.2e-17
NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [ ( 270) 529 67.8 2.4e-11
NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [ ( 269) 497 64.4 2.5e-10
NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [ ( 224) 474 61.9 1.2e-09
XP_005257340 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 474 61.9 1.2e-09
XP_005257341 (OMIM: 142961) PREDICTED: homeobox pr ( 224) 474 61.9 1.2e-09
XP_011523029 (OMIM: 142961) PREDICTED: homeobox pr ( 288) 474 62.0 1.4e-09
NP_061826 (OMIM: 142973) homeobox protein Hox-C5 [ ( 222) 458 60.2 3.7e-09
NP_076919 (OMIM: 142951) homeobox protein Hox-A6 [ ( 233) 422 56.5 5.3e-08
NP_004494 (OMIM: 142972) homeobox protein Hox-C6 i ( 235) 407 54.9 1.6e-07
NP_008827 (OMIM: 142950) homeobox protein Hox-A7 [ ( 230) 400 54.1 2.6e-07
NP_710160 (OMIM: 142972) homeobox protein Hox-C6 i ( 153) 394 53.3 3.1e-07
XP_005246571 (OMIM: 142981) PREDICTED: homeobox pr ( 146) 382 52.0 7.2e-07
NP_002136 (OMIM: 142967) homeobox protein Hox-B2 [ ( 356) 388 53.1 8.3e-07
NP_001795 (OMIM: 600746) homeobox protein CDX-1 [H ( 265) 384 52.5 9.1e-07
NP_004493 (OMIM: 142962) homeobox protein Hox-B7 [ ( 217) 376 51.6 1.4e-06
NP_000200 (OMIM: 125853,260370,600733,606176,60639 ( 283) 377 51.8 1.6e-06
XP_006715778 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 364 50.7 5.5e-06
XP_011513645 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 364 50.7 5.5e-06
XP_005249788 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 364 50.7 5.5e-06
XP_005249789 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 364 50.7 5.5e-06
XP_005249787 (OMIM: 142954) PREDICTED: homeobox pr ( 443) 364 50.7 5.5e-06
NP_109377 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 364 50.7 5.5e-06
NP_705895 (OMIM: 142954) homeobox protein Hox-A3 i ( 443) 364 50.7 5.5e-06
NP_005513 (OMIM: 142955,601536) homeobox protein H ( 335) 338 47.8 3e-05
XP_011523023 (OMIM: 142966) PREDICTED: homeobox pr ( 430) 340 48.2 3.1e-05
NP_001256 (OMIM: 600297) homeobox protein CDX-2 [H ( 313) 334 47.4 3.9e-05
NP_001317252 (OMIM: 142966) homeobox protein Hox-B ( 299) 332 47.1 4.4e-05
XP_011523028 (OMIM: 142966) PREDICTED: homeobox pr ( 358) 332 47.2 4.9e-05
NP_001317251 (OMIM: 142966) homeobox protein Hox-B ( 358) 332 47.2 4.9e-05
NP_002135 (OMIM: 142968,614744) homeobox protein H ( 301) 330 46.9 5.1e-05
XP_005257334 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 47.4 5.2e-05
XP_011523021 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 47.4 5.2e-05
XP_006721917 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 47.4 5.2e-05
XP_011523022 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 47.4 5.2e-05
XP_011523012 (OMIM: 142966) PREDICTED: homeobox pr ( 431) 333 47.4 5.2e-05
NP_002137 (OMIM: 142966) homeobox protein Hox-B3 i ( 431) 333 47.4 5.2e-05
NP_001092304 (OMIM: 603354) homeobox protein GBX-1 ( 363) 331 47.1 5.3e-05
XP_011523010 (OMIM: 142966) PREDICTED: homeobox pr ( 488) 332 47.4 6e-05
XP_011523009 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 47.6 6.2e-05
XP_016880052 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 47.6 6.2e-05
XP_016880046 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 47.6 6.2e-05
XP_016880051 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 47.6 6.2e-05
XP_016880047 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 47.6 6.2e-05
XP_016880049 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 47.6 6.2e-05
XP_016880048 (OMIM: 142966) PREDICTED: homeobox pr ( 578) 333 47.6 6.2e-05
>>NP_705897 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 1873 init1: 1873 opt: 1873 Z-score: 1088.5 bits: 209.1 E(85289): 6.9e-54
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)
10 20 30 40 50 60
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_705 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
190 200 210 220 230 240
250 260
pF1KB8 GTSEDHSQSATPPEQQRAEDITRL
::::::::::::::::::::::::
NP_705 GTSEDHSQSATPPEQQRAEDITRL
250 260
>>NP_055435 (OMIM: 142974) homeobox protein Hox-C4 [Homo (264 aa)
initn: 1873 init1: 1873 opt: 1873 Z-score: 1088.5 bits: 209.1 E(85289): 6.9e-54
Smith-Waterman score: 1873; 100.0% identity (100.0% similar) in 264 aa overlap (1-264:1-264)
10 20 30 40 50 60
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRP
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 SYPERQYSCTSLQGPGNSRGHGPAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 APDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRY
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_055 LTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATP
190 200 210 220 230 240
250 260
pF1KB8 GTSEDHSQSATPPEQQRAEDITRL
::::::::::::::::::::::::
NP_055 GTSEDHSQSATPPEQQRAEDITRL
250 260
>>NP_076920 (OMIM: 142965) homeobox protein Hox-B4 [Homo (251 aa)
initn: 1092 init1: 704 opt: 925 Z-score: 550.1 bits: 109.4 E(85289): 6.7e-24
Smith-Waterman score: 953; 59.9% identity (71.8% similar) in 252 aa overlap (1-231:1-237)
10 20 30 40
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIP-EHSPEYY--GRTRESGFQHHH--------
: :::.:..:::.::::::::::::..:.: .::: :: :. :::.:: .
NP_076 MAMSSFLINSNYVDPKFPPCEEYSQSDYLPSDHSPGYYAGGQRRESSFQPEAGFGRRAAC
10 20 30 40 50 60
50 60 70 80 90 100
pF1KB8 --------QELYPPPPPRPSYPERQYSCTSLQGPGNS-RGHGPAQAGHHHPEKSQSLCEP
.. ::::: : : :: : :. .: :: :: .: ::
NP_076 TVQRYAACRDPGPPPPPPPPPPPPP-------PPGLSPRAPAPPPAGALLPEPGQR-CE-
70 80 90 100 110
110 120 130 140 150
pF1KB8 APLSGASASPSPAPPACSQ-PAPDHPSSAASKQPIVYPWMKKIHVSTVNPNYNGGEPKRS
..: :: :: :.: : :: .: :.:.:::::.:.::::::::: :::::::
NP_076 ------AVSSSPPPPPCAQNPLHPSPSHSACKEPVVYPWMRKVHVSTVNPNYAGGEPKRS
120 130 140 150 160
160 170 180 190 200 210
pF1KB8 RTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPN
:::::::::::::::::::::::::::.::::.:::::::::::::::::::::::.:::
NP_076 RTAYTRQQVLELEKEFHYNRYLTRRRRVEIAHALCLSERQIKIWFQNRRMKWKKDHKLPN
170 180 190 200 210 220
220 230 240 250 260
pF1KB8 TKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
::.::. ::.:
NP_076 TKIRSGGAAGSAGGPPGRPNGGPRAL
230 240 250
>>NP_055436 (OMIM: 142981) homeobox protein Hox-D4 [Homo (255 aa)
initn: 828 init1: 597 opt: 909 Z-score: 540.9 bits: 107.7 E(85289): 2.2e-23
Smith-Waterman score: 909; 55.1% identity (73.5% similar) in 272 aa overlap (1-264:1-255)
10 20 30 40 50
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
:.::::...:.:.:::::::::: :..:. :.. .::: .: : .. :: ::
NP_055 MVMSSYMVNSKYVDPKFPPCEEYLQGGYLGEQGADYYG----GGAQG--ADFQPPGLYPR
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 PSYPERQYSCTSLQGPGNS---RGHG--PAQAGHHHPEKSQSLCEPAPLSGASASPSPAP
:.. :. .. : :::.. :::: :. : :. .. : ::: . : : :.
NP_055 PDFGEQPFG-GSGPGPGSALPARGHGQEPGGPGGHYAAPGEP-C-PAPPAPPPA-PLPGA
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 PACSQPAPDHP-SSAASKQP-IVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELE
: :: : .: :..: ::: .:::::::.::..:::::.::::::::::::::::::::
NP_055 RAYSQSDPKQPPSGTALKQPAVVYPWMKKVHVNSVNPNYTGGEPKRSRTAYTRQQVLELE
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 KEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAP
::::.::::::::::::::.:::::::::::::::::::::::.::::: ::.
NP_055 KEFHFNRYLTRRRRIEIAHTLCLSERQIKIWFQNRRMKWKKDHKLPNTKGRSS-------
180 190 200 210 220
240 250 260
pF1KB8 STLSAATPGTSEDHSQSATPPEQQRAEDITRL
:. :... ..: :: : ... :.: :
NP_055 SSSSSSSCSSSVAPSQHLQPMAKDHHTDLTTL
230 240 250
>>NP_002132 (OMIM: 142953) homeobox protein Hox-A4 [Homo (320 aa)
initn: 820 init1: 659 opt: 705 Z-score: 423.9 bits: 86.4 E(85289): 7.2e-17
Smith-Waterman score: 705; 48.6% identity (62.5% similar) in 253 aa overlap (10-252:71-306)
10 20 30
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGR
..: :. : . : :.
NP_002 GYQQPPAPPTQHLPLQQPQLPHAGGGREPTASYYAPRTAREPAYPAAALYPAHGAA--DT
50 60 70 80 90
40 50 60 70 80 90
pF1KB8 TRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP--GNSRGH------GPAQAGHHHP
. :.. . : ::.: : : .:: : .: : . :
NP_002 AYPYGYRGGAS---PGRPPQPEQPPAQA-----KGPAHGLHASHVLQPQLPPPLQPRAVP
100 110 120 130 140 150
100 110 120 130 140
pF1KB8 EKSQSLCEPAPLS-GASASPSPAPPACSQPAPDH-PSSAASKQPIVYPWMKKIHVSTVNP
. :: :: . :. :. : ::: :. : . .:.:.:::::::::::.:::
NP_002 PAAPRRCEAAPATPGVPAGGS--APACPLLLADKSPLGLKGKEPVVYPWMKKIHVSAVNP
160 170 180 190 200
150 160 170 180 190 200
pF1KB8 NYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRM
.::::::::::::::::::::::::::.::::::::::::::.:::::::.:::::::::
NP_002 SYNGGEPKRSRTAYTRQQVLELEKEFHFNRYLTRRRRIEIAHTLCLSERQVKIWFQNRRM
210 220 230 240 250 260
210 220 230 240 250 260
pF1KB8 KWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
::::::.:::::.::. :.: ::. :: .. .: :
NP_002 KWKKDHKLPNTKMRSSNSASA-----SAGPPGKAQTQSPHLHPHPHPSTSTPVPSSI
270 280 290 300 310 320
>>NP_061975 (OMIM: 142952) homeobox protein Hox-A5 [Homo (270 aa)
initn: 586 init1: 382 opt: 529 Z-score: 324.7 bits: 67.8 E(85289): 2.4e-11
Smith-Waterman score: 529; 49.2% identity (64.9% similar) in 185 aa overlap (54-231:96-267)
30 40 50 60 70 80
pF1KB8 SQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQ-GPGNSRGHG
: : : : :... .::.. ::
NP_061 SGERARSYAASASAAPAEPRYSQPATSTHSPQPDPLP--------CSAVAPSPGSDSHHG
70 80 90 100 110
90 100 110 120 130
pF1KB8 -----PAQAGHHHPEKSQSLCEPAPLSGASASPSPAPPACSQP-APDHPSSAASKQPIVY
..: : . .. ::.. :: . : : ..:: : :: .:
NP_061 GKNSLSNSSGASADAGSTHISSREGVGTASGAEEDAPASSEQASAQSEPSPAPPAQPQIY
120 130 140 150 160 170
140 150 160 170 180 190
pF1KB8 PWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTRRRRIEIAHSLCLS
:::.:.:.: . : .: : ::.:::::: :.::::::::.::::::::::::::.::::
NP_061 PWMRKLHIS--HDNIGGPEGKRARTAYTRYQTLELEKEFHFNRYLTRRRRIEIAHALCLS
180 190 200 210 220 230
200 210 220 230 240 250
pF1KB8 ERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTSEDHSQSATPPEQQ
::::::::::::::::::..: : : ::.:
NP_061 ERQIKIWFQNRRMKWKKDNKL---KSMSMAAAGGAFRP
240 250 260 270
260
pF1KB8 RAEDITRL
>>NP_002138 (OMIM: 142960) homeobox protein Hox-B5 [Homo (269 aa)
initn: 452 init1: 384 opt: 497 Z-score: 306.6 bits: 64.4 E(85289): 2.5e-10
Smith-Waterman score: 520; 46.2% identity (67.2% similar) in 195 aa overlap (53-228:76-266)
30 40 50 60 70
pF1KB8 YSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPPPPRPSYPERQYSCTSLQGP-------
.: : .: . . :: ::..:
NP_002 GYNYNGMDLSVNRSSASSSHFGAVGESSRAFPAPAQEPRFRQAASSC-SLSSPESLPCTN
50 60 70 80 90 100
80 90 100 110 120
pF1KB8 GNSRGHGP-AQAGHHHPEKSQSLCEPAPLSGASASPSPAPPAC---------SQPAPDHP
:.:.: : :.. . ...: . . .. :::: : : .:: :
NP_002 GDSHGAKPSASSPSDQATSASSSANFTEIDEASASSEPEEAASQLSSPSLARAQPEPMAT
110 120 130 140 150 160
130 140 150 160 170 180
pF1KB8 SSAA--SKQPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQVLELEKEFHYNRYLTR
:.:: .. : ..:::.:.:.: ...: . ::.:::::: :.::::::::.::::::
NP_002 STAAPEGQTPQIFPWMRKLHIS---HDMTGPDGKRARTAYTRYQTLELEKEFHFNRYLTR
170 180 190 200 210 220
190 200 210 220 230 240
pF1KB8 RRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPPAGAAPSTLSAATPGTS
::::::::.::::::::::::::::::::::..: . .. .: :
NP_002 RRRIEIAHALCLSERQIKIWFQNRRMKWKKDNKLKSMSLATAGSAFQP
230 240 250 260
250 260
pF1KB8 EDHSQSATPPEQQRAEDITRL
>>NP_061825 (OMIM: 142961) homeobox protein Hox-B6 [Homo (224 aa)
initn: 388 init1: 356 opt: 474 Z-score: 294.4 bits: 61.9 E(85289): 1.2e-09
Smith-Waterman score: 474; 41.1% identity (61.5% similar) in 231 aa overlap (8-225:1-215)
10 20 30 40 50
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
:.: ... :: .:.:.. . : : ::. .. :: : :
NP_061 MSSYFVNSTFPVTLASGQESFLGQL-PLY-----SSGYADPLRH-YPAPYGPG
10 20 30 40
60 70 80 90 100 110
pF1KB8 PSYPERQYSCTSLQGP-GNSRG------HGPAQAGHHHPEKSQSLCEPAPLSGASASPS-
:. .. .. .: : :.. : .::: : ... : : : ::::. .:
NP_061 PGQ-DKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKE---SACA---LSGADEQPPF
50 60 70 80 90
120 130 140 150 160
pF1KB8 -PAP--PACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQ
: : :.: . .: . :::::.... . : . : .:.: .::: :
NP_061 HPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQ
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 VLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPP
.:::::::::::::::::::::::.:::.:::::::::::::::::. .: ... ::
NP_061 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEE
160 170 180 190 200 210
230 240 250 260
pF1KB8 AGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
NP_061 EEEKQAE
220
>>XP_005257340 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 388 init1: 356 opt: 474 Z-score: 294.4 bits: 61.9 E(85289): 1.2e-09
Smith-Waterman score: 474; 41.1% identity (61.5% similar) in 231 aa overlap (8-225:1-215)
10 20 30 40 50
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
:.: ... :: .:.:.. . : : ::. .. :: : :
XP_005 MSSYFVNSTFPVTLASGQESFLGQL-PLY-----SSGYADPLRH-YPAPYGPG
10 20 30 40
60 70 80 90 100 110
pF1KB8 PSYPERQYSCTSLQGP-GNSRG------HGPAQAGHHHPEKSQSLCEPAPLSGASASPS-
:. .. .. .: : :.. : .::: : ... : : : ::::. .:
XP_005 PGQ-DKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKE---SACA---LSGADEQPPF
50 60 70 80 90
120 130 140 150 160
pF1KB8 -PAP--PACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQ
: : :.: . .: . :::::.... . : . : .:.: .::: :
XP_005 HPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQ
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 VLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPP
.:::::::::::::::::::::::.:::.:::::::::::::::::. .: ... ::
XP_005 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEE
160 170 180 190 200 210
230 240 250 260
pF1KB8 AGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
XP_005 EEEKQAE
220
>>XP_005257341 (OMIM: 142961) PREDICTED: homeobox protei (224 aa)
initn: 388 init1: 356 opt: 474 Z-score: 294.4 bits: 61.9 E(85289): 1.2e-09
Smith-Waterman score: 474; 41.1% identity (61.5% similar) in 231 aa overlap (8-225:1-215)
10 20 30 40 50
pF1KB8 MIMSSYLMDSNYIDPKFPPCEEYSQNSYIPEHSPEYYGRTRESGFQHHHQELYPPP-PPR
:.: ... :: .:.:.. . : : ::. .. :: : :
XP_005 MSSYFVNSTFPVTLASGQESFLGQL-PLY-----SSGYADPLRH-YPAPYGPG
10 20 30 40
60 70 80 90 100 110
pF1KB8 PSYPERQYSCTSLQGP-GNSRG------HGPAQAGHHHPEKSQSLCEPAPLSGASASPS-
:. .. .. .: : :.. : .::: : ... : : : ::::. .:
XP_005 PGQ-DKGFATSSYYPPAGGGYGRAAPCDYGPAPAFYREKE---SACA---LSGADEQPPF
50 60 70 80 90
120 130 140 150 160
pF1KB8 -PAP--PACSQPAPDHPSSAASK-QPIVYPWMKKIHVSTVNPNYNGGEPKRSRTAYTRQQ
: : :.: . .: . :::::.... . : . : .:.: .::: :
XP_005 HPEPRKSDCAQDKSVFGETEEQKCSTPVYPWMQRMN--SCNSSSFGPSGRRGRQTYTRYQ
100 110 120 130 140 150
170 180 190 200 210 220
pF1KB8 VLELEKEFHYNRYLTRRRRIEIAHSLCLSERQIKIWFQNRRMKWKKDHRLPNTKVRSAPP
.:::::::::::::::::::::::.:::.:::::::::::::::::. .: ... ::
XP_005 TLELEKEFHYNRYLTRRRRIEIAHALCLTERQIKIWFQNRRMKWKKESKLLSASQLSAEE
160 170 180 190 200 210
230 240 250 260
pF1KB8 AGAAPSTLSAATPGTSEDHSQSATPPEQQRAEDITRL
XP_005 EEEKQAE
220
264 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 16:30:00 2016 done: Fri Nov 4 16:30:01 2016
Total Scan time: 8.020 Total Display time: 0.000
Function used was FASTA [36.3.4 Apr, 2011]