(Circular) (Six-base) MAPSORT of: pFN21AB8764.seq Check: 649 from: 1 to: 5359 pFN21AB8764 5359 bp With 182 enzymes: SgfI * February 27, 2009 14:43 .. AarI CACCTGCnnnn'nnnn_ Cuts at: 2243 2245 2428 2243 Size: 2 183 5174 Fragments arranged by size: 5174 183 2 AatII G_ACGT'C Cuts at: 278 331 414 600 1536 3169 278 Size: 53 83 186 936 1633 2468 Fragments arranged by size: 2468 1633 936 186 83 53 AccI GT'mk_AC Cuts at: 1937 2702 1937 Size: 765 4594 Acc65I G'GTAC_C Cuts at: 2680 2680 Size: 5359 AclI AA'CG_TT Cuts at: 1563 3486 3859 1563 Size: 1923 373 3063 Fragments arranged by size: 3063 1923 373 AcuI CTGAAGnnnnnnnnnnnnnn_nn' Cuts at: 1632 3422 4806 5074 1632 Size: 1790 1384 268 1917 Fragments arranged by size: 1917 1790 1384 268 AflII C'TTAA_G Cuts at: 820 1017 820 Size: 197 5162 AflIII A'CryG_T Cuts at: 1203 4258 5235 1203 Size: 3055 977 1327 Fragments arranged by size: 3055 1327 977 AgeI A'CCGG_T Cuts at: 4190 4190 Size: 5359 AhdI GACnn_n'nnGTC Cuts at: 4088 4088 Size: 5359 AleI CACnn'nnGTG Cuts at: 1166 1166 Size: 5359 AlfI GCAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1184 1184 Size: 5359 AlwNI CAG_nnn'CTG Cuts at: 3102 4674 3102 Size: 1572 3787 ApaI G_GGCC'C Cuts at: 2391 2391 Size: 5359 ApaLI G'TGCA_C Cuts at: 3416 4572 3416 Size: 1156 4203 ApoI r'AATT_y Cuts at: 1493 2668 2894 3046 5155 1493 Size: 1175 226 152 2109 1697 Fragments arranged by size: 2109 1697 1175 226 152 AseI AT'TA_AT Cuts at: 160 1032 3913 160 Size: 872 2881 1606 Fragments arranged by size: 2881 1606 872 AsiSI GCG_AT'CGC Cuts at: 2001 2001 Size: 5359 AvaI C'yCGr_G Cuts at: 1870 1943 2684 1870 Size: 73 741 4545 Fragments arranged by size: 4545 741 73 BamHI G'GATC_C Cuts at: 2371 2689 3056 2371 Size: 318 367 4674 Fragments arranged by size: 4674 367 318 BanI G'GyrC_C Cuts at: 618 943 1160 1787 2156 2211 2285 2444 2680 Size: 325 217 627 369 55 74 159 236 Cuts at: 2680 4135 618 Size: 1455 1842 Fragments arranged by size: 1842 1455 627 369 325 236 217 159 74 55 BanII G_rGCy'C Cuts at: 1391 2391 2545 2678 1391 Size: 1000 154 133 4072 Fragments arranged by size: 4072 1000 154 133 BbsI GAAGACnn'nnnn_ Cuts at: 928 1899 2025 928 Size: 971 126 4262 Fragments arranged by size: 4262 971 126 BcgI CGAnnnnnnTGCnnnnnnnnnn_nn' Cuts at: 1903 1937 3550 3584 1903 Size: 34 1613 34 3678 Fragments arranged by size: 3678 1613 34 34 BciVI GTATCCnnnnn_n' Cuts at: 3251 4461 3251 Size: 1210 4149 BclI T'GATC_A Cuts at: 1548 1548 Size: 5359 BglI GCCn_nnn'nGGC Cuts at: 136 243 365 436 1067 1672 2247 2386 3970 Size: 107 122 71 631 605 575 139 1584 Cuts at: 3970 136 Size: 1525 Fragments arranged by size: 1584 1525 631 605 575 139 122 107 71 BglII A'GATC_T Cuts at: 5354 5354 Size: 5359 BlpI GC'TnA_GC Cuts at: 2776 2776 Size: 5359 Bme1580I G_kGCm'C Cuts at: 1790 2159 2214 2288 2391 2447 3420 4576 1790 Size: 369 55 74 103 56 973 1156 2573 Fragments arranged by size: 2573 1156 973 369 103 74 56 55 BmgBI CAC'GTC Cuts at: 1318 1318 Size: 5359 BmrI ACTGGGnnnn_n' Cuts at: 442 858 911 994 1393 1417 2428 3090 4048 Size: 416 53 83 399 24 1011 662 958 Cuts at: 4048 442 Size: 1753 Fragments arranged by size: 1753 1011 958 662 416 399 83 53 24 BmtI G_CTAG'C Cuts at: 1056 1056 Size: 5359 BpmI CTGGAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 2354 2453 2567 2591 4019 1239 Size: 1115 99 114 24 1428 2579 Fragments arranged by size: 2579 1428 1115 114 99 24 Bpu10I CC'TnA_GC Cuts at: 2486 2486 Size: 5359 BpuEI CTTGAGnnnnnnnnnnnnnn_nn' Cuts at: 3484 4349 4647 3484 Size: 865 298 4196 Fragments arranged by size: 4196 865 298 BsaI GGTCTCn'nnnn_ Cuts at: 882 1499 4022 882 Size: 617 2523 2219 Fragments arranged by size: 2523 2219 617 BsaAI yAC'GTr Cuts at: 493 1204 3150 493 Size: 711 1946 2702 Fragments arranged by size: 2702 1946 711 BsaBI GATnn'nnATC Cuts at: 5353 5353 Size: 5359 BsaHI Gr'CG_yC Cuts at: 275 328 411 597 1533 3166 3548 4183 275 Size: 53 83 186 936 1633 382 635 1451 Fragments arranged by size: 1633 1451 936 635 382 186 83 53 BsaWI w'CCGG_w Cuts at: 3792 4190 4464 4611 5022 3792 Size: 398 274 147 411 4129 Fragments arranged by size: 4129 411 398 274 147 BsaXI ACnnnnnCTCCnnnnnnn_nnn' Cuts at: 1178 1208 1373 1403 2091 2121 2564 2594 1178 Size: 30 165 30 688 30 443 30 3943 Fragments arranged by size: 3943 688 443 165 30 30 30 30 BseRI GAGGAGnnnnnnnn_nn' Cuts at: 1186 2045 2090 2342 2564 1186 Size: 859 45 252 222 3981 Fragments arranged by size: 3981 859 252 222 45 BseYI C'CCAG_C Cuts at: 2207 2357 2391 4562 5058 2207 Size: 150 34 2171 496 2508 Fragments arranged by size: 2508 2171 496 150 34 BsgI GTGCAGnnnnnnnnnnnnnn_nn' Cuts at: 1163 1736 2277 1163 Size: 573 541 4245 Fragments arranged by size: 4245 573 541 BsiEI CG_ry'CG Cuts at: 1540 1815 2001 2809 3570 4598 1540 Size: 275 186 808 761 1028 2301 Fragments arranged by size: 2301 1028 808 761 275 186 BsiHKAI G_wGCw'C Cuts at: 3420 3505 4576 3420 Size: 85 1071 4203 Fragments arranged by size: 4203 1071 85 BsmI GAATG_Cn' Cuts at: 2870 2963 2870 Size: 93 5266 Bsp1286I G_dGCh'C Cuts at: 1391 1790 2159 2214 2288 2391 2447 2545 2678 Size: 399 369 55 74 103 56 98 133 Cuts at: 2678 3420 3505 4576 1391 Size: 742 85 1071 2174 Fragments arranged by size: 2174 1071 742 399 369 133 103 98 85 74 56 55 BspEI T'CCGG_A Cuts at: 5022 5022 Size: 5359 BspHI T'CATG_A Cuts at: 3248 4978 3248 Size: 1730 3629 BspMI ACCTGCnnnn'nnnn_ Cuts at: 844 2243 2245 2428 2714 844 Size: 1399 2 183 286 3489 Fragments arranged by size: 3489 1399 286 183 2 BsrBI CCG'CTC Cuts at: 1394 1823 3246 1394 Size: 429 1423 3507 Fragments arranged by size: 3507 1423 429 BsrDI GCAATG_nn' Cuts at: 65 1248 3854 4028 65 Size: 1183 2606 174 1396 Fragments arranged by size: 2606 1396 1183 174 BsrFI r'CCGG_y Cuts at: 1700 1810 4003 4190 1700 Size: 110 2193 187 2869 Fragments arranged by size: 2869 2193 187 110 BsrGI T'GTAC_A Cuts at: 96 96 Size: 5359 BssHII G'CGCG_C Cuts at: 1925 1925 Size: 5359 BssSI C'ACGA_G Cuts at: 2202 3419 4431 2202 Size: 1217 1012 3130 Fragments arranged by size: 3130 1217 1012 BstAPI GCAn_nnn'nTGC Cuts at: 794 794 Size: 5359 BstBI TT'CG_AA Cuts at: 4163 4163 Size: 5359 BstEII G'GTnAC_C Cuts at: 1184 1184 Size: 5359 BstYI r'GATC_y Cuts at: 1972 2371 2689 3056 3441 3458 4910 4996 5008 Size: 399 318 367 385 17 1452 86 12 Cuts at: 5008 5354 1972 Size: 346 1977 Fragments arranged by size: 1977 1452 399 385 367 346 318 86 17 12 BtgI C'CryG_G Cuts at: 513 1065 2263 2347 2383 2448 513 Size: 552 1198 84 36 65 3424 Fragments arranged by size: 3424 1198 552 84 65 36 BtgZI GCGATGnnnnnnnnnn'nnnn_ Cuts at: 487 1170 1226 487 Size: 683 56 4620 Fragments arranged by size: 4620 683 56 BtsI GCAGTG_nn' Cuts at: 2289 2508 2875 3669 3689 2289 Size: 219 367 794 20 3959 Fragments arranged by size: 3959 794 367 219 20 ClaI AT'CG_AT Cuts at: 1554 1554 Size: 5359 CspCI CAAnnnnnGTGGnnnnnnnnnn_nn' Cuts at: 529 564 2389 2424 529 Size: 35 1825 35 3464 Fragments arranged by size: 3464 1825 35 35 DraI TTT'AAA Cuts at: 2663 2663 Size: 5359 DrdI GACnn_nn'nnGTC Cuts at: 809 1316 4366 809 Size: 507 3050 1802 Fragments arranged by size: 3050 1802 507 EaeI y'GGCC_r Cuts at: 8 62 1487 1537 1812 1830 2344 2806 3695 Size: 54 1425 50 275 18 514 462 889 Cuts at: 3695 5324 8 Size: 1629 43 Fragments arranged by size: 1629 1425 889 514 462 275 54 50 43 18 EagI C'GGCC_G Cuts at: 1537 1812 2806 1537 Size: 275 994 4090 Fragments arranged by size: 4090 994 275 EarI CTCTTCn'nnn_ Cuts at: 1353 2022 2076 2333 3289 1353 Size: 669 54 257 956 3423 Fragments arranged by size: 3423 956 669 257 54 EciI GGCGGAnnnnnnnnn_nn' Cuts at: 387 1451 1589 3946 4320 4466 387 Size: 1064 138 2357 374 146 1280 Fragments arranged by size: 2357 1280 1064 374 146 138 Eco57MI CTGrAGnnnnnnnnnnnnnn_nn' Cuts at: 1239 1632 2354 2453 2567 2591 3422 4019 4806 Size: 393 722 99 114 24 831 597 787 Cuts at: 4806 5074 1239 Size: 268 1524 Fragments arranged by size: 1524 831 787 722 597 393 268 114 99 24 EcoNI CCTnn'n_nnAGG Cuts at: 2435 2549 2435 Size: 114 5245 EcoO109I rG'GnC_Cy Cuts at: 2379 2388 2379 Size: 9 5350 EcoRI G'AATT_C Cuts at: 2668 3046 2668 Size: 378 4981 FspI TGC'GCA Cuts at: 3865 3865 Size: 5359 HaeII r_GCGC'y Cuts at: 1678 2368 4506 1678 Size: 690 2138 2531 Fragments arranged by size: 2531 2138 690 Hin4I GAynnnnnvTCnnnnnnnn_nnnnn' Cuts at: 1373 1405 1540 1572 4000 4032 4074 4106 1373 Size: 32 135 32 2428 32 42 32 2626 Fragments arranged by size: 2626 2428 135 42 32 32 32 32 HincII GTy'rAC Cuts at: 669 1657 1938 2278 2703 2949 669 Size: 988 281 340 425 246 3079 Fragments arranged by size: 3079 988 425 340 281 246 HindIII A'AGCT_T Cuts at: 748 748 Size: 5359 HpaI GTT'AAC Cuts at: 2949 2949 Size: 5359 KpnI G_GTAC'C Cuts at: 2684 2684 Size: 5359 MfeI C'AATT_G Cuts at: 2958 2958 Size: 5359 MluI A'CGCG_T Cuts at: 5235 5235 Size: 5359 MmeI TCCrACnnnnnnnnnnnnnnnnnn_nn' Cuts at: 1305 4473 4657 1305 Size: 3168 184 2007 Fragments arranged by size: 3168 2007 184 MscI TGG'CCA Cuts at: 10 64 1489 1832 2346 10 Size: 54 1425 343 514 3023 Fragments arranged by size: 3023 1425 514 343 54 MslI CAynn'nnrTG Cuts at: 518 1166 2138 3317 3676 3835 518 Size: 648 972 1179 359 159 2042 Fragments arranged by size: 2042 1179 972 648 359 159 MspA1I CmG'CkG Cuts at: 1606 2614 2775 3452 4600 4845 1606 Size: 1008 161 677 1148 245 2120 Fragments arranged by size: 2120 1148 1008 677 245 161 NcoI C'CATG_G Cuts at: 513 1065 2347 2448 513 Size: 552 1282 101 3424 Fragments arranged by size: 3424 1282 552 101 NdeI CA'TA_TG Cuts at: 387 387 Size: 5359 NheI G'CTAG_C Cuts at: 1052 1052 Size: 5359 NotI GC'GGCC_GC Cuts at: 2806 2806 Size: 5359 NspI r_CATG'y Cuts at: 1132 1229 2320 2610 2717 4262 1132 Size: 97 1091 290 107 1545 2229 Fragments arranged by size: 2229 1545 1091 290 107 97 PasI CC'CwG_GG Cuts at: 1348 2270 1348 Size: 922 4437 PciI A'CATG_T Cuts at: 4258 4258 Size: 5359 PflMI CCAn_nnn'nTGG Cuts at: 1108 1108 Size: 5359 PfoI T'CCnGG_A Cuts at: 2430 2568 2430 Size: 138 5221 PmeI GTTT'AAAC Cuts at: 2663 2663 Size: 5359 PpiI GAACnnnnnCTCnnnnnnnn_nnnnn' Cuts at: 3428 3460 4941 4973 3428 Size: 32 1481 32 3814 Fragments arranged by size: 3814 1481 32 32 PshAI GACnn'nnGTC Cuts at: 1613 1613 Size: 5359 PsiI TTA'TAA Cuts at: 2929 2929 Size: 5359 PspOMI G'GGCC_C Cuts at: 2387 2387 Size: 5359 PstI C_TGCA'G Cuts at: 830 2635 2711 830 Size: 1805 76 3478 Fragments arranged by size: 3478 1805 76 PvuI CG_AT'CG Cuts at: 2001 2001 Size: 5359 SalI G'TCGA_C Cuts at: 1936 2701 1936 Size: 765 4594 SbfI CC_TGCA'GG Cuts at: 2711 2711 Size: 5359 ScaI AGT'ACT Cuts at: 3607 5319 3607 Size: 1712 3647 SfcI C'TryA_G Cuts at: 826 1045 2631 2707 3842 4523 4714 826 Size: 219 1586 76 1135 681 191 1471 Fragments arranged by size: 1586 1471 1135 681 219 191 76 SfiI GGCCn_nnn'nGGCC Cuts at: 2386 2386 Size: 5359 SgfI GCG_AT'CGC Cuts at: 2001 2001 Size: 5359 SgrAI Cr'CCGG_yG Cuts at: 1700 1700 Size: 5359 SmaI CCC'GGG Cuts at: 1872 2686 1872 Size: 814 4545 SmlI C'TyrA_G Cuts at: 820 1017 1943 3463 4364 4626 820 Size: 197 926 1520 901 262 1553 Fragments arranged by size: 1553 1520 926 901 262 197 SnaBI TAC'GTA Cuts at: 493 3150 493 Size: 2657 2702 SpeI A'CTAG_T Cuts at: 152 152 Size: 5359 SphI G_CATG'C Cuts at: 1132 2320 2610 2717 1132 Size: 1188 290 107 3774 Fragments arranged by size: 3774 1188 290 107 SspI AAT'ATT Cuts at: 5 52 2183 3283 5 Size: 47 2131 1100 2081 Fragments arranged by size: 2131 2081 1100 47 StuI AGG'CCT Cuts at: 1517 1517 Size: 5359 StyI C'CwwG_G Cuts at: 513 1065 2347 2375 2448 2798 513 Size: 552 1282 28 73 350 3074 Fragments arranged by size: 3074 1282 552 350 73 28 TaqII GACCGAnnnnnnnnn_nn' Cuts at: 325 1580 3386 3403 3556 3741 4186 325 Size: 1255 1806 17 153 185 445 1498 Fragments arranged by size: 1806 1498 1255 445 185 153 17 TatI w'GTAC_w Cuts at: 96 370 450 483 534 1977 2638 3605 5317 Size: 274 80 33 51 1443 661 967 1712 Cuts at: 5317 96 Size: 138 Fragments arranged by size: 1712 1443 967 661 274 138 80 51 33 TstI CACnnnnnnTCCnnnnnnn_nnnnn' Cuts at: 2564 2596 5319 5351 2564 Size: 32 2723 32 2572 Fragments arranged by size: 2723 2572 32 32 Tth111I GACn'n_nGTC Cuts at: 1316 1316 Size: 5359 XbaI T'CTAG_A Cuts at: 2695 2695 Size: 5359 XcmI CCAnnnn_n'nnnnTGG Cuts at: 2354 2354 Size: 5359 XhoI C'TCGA_G Cuts at: 1943 1943 Size: 5359 XmaI C'CCGG_G Cuts at: 1870 2684 1870 Size: 814 4545 XmnI GAAnn'nnTTC Cuts at: 3488 3488 Size: 5359 ZraI GAC'GTC Cuts at: 276 329 412 598 1534 3167 276 Size: 53 83 186 936 1633 2468 Fragments arranged by size: 2468 1633 936 186 83 53 Enzymes that do cut: AarI AatII AccI Acc65I AclI AcuI AflII AflIII AgeI AhdI AleI AlfI AlwNI ApaI ApaLI ApoI AseI AsiSI AvaI BamHI BanI BanII BbsI BcgI BciVI BclI BglI BglII BlpI Bme1580I BmgBI BmrI BmtI BpmI Bpu10I BpuEI BsaI BsaAI BsaBI BsaHI BsaWI BsaXI BseRI BseYI BsgI BsiEI BsiHKAI BsmI Bsp1286I BspEI BspHI BspMI BsrBI BsrDI BsrFI BsrGI BssHII BssSI BstAPI BstBI BstEII BstYI BtgI BtgZI BtsI ClaI CspCI DraI DrdI EaeI EagI EarI EciI Eco57MI EcoNI EcoO109I EcoRI FspI HaeII Hin4I HincII HindIII HpaI KpnI MfeI MluI MmeI MscI MslI MspA1I NcoI NdeI NheI NotI NspI PasI PciI PflMI PfoI PmeI PpiI PshAI PsiI PspOMI PstI PvuI SalI SbfI ScaI SfcI SfiI SgfI SgrAI SmaI SmlI SnaBI SpeI SphI SspI StuI StyI TaqII TatI TstI Tth111I XbaI XcmI XhoI XmaI XmnI ZraI Enzymes that do not cut: AfeI AloI AscI AvrII BaeI BbeI BbvCI BfrBI BplI BsiWI BsmBI BstXI BstZ17I Bsu36I DraIII EcoICRI EcoRV FalI FseI FspAI KasI NaeI NarI NgoMIV NruI NsiI PacI PmlI PpuMI PspXI PsrI PvuII RsrII SacI SacII SanDI SapI SexAI SfoI SrfI SwaI