FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KB8855, 87 aa
  1>>>pF1KB8855 87 - 87 aa - 87 aa
Library: human.CCDS.faa
  18511270 residues in 32554 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 5.5440+/-0.000585; mu= 7.7819+/- 0.036
 mean_var=64.7565+/-12.706, 0's: 0 Z-trim(111.7): 5  B-trim: 14 in 1/51
 Lambda= 0.159380
 statistics sampled from 12560 (12564) to 12560 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.765), E-opt: 0.2 (0.386), width:  16
 Scan time:  1.400

The best scores are:                                      opt bits E(32554)
CCDS59033.1 PKIB gene_id:5570|Hs108|chr6           (  85)  501 122.8 2.6e-29
CCDS5126.1 PKIB gene_id:5570|Hs108|chr6            (  78)  483 118.7 4.2e-28


>>CCDS59033.1 PKIB gene_id:5570|Hs108|chr6                (85 aa)
 initn: 501 init1: 501 opt: 501  Z-score: 639.7  bits: 122.8 E(32554): 2.6e-29
Smith-Waterman score: 501; 100.0% identity (100.0% similar) in 81 aa overlap (7-87:5-85)

               10        20        30        40        50        60
pF1KB8 MHILFVDVAMRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEA
             ::::::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS59   MSHQDVAMRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEA
                 10        20        30        40        50        

               70        80       
pF1KB8 LSVKEDAKEKDEKTTQDQLEKPQNEEK
       :::::::::::::::::::::::::::
CCDS59 LSVKEDAKEKDEKTTQDQLEKPQNEEK
       60        70        80     

>>CCDS5126.1 PKIB gene_id:5570|Hs108|chr6                 (78 aa)
 initn: 483 init1: 483 opt: 483  Z-score: 618.0  bits: 118.7 E(32554): 4.2e-28
Smith-Waterman score: 483; 100.0% identity (100.0% similar) in 78 aa overlap (10-87:1-78)

               10        20        30        40        50        60
pF1KB8 MHILFVDVAMRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEA
                :::::::::::::::::::::::::::::::::::::::::::::::::::
CCDS51          MRTDSSKMTDVESGVANFASSARAGRRNALPDIQSSAATDGTSDLPLKLEA
                        10        20        30        40        50 

               70        80       
pF1KB8 LSVKEDAKEKDEKTTQDQLEKPQNEEK
       :::::::::::::::::::::::::::
CCDS51 LSVKEDAKEKDEKTTQDQLEKPQNEEK
              60        70        




87 residues in 1 query   sequences
18511270 residues in 32554 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Fri Nov  4 16:07:52 2016 done: Fri Nov  4 16:07:52 2016
 Total Scan time:  1.400 Total Display time: -0.020

Function used was FASTA [36.3.4 Apr, 2011]