Result of FASTA (omim) for
pFN21AB8820
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448
Query: pF1KB8820, 384 aa
1>>>pF1KB8820 384 - 384 aa - 384 aa
Library: /omim/omim.rfq.tfa
60827320 residues in 85289 sequences
Statistics: Expectation_n fit: rho(ln(x))= 4.8824+/-0.000432; mu= 19.3441+/- 0.027
mean_var=90.6406+/-20.529, 0's: 0 Z-trim(110.5): 589 B-trim: 989 in 1/55
Lambda= 0.134714
statistics sampled from 18225 (18901) to 18225 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
ktup: 2, E-join: 1 (0.578), E-opt: 0.2 (0.222), width: 16
Scan time: 8.380
The best scores are: opt bits E(85289)
NP_001287 (OMIM: 602648) atypical chemokine recept ( 384) 2555 507.3 2.4e-143
XP_016861176 (OMIM: 604836) PREDICTED: C-C chemoki ( 360) 888 183.3 7.7e-46
NP_005499 (OMIM: 604836) C-C chemokine receptor ty ( 360) 888 183.3 7.7e-46
NP_001286 (OMIM: 601159) C-C chemokine receptor ty ( 355) 839 173.8 5.6e-43
NP_001116868 (OMIM: 601267) C-C chemokine receptor ( 360) 798 165.8 1.4e-40
XP_011532371 (OMIM: 601267) PREDICTED: C-C chemoki ( 360) 798 165.8 1.4e-40
NP_001158152 (OMIM: 601268) C-C chemokine receptor ( 373) 783 162.9 1.1e-39
NP_005192 (OMIM: 601834) C-C chemokine receptor ty ( 355) 782 162.7 1.2e-39
XP_006713023 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 782 162.7 1.2e-39
NP_001828 (OMIM: 601268) C-C chemokine receptor ty ( 355) 782 162.7 1.2e-39
NP_847899 (OMIM: 601268) C-C chemokine receptor ty ( 355) 782 162.7 1.2e-39
XP_011531637 (OMIM: 601268) PREDICTED: C-C chemoki ( 355) 782 162.7 1.2e-39
NP_001116513 (OMIM: 601267) C-C chemokine receptor ( 374) 782 162.7 1.3e-39
NP_847898 (OMIM: 601268) C-C chemokine receptor ty ( 376) 782 162.7 1.3e-39
XP_016861175 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 782 162.8 1.3e-39
XP_016861174 (OMIM: 601268) PREDICTED: C-C chemoki ( 410) 782 162.8 1.3e-39
NP_000570 (OMIM: 601373,609532,610379,612522) C-C ( 352) 766 159.6 1e-38
NP_001093638 (OMIM: 601373,609532,610379,612522) C ( 352) 766 159.6 1e-38
XP_016859481 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 734 153.4 7.9e-37
XP_005246587 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 734 153.4 7.9e-37
NP_001161770 (OMIM: 146928) C-X-C chemokine recept ( 360) 734 153.4 7.9e-37
XP_016859479 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 734 153.4 7.9e-37
NP_001548 (OMIM: 146928) C-X-C chemokine receptor ( 360) 734 153.4 7.9e-37
XP_016859480 (OMIM: 146928) PREDICTED: C-X-C chemo ( 360) 734 153.4 7.9e-37
NP_001328 (OMIM: 601470,607339,609423,613784) CX3C ( 355) 731 152.8 1.2e-36
NP_001164642 (OMIM: 601470,607339,609423,613784) C ( 355) 731 152.8 1.2e-36
NP_001164643 (OMIM: 601470,607339,609423,613784) C ( 355) 731 152.8 1.2e-36
NP_001495 (OMIM: 300574) C-X-C chemokine receptor ( 368) 731 152.8 1.2e-36
XP_005262313 (OMIM: 300574) PREDICTED: C-X-C chemo ( 378) 731 152.8 1.2e-36
NP_001164645 (OMIM: 601470,607339,609423,613784) C ( 387) 731 152.8 1.2e-36
XP_016884924 (OMIM: 300574) PREDICTED: C-X-C chemo ( 415) 731 152.9 1.3e-36
NP_001136269 (OMIM: 300574) C-X-C chemokine recept ( 415) 731 152.9 1.3e-36
NP_113597 (OMIM: 601835) C-C chemokine receptor ty ( 374) 726 151.9 2.4e-36
NP_004358 (OMIM: 601835) C-C chemokine receptor ty ( 374) 726 151.9 2.4e-36
NP_112477 (OMIM: 604738) C-C chemokine receptor ty ( 369) 722 151.1 4e-36
XP_011531614 (OMIM: 604738) PREDICTED: C-C chemoki ( 369) 722 151.1 4e-36
NP_001243298 (OMIM: 604738) C-C chemokine receptor ( 357) 705 147.8 3.9e-35
NP_006632 (OMIM: 604738) C-C chemokine receptor ty ( 357) 705 147.8 3.9e-35
NP_000625 (OMIM: 146929,609423) C-X-C chemokine re ( 350) 696 146.0 1.3e-34
NP_001008540 (OMIM: 162643,193670) C-X-C chemokine ( 356) 688 144.4 3.8e-34
NP_003458 (OMIM: 162643,193670) C-X-C chemokine re ( 352) 683 143.5 7.5e-34
NP_057641 (OMIM: 606065) atypical chemokine recept ( 350) 679 142.7 1.3e-33
NP_848540 (OMIM: 606065) atypical chemokine recept ( 350) 679 142.7 1.3e-33
NP_001288647 (OMIM: 600242) C-C chemokine receptor ( 372) 668 140.6 5.8e-33
NP_001288646 (OMIM: 600242) C-C chemokine receptor ( 372) 668 140.6 5.8e-33
NP_001288645 (OMIM: 600242) C-C chemokine receptor ( 372) 668 140.6 5.8e-33
NP_001829 (OMIM: 600242) C-C chemokine receptor ty ( 378) 668 140.6 5.9e-33
NP_116743 (OMIM: 601613) C-X-C chemokine receptor ( 327) 619 131.0 3.9e-30
NP_001707 (OMIM: 601613) C-X-C chemokine receptor ( 372) 619 131.1 4.3e-30
NP_001288643 (OMIM: 600242) C-C chemokine receptor ( 315) 612 129.6 9.9e-30
>>NP_001287 (OMIM: 602648) atypical chemokine receptor 2 (384 aa)
initn: 2555 init1: 2555 opt: 2555 Z-score: 2694.6 bits: 507.3 E(85289): 2.4e-143
Smith-Waterman score: 2555; 99.7% identity (99.7% similar) in 384 aa overlap (1-384:1-384)
10 20 30 40 50 60
pF1KB8 MAATASPQPLATEDADSENSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVLG
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 MAATASPQPLATEDADSENSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVLG
10 20 30 40 50 60
70 80 90 100 110 120
pF1KB8 LSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKMV
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKMV
70 80 90 100 110 120
130 140 150 160 170 180
pF1KB8 STLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPDM
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 STLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPDM
130 140 150 160 170 180
190 200 210 220 230 240
pF1KB8 VFVQTHENPKGVWNCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVRL
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 VFVQTHENPKGVWNCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVRL
190 200 210 220 230 240
250 260 270 280 290 300
pF1KB8 RPAGQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGNCEVSQHLDYALQVTESI
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 RPAGQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGNCEVSQHLDYALQVTESI
250 260 270 280 290 300
310 320 330 340 350 360
pF1KB8 AFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLAPGTAQASLSSCSESSILTAQEEMT
::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLAPGTAQASLSSCSESSILTAQEEMT
310 320 330 340 350 360
370 380
pF1KB8 GMNDLGERQSENSPNKEDVGNKSA
:::::::::::: :::::::::::
NP_001 GMNDLGERQSENYPNKEDVGNKSA
370 380
>>XP_016861176 (OMIM: 604836) PREDICTED: C-C chemokine r (360 aa)
initn: 821 init1: 468 opt: 888 Z-score: 944.0 bits: 183.3 E(85289): 7.7e-46
Smith-Waterman score: 888; 41.3% identity (73.6% similar) in 322 aa overlap (12-332:4-324)
10 20 30 40 50
pF1KB8 MAATASPQPLATEDADSE-NSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVL
:. ::. . :.: :: : : :... .::..::: .:::.::.
XP_016 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVF
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GLSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKM
:: :: ....::..: : :...::::::::.:::. .::::: .: .:::: ::::
XP_016 GLLGNSVVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VSTLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPD
.: .: ..:::::::. ::.:.:: :::: : :: . ... . .:.:.. .:.:
XP_016 ISWMYLVGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MVFVQTHENPKGVWNCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVR
..: . . . .. :.. .. ..: ::.. .. :.::...:: :.: :: : .: .
XP_016 FLFSTCYTERNHTY-CKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 LRPAGQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGNCEVSQHLDYALQVTES
. ...:.:. :.:: :. .: :::..:::.::..:.:. .: ..::::.:.::.
XP_016 CKNEKKNKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATET
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 IAFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLAPGTAQASLSSCSESSILTAQEEM
.::.:::..::.: : ...::.:. .. . :
XP_016 LAFVHCCLNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQST
300 310 320 330 340 350
360 370 380
pF1KB8 TGMNDLGERQSENSPNKEDVGNKSA
XP_016 MDHDLHDAL
360
>>NP_005499 (OMIM: 604836) C-C chemokine receptor type 4 (360 aa)
initn: 821 init1: 468 opt: 888 Z-score: 944.0 bits: 183.3 E(85289): 7.7e-46
Smith-Waterman score: 888; 41.3% identity (73.6% similar) in 322 aa overlap (12-332:4-324)
10 20 30 40 50
pF1KB8 MAATASPQPLATEDADSE-NSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVL
:. ::. . :.: :: : : :... .::..::: .:::.::.
NP_005 MNPTDIADTTLDESIYSNYYLYESIPKPCTKEGIKAFGELFLPPLYSLVFVF
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GLSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKM
:: :: ....::..: : :...::::::::.:::. .::::: .: .:::: ::::
NP_005 GLLGNSVVVLVLFKYKRLRSMTDVYLLNLAISDLLFVFSLPFWGYYAADQWVFGLGLCKM
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VSTLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPD
.: .: ..:::::::. ::.:.:: :::: : :: . ... . .:.:.. .:.:
NP_005 ISWMYLVGFYSGIFFVMLMSIDRYLAIVHAVFSLRARTLTYGVITSLATWSVAVFASLPG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MVFVQTHENPKGVWNCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVR
..: . . . .. :.. .. ..: ::.. .. :.::...:: :.: :: : .: .
NP_005 FLFSTCYTERNHTY-CKTKYSLNSTTWKVLSSLEINILGLVIPLGIMLFCYSMIIRTLQH
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 LRPAGQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGNCEVSQHLDYALQVTES
. ...:.:. :.:: :. .: :::..:::.::..:.:. .: ..::::.:.::.
NP_005 CKNEKKNKAVKMIFAVVVLFLGFWTPYNIVLFLETLVELEVLQDCTFERYLDYAIQATET
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 IAFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLAPGTAQASLSSCSESSILTAQEEM
.::.:::..::.: : ...::.:. .. . :
NP_005 LAFVHCCLNPIIYFFLGEKFRKYILQLFKTCRGLFVLCQYCGLLQIYSADTPSSSYTQST
300 310 320 330 340 350
360 370 380
pF1KB8 TGMNDLGERQSENSPNKEDVGNKSA
NP_005 MDHDLHDAL
360
>>NP_001286 (OMIM: 601159) C-C chemokine receptor type 1 (355 aa)
initn: 783 init1: 559 opt: 839 Z-score: 892.6 bits: 173.8 E(85289): 5.6e-43
Smith-Waterman score: 839; 39.6% identity (68.0% similar) in 359 aa overlap (9-360:4-352)
10 20 30 40 50 60
pF1KB8 MAATASPQPLATEDADSENSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVLG
: .::: :. . .:: : . :.: .:: .:: .:::.::.:
NP_001 METPNTTEDYDTTTE----FDYGDATP---CQKVNERAFGAQLLPPLYSLVFVIG
10 20 30 40
70 80 90 100 110
pF1KB8 LSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFW-GISVAWHWVFGSFLCKM
: ::.:...::..: . :. :::::::::.:::: ::::: .. ::::. .::.
NP_001 LVGNILVVLVLVQYKRLKNMTSIYLLNLAISDLLFLFTLPFWIDYKLKDDWVFGDAMCKI
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 VSTLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPD
.: .: ..:: :::: ...:.:: :::: : :: . ... . :.::... .:.:
NP_001 LSGFYYTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIIIWALAILASMPG
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 MVFVQTHENPKGVWNCHADFGGHGTI--WKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVL
. : .:. . .: : : .. :::: .. ::.:..::::.::. :. : .:
NP_001 LYFSKTQWEFTH-HTCSLHFP-HESLREWKLFQALKLNLFGLVLPLLVMIICYTGIIKIL
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 VRLRPA-GQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGNCEVSQHLDYALQV
.: :: ...:... .... ::..: :::::... .. :. .:: :.::: :.::
NP_001 LR-RPNEKKSKAVRLIFVIMIIFFLFWTPYNLTILISVFQDFLFTHECEQSRHLDLAVQV
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 TESIAFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLA---PGTAQASLSSCSESSIL
:: ::. ::: .:..::: ..:::.::. .. .. ::. : . : : .:
NP_001 TEVIAYTHCCVNPVIYAFVGERFRKYLRQLFHRRVAVHLVKWLPFLSVDRLERVSSTSPS
290 300 310 320 330 340
360 370 380
pF1KB8 TAQEEMTGMNDLGERQSENSPNKEDVGNKSA
:...:..
NP_001 TGEHELSAGF
350
>>NP_001116868 (OMIM: 601267) C-C chemokine receptor typ (360 aa)
initn: 682 init1: 378 opt: 798 Z-score: 849.4 bits: 165.8 E(85289): 1.4e-40
Smith-Waterman score: 798; 38.2% identity (74.4% similar) in 317 aa overlap (12-327:13-320)
10 20 30 40 50
pF1KB8 MAATASPQPLATEDADSENSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVL
:... : ..:. ::: :.: : ..: .:: .:::.:..
NP_001 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAP-----CHKFDVKQIGAQLLPPLYSLVFIF
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GLSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKM
:. ::.:....:. . ...:::::::::.::::.:::.:. :.: .::::. .::.
NP_001 GFVGNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VSTLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPD
. :: :....::::: ...:.:: :::: . :: . ... ..:.: :.. .:.:
NP_001 FTGLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MVFVQTHENPKGVWNCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVR
..:.. ... . :. : : .: :. : ...:.::..:::: :.. :: : .:.:
NP_001 IIFTKCQKEDS-VYVCGPYFP-RG--WNNFHTIMRNILGLVLPLLIMVICYSGILKTLLR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 LRPAGQ-GRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGNCEVSQHLDYALQVTE
: . ::... ......:..: :::....:.:. .. ..::: ...:: : ::::
NP_001 CRNEKKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 SIAFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLAPGTAQASLSSCSESSILTAQEE
.... :::..::.::: ...::.::..:.
NP_001 TLGMTHCCINPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTSTNTPST
300 310 320 330 340 350
>>XP_011532371 (OMIM: 601267) PREDICTED: C-C chemokine r (360 aa)
initn: 682 init1: 378 opt: 798 Z-score: 849.4 bits: 165.8 E(85289): 1.4e-40
Smith-Waterman score: 798; 38.2% identity (74.4% similar) in 317 aa overlap (12-327:13-320)
10 20 30 40 50
pF1KB8 MAATASPQPLATEDADSENSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVL
:... : ..:. ::: :.: : ..: .:: .:::.:..
XP_011 MLSTSRSRFIRNTNESGEEVTTFFDYDYGAP-----CHKFDVKQIGAQLLPPLYSLVFIF
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 GLSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKM
:. ::.:....:. . ...:::::::::.::::.:::.:. :.: .::::. .::.
XP_011 GFVGNMLVVLILINCKKLKCLTDIYLLNLAISDLLFLITLPLWAHSAANEWVFGNAMCKL
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 VSTLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPD
. :: :....::::: ...:.:: :::: . :: . ... ..:.: :.. .:.:
XP_011 FTGLYHIGYFGGIFFIILLTIDRYLAIVHAVFALKARTVTFGVVTSVITWLVAVFASVPG
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 MVFVQTHENPKGVWNCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVR
..:.. ... . :. : : .: :. : ...:.::..:::: :.. :: : .:.:
XP_011 IIFTKCQKEDS-VYVCGPYFP-RG--WNNFHTIMRNILGLVLPLLIMVICYSGILKTLLR
180 190 200 210 220 230
240 250 260 270 280 290
pF1KB8 LRPAGQ-GRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGNCEVSQHLDYALQVTE
: . ::... ......:..: :::....:.:. .. ..::: ...:: : ::::
XP_011 CRNEKKRHRAVRVIFTIMIVYFLFWTPYNIVILLNTFQEFFGLSNCESTSQLDQATQVTE
240 250 260 270 280 290
300 310 320 330 340 350
pF1KB8 SIAFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLAPGTAQASLSSCSESSILTAQEE
.... :::..::.::: ...::.::..:.
XP_011 TLGMTHCCINPIIYAFVGEKFRRYLSVFFRKHITKRFCKQCPVFYRETVDGVTSTNTPST
300 310 320 330 340 350
>>NP_001158152 (OMIM: 601268) C-C chemokine receptor typ (373 aa)
initn: 737 init1: 506 opt: 783 Z-score: 833.5 bits: 162.9 E(85289): 1.1e-39
Smith-Waterman score: 783; 37.0% identity (69.1% similar) in 362 aa overlap (8-360:13-370)
10 20 30 40 50
pF1KB8 MAATASPQPLATEDADSENS--SFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFY
.: .: . : .. .: .: :.:. .::.: . .. :.: .:
NP_001 MPFGIRMLLRAHKPGRSEMTTSLDTVETFGTTSYYDDVG-LLCEKADTRALMAQFVPPLY
10 20 30 40 50
60 70 80 90 100 110
pF1KB8 SLIFVLGLSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWH-WVF
::.:..:: ::....:.:..: : :..:::::::::.:::::::::: : : :::
NP_001 SLVFTVGLLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVF
60 70 80 90 100 110
120 130 140 150 160 170
pF1KB8 GSFLCKMVSTLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVS
: .::..: .: ..:: :::: ...:.:: :::: : :: . ... . ..:...
NP_001 GHGMCKLLSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLA
120 130 140 150 160 170
180 190 200 210 220 230
pF1KB8 LAVSIPDMVFVQTHENPKGVWNCHADFGGHGTI--WKLFLRFQQNLLGFLLPLLAMIFFY
. ...:...: .:.: . . : : . . :. :. : ...... ..::::.: . :
NP_001 VLAALPEFIFYETEELFEETL-CSALYP-EDTVYSWRHFHTLRMTIFCLVLPLLVMAICY
180 190 200 210 220 230
240 250 260 270 280
pF1KB8 SRIGCVLVRLRPAGQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGN-CEVSQH
. : .:.: . .:... .....::..: :::....: . .. .::: :: :.:
NP_001 TGIIKTLLRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSI-LFGNDCERSKH
240 250 260 270 280 290
290 300 310 320 330 340
pF1KB8 LDYALQVTESIAFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLA---PGTAQASLSS
:: .. ::: ::. :::..:..::: ..:::.::. :. : ::. : . .:
NP_001 LDLVMLVTEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLER
300 310 320 330 340 350
350 360 370 380
pF1KB8 CSESSILTAQEEMTGMNDLGERQSENSPNKEDVGNKSA
: : ::. :..
NP_001 TSSVSPSTAEPELSIVF
360 370
>>NP_005192 (OMIM: 601834) C-C chemokine receptor type 8 (355 aa)
initn: 768 init1: 406 opt: 782 Z-score: 832.7 bits: 162.7 E(85289): 1.2e-39
Smith-Waterman score: 782; 35.5% identity (68.1% similar) in 332 aa overlap (20-351:13-339)
10 20 30 40 50 60
pF1KB8 MAATASPQPLATEDADSENSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVLG
...:: : .. : . . . ::..: ::: :.::..
NP_005 MDYTLDLSVTTVTDYYYPDIFSSP----CDAELIQTNGKLLLAVFYCLLFVFS
10 20 30 40
70 80 90 100 110 120
pF1KB8 LSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWHWVFGSFLCKMV
: :: :...::. : ....::::::.:.:::. ..:: . .::::. .::.:
NP_005 LLGNSLVILVLVVCKKLRSITDVYLLNLALSDLLFVFSFPFQTYYLLDQWVFGTVMCKVV
50 60 70 80 90 100
130 140 150 160 170 180
pF1KB8 STLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPDM
: .: :.:::..:::. ::.:.:: .::: ..:: . : :: ... ..:: .
NP_005 SGFYYIGFYSSMFFITLMSVDRYLAVVHAVYALKVRTIRMGTTLCLAVWLTAIMATIPLL
110 120 130 140 150 160
190 200 210 220 230 240
pF1KB8 VFVQTHENPKGVWNCHADFGGHGTIWKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVLVRL
:: :. . :: .:.. .. . ::.: :..:.::.:.:. ..: : .: : :
NP_005 VFYQV-ASEDGVLQCYSFYNQQTLKWKIFTNFKMNILGLLIPFTIFMFCYIKILHQLKRC
170 180 190 200 210 220
250 260 270 280 290 300
pF1KB8 RPAGQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGNCEVSQHLDYALQVTESI
. .. .:.... .:.: ...: :.:..::: .: ..... .: .::.: :: .::: :
NP_005 QNHNKTKAIRLVLIVVIASLLFWVPFNVVLFLTSLHSMHILDGCSISQQLTYATHVTEII
230 240 250 260 270 280
310 320 330 340 350 360
pF1KB8 AFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLAPGTAQASLSSCSESSILTAQEEMT
.: ::: .:..::: ...:...:. .. . . : :: .::
NP_005 SFTHCCVNPVIYAFVGEKFKKHLSEIFQKSCSQIFNYLGRQMPRESCEKSSSCQQHSSRS
290 300 310 320 330 340
370 380
pF1KB8 GMNDLGERQSENSPNKEDVGNKSA
NP_005 SSVDYIL
350
>>XP_006713023 (OMIM: 601268) PREDICTED: C-C chemokine r (355 aa)
initn: 737 init1: 506 opt: 782 Z-score: 832.7 bits: 162.7 E(85289): 1.2e-39
Smith-Waterman score: 782; 37.8% identity (69.7% similar) in 347 aa overlap (21-360:10-352)
10 20 30 40 50 60
pF1KB8 MAATASPQPLATEDADSENSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVLG
.: .: :.:. .::.: . .. :.: .:::.:..:
XP_006 MTTSLDTVETFGTTSYYDDVG-LLCEKADTRALMAQFVPPLYSLVFTVG
10 20 30 40
70 80 90 100 110
pF1KB8 LSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWH-WVFGSFLCKM
: ::....:.:..: : :..:::::::::.:::::::::: : : :::: .::.
XP_006 LLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 VSTLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPD
.: .: ..:: :::: ...:.:: :::: : :: . ... . ..:.... ...:.
XP_006 LSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPE
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 MVFVQTHENPKGVWNCHADFGGHGTI--WKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVL
..: .:.: . . : : . . :. :. : ...... ..::::.: . :. : .:
XP_006 FIFYETEELFEETL-CSALYP-EDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTL
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 VRLRPAGQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGN-CEVSQHLDYALQV
.: . .:... .....::..: :::....: . .. .::: :: :.::: .. :
XP_006 LRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSI-LFGNDCERSKHLDLVMLV
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 TESIAFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLA---PGTAQASLSSCSESSIL
:: ::. :::..:..::: ..:::.::. :. : ::. : . .: : :
XP_006 TEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPS
290 300 310 320 330 340
360 370 380
pF1KB8 TAQEEMTGMNDLGERQSENSPNKEDVGNKSA
::. :..
XP_006 TAEPELSIVF
350
>>NP_001828 (OMIM: 601268) C-C chemokine receptor type 3 (355 aa)
initn: 737 init1: 506 opt: 782 Z-score: 832.7 bits: 162.7 E(85289): 1.2e-39
Smith-Waterman score: 782; 37.8% identity (69.7% similar) in 347 aa overlap (21-360:10-352)
10 20 30 40 50 60
pF1KB8 MAATASPQPLATEDADSENSSFYYYDYLDEVAFMLCRKDAVVSFGKVFLPVFYSLIFVLG
.: .: :.:. .::.: . .. :.: .:::.:..:
NP_001 MTTSLDTVETFGTTSYYDDVG-LLCEKADTRALMAQFVPPLYSLVFTVG
10 20 30 40
70 80 90 100 110
pF1KB8 LSGNLLLLMVLLRYVPRRRMVEIYLLNLAISNLLFLVTLPFWGISVAWH-WVFGSFLCKM
: ::....:.:..: : :..:::::::::.:::::::::: : : :::: .::.
NP_001 LLGNVVVVMILIKYRRLRIMTNIYLLNLAISDLLFLVTLPFWIHYVRGHNWVFGHGMCKL
50 60 70 80 90 100
120 130 140 150 160 170
pF1KB8 VSTLYTINFYSGIFFISCMSLDKYLEIVHAQPYHRLRTRAKSLLLATIVWAVSLAVSIPD
.: .: ..:: :::: ...:.:: :::: : :: . ... . ..:.... ...:.
NP_001 LSGFYHTGLYSEIFFIILLTIDRYLAIVHAVFALRARTVTFGVITSIVTWGLAVLAALPE
110 120 130 140 150 160
180 190 200 210 220 230
pF1KB8 MVFVQTHENPKGVWNCHADFGGHGTI--WKLFLRFQQNLLGFLLPLLAMIFFYSRIGCVL
..: .:.: . . : : . . :. :. : ...... ..::::.: . :. : .:
NP_001 FIFYETEELFEETL-CSALYP-EDTVYSWRHFHTLRMTIFCLVLPLLVMAICYTGIIKTL
170 180 190 200 210 220
240 250 260 270 280 290
pF1KB8 VRLRPAGQGRALKIAAALVVAFFVLWFPYNLTLFLHTLLDLQVFGN-CEVSQHLDYALQV
.: . .:... .....::..: :::....: . .. .::: :: :.::: .. :
NP_001 LRCPSKKKYKAIRLIFVIMAVFFIFWTPYNVAILLSSYQSI-LFGNDCERSKHLDLVMLV
230 240 250 260 270 280
300 310 320 330 340 350
pF1KB8 TESIAFLHCCFSPILYAFSSHRFRQYLKAFLAAVLGWHLA---PGTAQASLSSCSESSIL
:: ::. :::..:..::: ..:::.::. :. : ::. : . .: : :
NP_001 TEVIAYSHCCMNPVIYAFVGERFRKYLRHFFHRHLLMHLGRYIPFLPSEKLERTSSVSPS
290 300 310 320 330 340
360 370 380
pF1KB8 TAQEEMTGMNDLGERQSENSPNKEDVGNKSA
::. :..
NP_001 TAEPELSIVF
350
384 residues in 1 query sequences
60827320 residues in 85289 library sequences
Tcomplib [36.3.4 Apr, 2011] (8 proc)
start: Fri Nov 4 15:51:39 2016 done: Fri Nov 4 15:51:41 2016
Total Scan time: 8.380 Total Display time: 0.030
Function used was FASTA [36.3.4 Apr, 2011]