(Circular) (Six-base) MAPSORT of: pFN21AB8830.seq Check: 2062 from: 1 to: 6025 pFN21AB8830 6025 bp With 182 enzymes: SgfI * February 27, 2009 14:43 .. AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3835 278 Size: 53 83 186 936 2299 2468 Fragments arranged by size: 2468 2299 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 3368 1937 Size: 1431 4594 Acc65I G'GTAC_C Cuts at: 2921 3346 2921 Size: 425 5600 AclI AA'CG_TT Cuts at: 1563 4152 4525 1563 Size: 2589 373 3063 Fragments arranged by size: 3063 2589 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 2328 2825 3281 4088 5472 5740 1632 Size: 696 497 456 807 1384 268 1917 Fragments arranged by size: 1917 1384 807 696 497 456 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5828 AflIII A'CryG_T Cuts at: 1203 4924 5901 1203 Size: 3721 977 1327 Fragments arranged by size: 3721 1327 977 AgeI A'CCGG_T Cuts at: 4856 4856 Size: 6025 AhdI GACnn_n'nnGTC Cuts at: 4754 4754 Size: 6025 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 6025 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 6025 AlwNI CAG_nnn'CTG Cuts at: 2150 2287 3768 5340 2150 Size: 137 1481 1572 2835 Fragments arranged by size: 2835 1572 1481 137 ApaLI G'TGCA_C Cuts at: 4082 5238 4082 Size: 1156 4869 ApoI r'AATT_y Cuts at: 1493 2367 2467 2703 3334 3560 3712 5821 1493 Size: 874 100 236 631 226 152 2109 1697 Fragments arranged by size: 2109 1697 874 631 236 226 152 100 AseI AT'TA_AT Cuts at: 160 1032 4579 160 Size: 872 3547 1606 Fragments arranged by size: 3547 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 6025 AvaI C'yCGr_G Cuts at: 1870 1943 3350 1870 Size: 73 1407 4545 Fragments arranged by size: 4545 1407 73 BamHI G'GATC_C Cuts at: 3355 3722 3355 Size: 367 5658 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2921 3346 4801 618 Size: 325 217 627 1134 425 1455 1842 Fragments arranged by size: 1842 1455 1134 627 425 325 217 BanII G_rGCy'C Cuts at: 1391 3084 3344 1391 Size: 1693 260 4072 Fragments arranged by size: 4072 1693 260 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2958 3049 928 Size: 971 1059 91 3904 Fragments arranged by size: 3904 1059 971 91 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 4216 4250 1903 Size: 34 2279 34 3678 Fragments arranged by size: 3678 2279 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3917 5127 3917 Size: 1210 4815 BclI T'GATC_A Cuts at: 1548 1548 Size: 6025 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 4636 136 Size: 107 122 71 631 605 2964 1525 Fragments arranged by size: 2964 1525 631 605 122 107 71 BglII A'GATC_T Cuts at: 6020 6020 Size: 6025 BlpI GC'TnA_GC Cuts at: 3442 3442 Size: 6025 Bme1580I G_kGCm'C Cuts at: 1790 4086 5242 1790 Size: 2296 1156 2573 Fragments arranged by size: 2573 2296 1156 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 6025 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2875 3087 3756 Size: 416 53 83 399 24 1458 212 669 Cuts at: 3756 4714 442 Size: 958 1753 Fragments arranged by size: 1753 1458 958 669 416 399 212 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 6025 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 4685 1239 Size: 3446 2579 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 4150 5015 5313 4150 Size: 865 298 4862 Fragments arranged by size: 4862 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4688 882 Size: 617 3189 2219 Fragments arranged by size: 3189 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3816 493 Size: 711 2612 2702 Fragments arranged by size: 2702 2612 711 BsaBI GATnn'nnATC Cuts at: 6019 6019 Size: 6025 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3832 4214 4849 275 Size: 53 83 186 936 2299 382 635 1451 Fragments arranged by size: 2299 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 4458 4856 5130 5277 5688 4458 Size: 398 274 147 411 4795 Fragments arranged by size: 4795 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2056 2086 2820 2850 1178 Size: 30 165 30 653 30 734 30 4353 Fragments arranged by size: 4353 734 653 165 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 1186 Size: 6025 BseYI C'CCAG_C Cuts at: 5228 5724 5228 Size: 496 5529 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 1163 Size: 573 5452 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 3475 4236 5264 1540 Size: 275 186 1474 761 1028 2301 Fragments arranged by size: 2301 1474 1028 761 275 186 BsiHKAI G_wGCw'C Cuts at: 4086 4171 5242 4086 Size: 85 1071 4869 Fragments arranged by size: 4869 1071 85 BsmI GAATG_Cn' Cuts at: 3536 3629 3536 Size: 93 5932 Bsp1286I G_dGCh'C Cuts at: 1391 1790 3084 3344 4086 4171 5242 1391 Size: 399 1294 260 742 85 1071 2174 Fragments arranged by size: 2174 1294 1071 742 399 260 85 BspEI T'CCGG_A Cuts at: 5688 5688 Size: 6025 BspHI T'CATG_A Cuts at: 3914 5644 3914 Size: 1730 4295 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 3380 844 Size: 2536 3489 BsrBI CCG'CTC Cuts at: 1394 1823 3912 1394 Size: 429 2089 3507 Fragments arranged by size: 3507 2089 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3326 4520 4694 65 Size: 1183 2078 1194 174 1396 Fragments arranged by size: 2078 1396 1194 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4669 4856 1700 Size: 110 2859 187 2869 Fragments arranged by size: 2869 2859 187 110 BsrGI T'GTAC_A Cuts at: 96 3203 96 Size: 3107 2918 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 6025 BssSI C'ACGA_G Cuts at: 4085 5097 4085 Size: 1012 5013 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 6025 BstBI TT'CG_AA Cuts at: 4829 4829 Size: 6025 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 6025 BstXI CCAn_nnnn'nTGG Cuts at: 2230 2865 2230 Size: 635 5390 BstYI r'GATC_y Cuts at: 1972 3355 3722 4107 4124 5576 5662 5674 6020 Size: 1383 367 385 17 1452 86 12 346 Cuts at: 6020 1972 Size: 1977 Fragments arranged by size: 1977 1452 1383 385 367 346 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2004 2298 513 Size: 552 939 294 4240 Fragments arranged by size: 4240 939 552 294 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 5286 Fragments arranged by size: 5286 683 56 BtsI GCAGTG_nn' Cuts at: 2312 2454 3541 4335 4355 2312 Size: 142 1087 794 20 3982 Fragments arranged by size: 3982 1087 794 142 20 ClaI AT'CG_AT Cuts at: 1554 2257 3222 1554 Size: 703 965 4357 Fragments arranged by size: 4357 965 703 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 529 Size: 35 5990 DraI TTT'AAA Cuts at: 3329 3329 Size: 6025 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 2985 3053 5032 809 Size: 507 1669 68 1979 1802 Fragments arranged by size: 1979 1802 1669 507 68 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 3472 4361 5990 Size: 54 1425 50 275 18 1642 889 1629 Cuts at: 5990 8 Size: 43 Fragments arranged by size: 1642 1629 1425 889 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 3472 1537 Size: 275 1660 4090 Fragments arranged by size: 4090 1660 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2347 3000 3955 1353 Size: 994 653 955 3423 Fragments arranged by size: 3423 994 955 653 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 4612 4986 5132 387 Size: 1064 138 3023 374 146 1280 Fragments arranged by size: 3023 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2328 2825 3281 4088 4685 5472 5740 Size: 393 696 497 456 807 597 787 268 Cuts at: 5740 1239 Size: 1524 Fragments arranged by size: 1524 807 787 696 597 497 456 393 268 EcoO109I rG'GnC_Cy Cuts at: 2627 3100 2627 Size: 473 5552 EcoRI G'AATT_C Cuts at: 3334 3712 3334 Size: 378 5647 FspI TGC'GCA Cuts at: 4531 4531 Size: 6025 HaeII r_GCGC'y Cuts at: 1678 3111 5172 1678 Size: 1433 2061 2531 Fragments arranged by size: 2531 2061 1433 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 2509 2541 4666 4698 4740 Size: 32 135 32 937 32 2125 32 42 Cuts at: 4740 4772 1373 Size: 32 2626 Fragments arranged by size: 2626 2125 937 135 42 32 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 3369 3615 669 Size: 988 281 1431 246 3079 Fragments arranged by size: 3079 1431 988 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 6025 HpaI GTT'AAC Cuts at: 3615 3615 Size: 6025 KpnI G_GTAC'C Cuts at: 2925 3350 2925 Size: 425 5600 MfeI C'AATT_G Cuts at: 3624 3624 Size: 6025 MluI A'CGCG_T Cuts at: 5901 5901 Size: 6025 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 2042 2211 2757 5139 5323 1305 Size: 737 169 546 2382 184 2007 Fragments arranged by size: 2382 2007 737 546 184 169 MscI TGG'CCA Cuts at: 10 64 1489 1832 10 Size: 54 1425 343 4203 Fragments arranged by size: 4203 1425 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2247 2376 2577 3983 4342 4501 518 Size: 648 1081 129 201 1406 359 159 2042 Fragments arranged by size: 2042 1406 1081 648 359 201 159 129 MspA1I CmG'CkG Cuts at: 1606 2214 3441 4118 5266 5511 1606 Size: 608 1227 677 1148 245 2120 Fragments arranged by size: 2120 1227 1148 677 608 245 NcoI C'CATG_G Cuts at: 513 1065 2004 513 Size: 552 939 4534 Fragments arranged by size: 4534 939 552 NdeI CA'TA_TG Cuts at: 387 387 Size: 6025 NheI G'CTAG_C Cuts at: 1052 1052 Size: 6025 NotI GC'GGCC_GC Cuts at: 3472 3472 Size: 6025 NspI r_CATG'y Cuts at: 1132 1229 3383 4928 1132 Size: 97 2154 1545 2229 Fragments arranged by size: 2229 2154 1545 97 PasI CC'CwG_GG Cuts at: 1348 1348 Size: 6025 PciI A'CATG_T Cuts at: 4924 4924 Size: 6025 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 6025 PmeI GTTT'AAAC Cuts at: 3329 3329 Size: 6025 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 4094 4126 5607 5639 4094 Size: 32 1481 32 4480 Fragments arranged by size: 4480 1481 32 32 PpuMI rG'GwC_Cy Cuts at: 2627 3100 2627 Size: 473 5552 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 6025 PsiI TTA'TAA Cuts at: 3096 3276 3595 3096 Size: 180 319 5526 Fragments arranged by size: 5526 319 180 PstI C_TGCA'G Cuts at: 830 2775 3174 3377 830 Size: 1945 399 203 3478 Fragments arranged by size: 3478 1945 399 203 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 6025 PvuII CAG'CTG Cuts at: 2214 2214 Size: 6025 SalI G'TCGA_C Cuts at: 1936 3367 1936 Size: 1431 4594 SbfI CC_TGCA'GG Cuts at: 3377 3377 Size: 6025 ScaI AGT'ACT Cuts at: 3294 4273 5985 3294 Size: 979 1712 3334 Fragments arranged by size: 3334 1712 979 SexAI A'CCwGG_T Cuts at: 2652 2652 Size: 6025 SfcI C'TryA_G Cuts at: 826 1045 2771 2983 3170 3373 4508 5189 5380 Size: 219 1726 212 187 203 1135 681 191 Cuts at: 5380 826 Size: 1471 Fragments arranged by size: 1726 1471 1135 681 219 212 203 191 187 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 6025 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 6025 SmaI CCC'GGG Cuts at: 1872 3352 1872 Size: 1480 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 4129 5030 5292 820 Size: 197 926 2186 901 262 1553 Fragments arranged by size: 2186 1553 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3816 493 Size: 3323 2702 SpeI A'CTAG_T Cuts at: 152 2057 152 Size: 1905 4120 SphI G_CATG'C Cuts at: 1132 3383 1132 Size: 2251 3774 SspI AAT'ATT Cuts at: 5 52 2026 3949 5 Size: 47 1974 1923 2081 Fragments arranged by size: 2081 1974 1923 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 6025 StyI C'CwwG_G Cuts at: 513 1065 2004 3464 513 Size: 552 939 1460 3074 Fragments arranged by size: 3074 1460 939 552 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 4052 4069 4222 4407 4852 325 Size: 1255 2472 17 153 185 445 1498 Fragments arranged by size: 2472 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 3203 3292 4271 Size: 274 80 33 51 1443 1226 89 979 Cuts at: 4271 5983 96 Size: 1712 138 Fragments arranged by size: 1712 1443 1226 979 274 138 89 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2056 2088 5985 6017 2056 Size: 32 3897 32 2064 Fragments arranged by size: 3897 2064 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 6025 XbaI T'CTAG_A Cuts at: 3361 3361 Size: 6025 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2752 2752 Size: 6025 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 6025 XmaI C'CCGG_G Cuts at: 1870 3350 1870 Size: 1480 4545 XmnI GAAnn'nnTTC Cuts at: 3129 4154 3129 Size: 1025 5000 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3833 276 Size: 53 83 186 936 2299 2468 Fragments arranged by size: 2468 2299 936 186 83 53 Enzymes that do cut: AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstXI BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PmeI PpiI PpuMI PshAI PsiI PstI PvuI PvuII SalI SbfI ScaI SexAI SfcI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AarI AfeI AloI ApaI AscI AvrII BaeI BbeI BbvCI BfrBI BplI Bpu10I BsiWI BsmBI BstZ17I Bsu36I DraIII EcoICRI EcoNI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PfoI PmlI PspOMI PspXI PsrI RsrII SacI SacII SanDI SapI SfiI SfoI SrfI SwaI